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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:761288..762717- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001813-T1 ID=KJC3_001813-T1|Name=KJC3_001813-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1430bp|location=Sequence derived from alignment at ch2:761288..762717- (Aspergillus niger KJC3)
ATGCCCTCCCGCCGCAGTCATACCAAGTCCCGGAAGGGTTGTCTCCAATG
TAAGAAACGGCATGTGAAGGTCTGACTTCCTTTATTTTCTCCCGGTTGTC
TTCTTTCAATCTGGTTCGCTACCTTTTCCCACTCTCCGGGATCGGTGGTC
CCTATGCCGTCGCAGTCGTCGGTATAAATACATTATACATGCTGTTTTCC
TCCAGCAGTATCATGCATGTTATCGGTTTCATGCTGACCCACGGAGTAGT
GCGACGAAGAGACACCACGATGTGGCTTGTGCAAGAAAAGAAGACTTGAT
TGCACATACCCTCCGTCAAGTGAAGCGGATAGCCAGCATGCATCCACACC
CCAAGATATGCCTGATGTGTTTCCTGGTCCCGAAGGAGAACCGCAATCGG
ATAGGATGCTTGAGATGAAACTCTTCCACCACTATCTAACAGAGACATAC
ATCACACTCTGTCAAGGGCGTCTAGATGCTCACCACTTTCAAGTGGTTGT
CCCACGGATCGCGGTCTCCCATGCCTTCTTGCTGGACAGTCTACTAGCAA
TGTCTGCTCTTCATCTAGCGTACCTGAACACTCATGATAACCGTCCATGG
CTCGAGATTGCCCTTAAATACCAGAACAGAGCCTGTTCAGCATTCACCCG
TGTACTCGCGGAAATGACACCCGAGAACTGCGCACCAGCATTCCTGTGCT
CCATCTTCATTATGCTCTGCGCAACGGCCTACCCGTGTGTCACCCAGGAT
AAGCATACATTCGAGCCTTTGTCCCATGTCTTGGAGATCCGGCAGCTCAT
AGCGGGATGTGCATTTCTTTTTGAACAGCTTAGCGGCATGGAATATCGGG
GTGACCTCCAAGGGTGGCTGAAGTACAAGGATGACGAGATCGATCAAGAT
GGGAATCCCTACCAGTACTTGCTTTGCCTCTTTCTTTCCATGACAGTAGA
GTGCTAATGTCTCTCTAGCGTACAGGAATCCCAGATCAAACTACGCAGGT
ATGTTATCTCAAAACCTCGCGAGAACTCGGCCAACGGATGCTAACATTCA
CAAGTGCCATTATAGAGTCTTTGCAGCGGGTGCAAGACAAATTTACCAGC
CTTGGTGGGCCGAATCAGACAACGTACCAAAACACGTGGGATATTCTTCA
TGAAGCCATCAAACGATGGCCATTCGGCGGCCCAAACGGTGGCATTATTG
CGTGGCCCATAAACATCAGCGAAGACTACATTGCTCTGCTAAAAAGTGGA
GACTGGGTGGGCCGGGTGCTATTTCTACACTACGGGGTCGGATTGCACCT
TCTCTCCGACAAGTGGTTTGTCCGAGACTGGGGCCGACGTCTTATTGAAA
CAGTCCTGCAATCGCAGGAAGATATACCCCCAATTTGGACCGAAACCATC
ACCTGGACAAAGGAGGCCGTGGAGCTTTAA back to topCoding sequence (CDS) from alignment at ch2:761288..762717- >KJC3_001813-T1 ID=KJC3_001813-T1|Name=KJC3_001813-T1|organism=Aspergillus niger KJC3|type=CDS|length=4560bp|location=Sequence derived from alignment at ch2:761288..762717- (Aspergillus niger KJC3)
TGCCATTATAGAGTCTTTGCAGCGGGTGCAAGACAAATTTACCAGCCTTG
GTGGGCCGAATCAGACAACGTACCAAAACACGTGGGATATTCTTCATGAA
GCCATCAAACGATGGCCATTCGGCGGCCCAAACGGTGGCATTATTGCGTG
GCCCATAAACATCAGCGAAGACTACATTGCTCTGCTAAAAAGTGGAGACT
GGGTGGGCCGGGTGCTATTTCTACACTACGGGGTCGGATTGCACCTTCTC
TCCGACAAGTGGTTTGTCCGAGACTGGGGCCGACGTCTTATTGAAACAGT
CCTGCAATCGCAGGAAGATATACCCCCAATTTGGACCGAAACCATCACCT
GGACAAAGGAGGCCGTGGAGCTTTAACGTACAGGAATCCCAGATCAAACT
ACGCAGTGCGACGAAGAGACACCACGATGTGGCTTGTGCAAGAAAAGAAG
ACTTGATTGCACATACCCTCCGTCAAGTGAAGCGGATAGCCAGCATGCAT
CCACACCCCAAGATATGCCTGATGTGTTTCCTGGTCCCGAAGGAGAACCG
CAATCGGATAGGATGCTTGAGATGAAACTCTTCCACCACTATCTAACAGA
GACATACATCACACTCTGTCAAGGGCGTCTAGATGCTCACCACTTTCAAG
TGGTTGTCCCACGGATCGCGGTCTCCCATGCCTTCTTGCTGGACAGTCTA
CTAGCAATGTCTGCTCTTCATCTAGCGTACCTGAACACTCATGATAACCG
TCCATGGCTCGAGATTGCCCTTAAATACCAGAACAGAGCCTGTTCAGCAT
TCACCCGTGTACTCGCGGAAATGACACCCGAGAACTGCGCACCAGCATTC
CTGTGCTCCATCTTCATTATGCTCTGCGCAACGGCCTACCCGTGTGTCAC
CCAGGATAAGCATACATTCGAGCCTTTGTCCCATGTCTTGGAGATCCGGC
AGCTCATAGCGGGATGTGCATTTCTTTTTGAACAGCTTAGCGGCATGGAA
TATCGGGGTGACCTCCAAGGGTGGCTGAAGTACAAGGATGACGAGATCGA
TCAAGATGGGAATCCCTACCAATGCCCTCCCGCCGCAGTCATACCAAGTC
CCGGAAGGGTTGTCTCCAATGTAAGAAACGGCATGTGAAGTGCCATTATA
GAGTCTTTGCAGCGGGTGCAAGACAAATTTACCAGCCTTGGTGGGCCGAA
TCAGACAACGTACCAAAACACGTGGGATATTCTTCATGAAGCCATCAAAC
GATGGCCATTCGGCGGCCCAAACGGTGGCATTATTGCGTGGCCCATAAAC
ATCAGCGAAGACTACATTGCTCTGCTAAAAAGTGGAGACTGGGTGGGCCG
GGTGCTATTTCTACACTACGGGGTCGGATTGCACCTTCTCTCCGACAAGT
GGTTTGTCCGAGACTGGGGCCGACGTCTTATTGAAACAGTCCTGCAATCG
CAGGAAGATATACCCCCAATTTGGACCGAAACCATCACCTGGACAAAGGA
GGCCGTGGAGCTTTAACGTACAGGAATCCCAGATCAAACTACGCAGTGCG
ACGAAGAGACACCACGATGTGGCTTGTGCAAGAAAAGAAGACTTGATTGC
ACATACCCTCCGTCAAGTGAAGCGGATAGCCAGCATGCATCCACACCCCA
AGATATGCCTGATGTGTTTCCTGGTCCCGAAGGAGAACCGCAATCGGATA
GGATGCTTGAGATGAAACTCTTCCACCACTATCTAACAGAGACATACATC
ACACTCTGTCAAGGGCGTCTAGATGCTCACCACTTTCAAGTGGTTGTCCC
ACGGATCGCGGTCTCCCATGCCTTCTTGCTGGACAGTCTACTAGCAATGT
CTGCTCTTCATCTAGCGTACCTGAACACTCATGATAACCGTCCATGGCTC
GAGATTGCCCTTAAATACCAGAACAGAGCCTGTTCAGCATTCACCCGTGT
ACTCGCGGAAATGACACCCGAGAACTGCGCACCAGCATTCCTGTGCTCCA
TCTTCATTATGCTCTGCGCAACGGCCTACCCGTGTGTCACCCAGGATAAG
CATACATTCGAGCCTTTGTCCCATGTCTTGGAGATCCGGCAGCTCATAGC
GGGATGTGCATTTCTTTTTGAACAGCTTAGCGGCATGGAATATCGGGGTG
ACCTCCAAGGGTGGCTGAAGTACAAGGATGACGAGATCGATCAAGATGGG
AATCCCTACCAATGCCCTCCCGCCGCAGTCATACCAAGTCCCGGAAGGGT
TGTCTCCAATGTAAGAAACGGCATGTGAAGTGCCATTATAGAGTCTTTGC
AGCGGGTGCAAGACAAATTTACCAGCCTTGGTGGGCCGAATCAGACAACG
TACCAAAACACGTGGGATATTCTTCATGAAGCCATCAAACGATGGCCATT
CGGCGGCCCAAACGGTGGCATTATTGCGTGGCCCATAAACATCAGCGAAG
ACTACATTGCTCTGCTAAAAAGTGGAGACTGGGTGGGCCGGGTGCTATTT
CTACACTACGGGGTCGGATTGCACCTTCTCTCCGACAAGTGGTTTGTCCG
AGACTGGGGCCGACGTCTTATTGAAACAGTCCTGCAATCGCAGGAAGATA
TACCCCCAATTTGGACCGAAACCATCACCTGGACAAAGGAGGCCGTGGAG
CTTTAACGTACAGGAATCCCAGATCAAACTACGCAGTGCGACGAAGAGAC
ACCACGATGTGGCTTGTGCAAGAAAAGAAGACTTGATTGCACATACCCTC
CGTCAAGTGAAGCGGATAGCCAGCATGCATCCACACCCCAAGATATGCCT
GATGTGTTTCCTGGTCCCGAAGGAGAACCGCAATCGGATAGGATGCTTGA
GATGAAACTCTTCCACCACTATCTAACAGAGACATACATCACACTCTGTC
AAGGGCGTCTAGATGCTCACCACTTTCAAGTGGTTGTCCCACGGATCGCG
GTCTCCCATGCCTTCTTGCTGGACAGTCTACTAGCAATGTCTGCTCTTCA
TCTAGCGTACCTGAACACTCATGATAACCGTCCATGGCTCGAGATTGCCC
TTAAATACCAGAACAGAGCCTGTTCAGCATTCACCCGTGTACTCGCGGAA
ATGACACCCGAGAACTGCGCACCAGCATTCCTGTGCTCCATCTTCATTAT
GCTCTGCGCAACGGCCTACCCGTGTGTCACCCAGGATAAGCATACATTCG
AGCCTTTGTCCCATGTCTTGGAGATCCGGCAGCTCATAGCGGGATGTGCA
TTTCTTTTTGAACAGCTTAGCGGCATGGAATATCGGGGTGACCTCCAAGG
GTGGCTGAAGTACAAGGATGACGAGATCGATCAAGATGGGAATCCCTACC
AATGCCCTCCCGCCGCAGTCATACCAAGTCCCGGAAGGGTTGTCTCCAAT
GTAAGAAACGGCATGTGAAGTGCCATTATAGAGTCTTTGCAGCGGGTGCA
AGACAAATTTACCAGCCTTGGTGGGCCGAATCAGACAACGTACCAAAACA
CGTGGGATATTCTTCATGAAGCCATCAAACGATGGCCATTCGGCGGCCCA
AACGGTGGCATTATTGCGTGGCCCATAAACATCAGCGAAGACTACATTGC
TCTGCTAAAAAGTGGAGACTGGGTGGGCCGGGTGCTATTTCTACACTACG
GGGTCGGATTGCACCTTCTCTCCGACAAGTGGTTTGTCCGAGACTGGGGC
CGACGTCTTATTGAAACAGTCCTGCAATCGCAGGAAGATATACCCCCAAT
TTGGACCGAAACCATCACCTGGACAAAGGAGGCCGTGGAGCTTTAACGTA
CAGGAATCCCAGATCAAACTACGCAGTGCGACGAAGAGACACCACGATGT
GGCTTGTGCAAGAAAAGAAGACTTGATTGCACATACCCTCCGTCAAGTGA
AGCGGATAGCCAGCATGCATCCACACCCCAAGATATGCCTGATGTGTTTC
CTGGTCCCGAAGGAGAACCGCAATCGGATAGGATGCTTGAGATGAAACTC
TTCCACCACTATCTAACAGAGACATACATCACACTCTGTCAAGGGCGTCT
AGATGCTCACCACTTTCAAGTGGTTGTCCCACGGATCGCGGTCTCCCATG
CCTTCTTGCTGGACAGTCTACTAGCAATGTCTGCTCTTCATCTAGCGTAC
CTGAACACTCATGATAACCGTCCATGGCTCGAGATTGCCCTTAAATACCA
GAACAGAGCCTGTTCAGCATTCACCCGTGTACTCGCGGAAATGACACCCG
AGAACTGCGCACCAGCATTCCTGTGCTCCATCTTCATTATGCTCTGCGCA
ACGGCCTACCCGTGTGTCACCCAGGATAAGCATACATTCGAGCCTTTGTC
CCATGTCTTGGAGATCCGGCAGCTCATAGCGGGATGTGCATTTCTTTTTG
AACAGCTTAGCGGCATGGAATATCGGGGTGACCTCCAAGGGTGGCTGAAG
TACAAGGATGACGAGATCGATCAAGATGGGAATCCCTACCAATGCCCTCC
CGCCGCAGTCATACCAAGTCCCGGAAGGGTTGTCTCCAATGTAAGAAACG
GCATGTGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:761288..762717 - |
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