You are here

Home

KJC3_001780-T1, KJC3_001780-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001780-T1
Unique NameKJC3_001780-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:665226..666819+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001780-T1 ID=KJC3_001780-T1|Name=KJC3_001780-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1594bp|location=Sequence derived from alignment at ch2:665226..666819+ (Aspergillus niger KJC3)
CCTATATATACTATTGTCGTTTTCCACCTAGAGCACTTCCCATTACCATC
ATCAGTTTGCCATTATCCTTCAGAAGTGGTATAATTACTTGAGTATCAAA
TTCTGCAGCTTGTCTCTTACCATTATGTCTTCATACTCCTTTCAGACTTC
AGCAGAACAGGTGGCACAGGATTGCCAGGATGCAATTGCCAACAAGACCA
TTCTCGTGACTGGCGTTAGTCCAGGTGGTCTTGGTGCCGAGTTCGCAAAA
GTCATTGCCATCCACAGCCCTTCGCTCATCATCCTTGCTAGCCGTGATAT
TCTCAAAGCTCAACAGACGGCCCAGGAGATTGCGAACATTGCTCCAGGAG
TAGCCACCCGTCTCCTAGAACTAGATCTGCGCTCTCAGGCCCAAGTCCGA
AACGCTGCCAAGGAAGTCCTGACATACAAGGAGGATATCGATGTCTTGGT
CAACAATGCTGGTGTCATGGCATCACCATTCTCGTTGACAGAAGATGGAA
TCGAGAGCCAATTTGCCACCAACCACGTTGGACATTTCCTCTTCACCAAT
TTGATTATAAAAAAGCTAGTGCATCCTGGAACCCCTTGTCGGGTTGTGAA
TGTGTCGAGTAATGGCCACCAGTTGAGTTCAATCAGATTCCATGACTGGA
ATTTTGACGTGAGTAATTATGCGTGGTATCCCAATGTCGAGACAATGAGC
TGAAGGCTAGTATTAGGAAGGCAAAAACTATGACCCTTGGTTGGCCTACG
GCCAAAGCAAATCCGCCAACATGCTCTTCTCTGTGTCTCTTGCGCAAAAG
CTTGGGAGCAAAGGTCTCATCTCGGTCAGCCTACATCCTGGAACAATCAA
CACGAATCTTGCCAGAGGAGACTGGTCCGAGATGTACGAATCTCTCGGTA
TGGGCCACATCTGTATCCTTTGCACGAGGTACGCTAGCTGACATTACCGA
AGTGAAATGGTTCACAGTACTCGGGTACTTCCGGAGTGGGCAGAGAGAGA
TAACCTGGAAGACTATGTCGCAAGGGGTGGCGACGCATGTATTCGCCGCA
TTTCATCCATCCATCACCACACATCGTAAGTTGATTCTGTGGGTGGCTCA
TCGTTCTAAGCTAACCAAGTCTGGCAGAGAACAATGGAAGCTTTGTCCAG
GACTGTACAGTACTGAAGCCGGAGGAGGTCCGCAGCTGGGCGCGGGATCC
GATCGAAGCAGAACAACTGTGGAAGTTGACTGAGGATATAGTTGGTGAAA
CTTTCGAGTATTGAAAACCATCACTGTGATGAATGGTGAGGTAGTGGAAA
CAGACATTTAGTTGGAGATGTGCTCTGTGTGAGATTGATTCGTTGTTTTT
GACTTTGTCTTGTCTTTACTCAATAATTTCATCTTGCGTTCAATGCTTGA
GAACTCCTGGGCTTGTAGATGCTTCGTGACGTGCAATCCGTGTTGTTAGC
ATAGCATTCACCGCCAGCTTATGTCCGCCTTGGCCTGAGCAGGAACGGAA
ATGTAAGAGTACCGGGCGGATTCGGTGCTGAAGGACACAAGTGCAACTAG
GACTGACTTGTCACATTCTAGGGCATTCCCAACTCATAACCCAC
back to top

Coding sequence (CDS) from alignment at ch2:665226..666819+

>KJC3_001780-T1 ID=KJC3_001780-T1|Name=KJC3_001780-T1|organism=Aspergillus niger KJC3|type=CDS|length=3900bp|location=Sequence derived from alignment at ch2:665226..666819+ (Aspergillus niger KJC3)
ATGTCTTCATACTCCTTTCAGACTTCAGCAGAACAGGTGGCACAGGATTG
CCAGGATGCAATTGCCAACAAGACCATTCTCGTGACTGGCGTTAGTCCAG
GTGGTCTTGGTGCCGAGTTCGCAAAAGTCATTGCCATCCACAGCCCTTCG
CTCATCATCCTTGCTAGCCGTGATATTCTCAAAGCTCAACAGACGGCCCA
GGAGATTGCGAACATTGCTCCAGGAGTAGCCACCCGTCTCCTAGAACTAG
ATCTGCGCTCTCAGGCCCAAGTCCGAAACGCTGCCAAGGAAGTCCTGACA
TACAAGGAGGATATCGATGTCTTGGTCAACAATGCTGGTGTCATGGCATC
ACCATTCTCGTTGACAGAAGATGGAATCGAGAGCCAATTTGCCACCAACC
ACGTTGGACATTTCCTCTTCACCAATTTGATTATAAAAAAGCTAGTGCAT
CCTGGAACCCCTTGTCGGGTTGTGAATGTGTCGAGTAATGGCCACCAGTT
GAGTTCAATCAGATTCCATGACTGGAATTTTGACGAAGGCAAAAACTATG
ACCCTTGGTTGGCCTACGGCCAAAGCAAATCCGCCAACATGCTCTTCTCT
GTGTCTCTTGCGCAAAAGCTTGGGAGCAAAGGTCTCATCTCGGTCAGCCT
ACATCCTGGAACAATCAACACGAATCTTGCCAGAGGAGACTGGTCCGAGA
TGTACGAATCTCTCGTGAAATGGTTCACAGTACTCGGGTACTTCCGGAGT
GGGCAGAGAGAGATAACCTGGAAGACTATGTCGCAAGGGGTGGCGACGCA
TGTATTCGCCGCATTTCATCCATCCATCACCACACATCAGAACAATGGAA
GCTTTGTCCAGGACTGTACAGTACTGAAGCCGGAGGAGGTCCGCAGCTGG
GCGCGGGATCCGATCGAAGCAGAACAACTGTGGAAGTTGACTGAGGATAT
AGTTGGTGAAACTTTCGAGTATTGAATGTCTTCATACTCCTTTCAGACTT
CAGCAGAACAGGTGGCACAGGATTGCCAGGATGCAATTGCCAACAAGACC
ATTCTCGTGACTGGCGTTAGTCCAGGTGGTCTTGGTGCCGAGTTCGCAAA
AGTCATTGCCATCCACAGCCCTTCGCTCATCATCCTTGCTAGCCGTGATA
TTCTCAAAGCTCAACAGACGGCCCAGGAGATTGCGAACATTGCTCCAGGA
GTAGCCACCCGTCTCCTAGAACTAGATCTGCGCTCTCAGGCCCAAGTCCG
AAACGCTGCCAAGGAAGTCCTGACATACAAGGAGGATATCGATGTCTTGG
TCAACAATGCTGGTGTCATGGCATCACCATTCTCGTTGACAGAAGATGGA
ATCGAGAGCCAATTTGCCACCAACCACGTTGGACATTTCCTCTTCACCAA
TTTGATTATAAAAAAGCTAGTGCATCCTGGAACCCCTTGTCGGGTTGTGA
ATGTGTCGAGTAATGGCCACCAGTTGAGTTCAATCAGATTCCATGACTGG
AATTTTGACGAAGGCAAAAACTATGACCCTTGGTTGGCCTACGGCCAAAG
CAAATCCGCCAACATGCTCTTCTCTGTGTCTCTTGCGCAAAAGCTTGGGA
GCAAAGGTCTCATCTCGGTCAGCCTACATCCTGGAACAATCAACACGAAT
CTTGCCAGAGGAGACTGGTCCGAGATGTACGAATCTCTCGTGAAATGGTT
CACAGTACTCGGGTACTTCCGGAGTGGGCAGAGAGAGATAACCTGGAAGA
CTATGTCGCAAGGGGTGGCGACGCATGTATTCGCCGCATTTCATCCATCC
ATCACCACACATCAGAACAATGGAAGCTTTGTCCAGGACTGTACAGTACT
GAAGCCGGAGGAGGTCCGCAGCTGGGCGCGGGATCCGATCGAAGCAGAAC
AACTGTGGAAGTTGACTGAGGATATAGTTGGTGAAACTTTCGAGTATTGA
ATGTCTTCATACTCCTTTCAGACTTCAGCAGAACAGGTGGCACAGGATTG
CCAGGATGCAATTGCCAACAAGACCATTCTCGTGACTGGCGTTAGTCCAG
GTGGTCTTGGTGCCGAGTTCGCAAAAGTCATTGCCATCCACAGCCCTTCG
CTCATCATCCTTGCTAGCCGTGATATTCTCAAAGCTCAACAGACGGCCCA
GGAGATTGCGAACATTGCTCCAGGAGTAGCCACCCGTCTCCTAGAACTAG
ATCTGCGCTCTCAGGCCCAAGTCCGAAACGCTGCCAAGGAAGTCCTGACA
TACAAGGAGGATATCGATGTCTTGGTCAACAATGCTGGTGTCATGGCATC
ACCATTCTCGTTGACAGAAGATGGAATCGAGAGCCAATTTGCCACCAACC
ACGTTGGACATTTCCTCTTCACCAATTTGATTATAAAAAAGCTAGTGCAT
CCTGGAACCCCTTGTCGGGTTGTGAATGTGTCGAGTAATGGCCACCAGTT
GAGTTCAATCAGATTCCATGACTGGAATTTTGACGAAGGCAAAAACTATG
ACCCTTGGTTGGCCTACGGCCAAAGCAAATCCGCCAACATGCTCTTCTCT
GTGTCTCTTGCGCAAAAGCTTGGGAGCAAAGGTCTCATCTCGGTCAGCCT
ACATCCTGGAACAATCAACACGAATCTTGCCAGAGGAGACTGGTCCGAGA
TGTACGAATCTCTCGTGAAATGGTTCACAGTACTCGGGTACTTCCGGAGT
GGGCAGAGAGAGATAACCTGGAAGACTATGTCGCAAGGGGTGGCGACGCA
TGTATTCGCCGCATTTCATCCATCCATCACCACACATCAGAACAATGGAA
GCTTTGTCCAGGACTGTACAGTACTGAAGCCGGAGGAGGTCCGCAGCTGG
GCGCGGGATCCGATCGAAGCAGAACAACTGTGGAAGTTGACTGAGGATAT
AGTTGGTGAAACTTTCGAGTATTGAATGTCTTCATACTCCTTTCAGACTT
CAGCAGAACAGGTGGCACAGGATTGCCAGGATGCAATTGCCAACAAGACC
ATTCTCGTGACTGGCGTTAGTCCAGGTGGTCTTGGTGCCGAGTTCGCAAA
AGTCATTGCCATCCACAGCCCTTCGCTCATCATCCTTGCTAGCCGTGATA
TTCTCAAAGCTCAACAGACGGCCCAGGAGATTGCGAACATTGCTCCAGGA
GTAGCCACCCGTCTCCTAGAACTAGATCTGCGCTCTCAGGCCCAAGTCCG
AAACGCTGCCAAGGAAGTCCTGACATACAAGGAGGATATCGATGTCTTGG
TCAACAATGCTGGTGTCATGGCATCACCATTCTCGTTGACAGAAGATGGA
ATCGAGAGCCAATTTGCCACCAACCACGTTGGACATTTCCTCTTCACCAA
TTTGATTATAAAAAAGCTAGTGCATCCTGGAACCCCTTGTCGGGTTGTGA
ATGTGTCGAGTAATGGCCACCAGTTGAGTTCAATCAGATTCCATGACTGG
AATTTTGACGAAGGCAAAAACTATGACCCTTGGTTGGCCTACGGCCAAAG
CAAATCCGCCAACATGCTCTTCTCTGTGTCTCTTGCGCAAAAGCTTGGGA
GCAAAGGTCTCATCTCGGTCAGCCTACATCCTGGAACAATCAACACGAAT
CTTGCCAGAGGAGACTGGTCCGAGATGTACGAATCTCTCGTGAAATGGTT
CACAGTACTCGGGTACTTCCGGAGTGGGCAGAGAGAGATAACCTGGAAGA
CTATGTCGCAAGGGGTGGCGACGCATGTATTCGCCGCATTTCATCCATCC
ATCACCACACATCAGAACAATGGAAGCTTTGTCCAGGACTGTACAGTACT
GAAGCCGGAGGAGGTCCGCAGCTGGGCGCGGGATCCGATCGAAGCAGAAC
AACTGTGGAAGTTGACTGAGGATATAGTTGGTGAAACTTTCGAGTATTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001780KJC3_001780Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001780-T1KJC3_001780-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001780-T1.utr5p1KJC3_001780-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001780-T1.exon1KJC3_001780-T1.exon1Aspergillus niger KJC3exon
KJC3_001780-T1.exon2KJC3_001780-T1.exon2Aspergillus niger KJC3exon
KJC3_001780-T1.exon3KJC3_001780-T1.exon3Aspergillus niger KJC3exon
KJC3_001780-T1.exon4KJC3_001780-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001780-T1.cdsKJC3_001780-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001780-T1.utr3p1KJC3_001780-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR002347
DBxrefPFAM:PF08659
DBxrefPFAM:PF13561
DBxrefPFAM:PF00106
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:665226..666819 +
Powered by Drupal