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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:763242..765940+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001814-T1 ID=KJC3_001814-T1|Name=KJC3_001814-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2699bp|location=Sequence derived from alignment at ch2:763242..765940+ (Aspergillus niger KJC3)
GGACCATTCATTTGCAATGCTTTTTGGTCTCCTTCTATCCGCGTGGATGC
CTGTTTCACGATTGACCGAGAAGCCTGTTACTGAACTTGCCGGGTAGGCT
CGAGAATTCTTAATTAACTTCCTCTACAGTCCGAGGCAGCAGCAATTCTT
CATTATCCTCCCCACTCAGGACCCCGAATGGCTCTACGAGGGGAGGAAGA
GAGTCCGGGCTTGACCGTCCGACGCCACCGTATAGGATGTAGTATCTGGC
ACTCACAGTCTTCACTGTATCTGTGATTAACAAACTCCCTCTTTCATCCG
TCCTGCTCGCGCATCGCATGGGGTTCCAATAGACAACTCGTTTGTGATAT
ACTTCAGTCTCCATCGAGTTGGTACCACCTGCTGCTCTACATCTCTAAAG
CATCCCTGCCTGCAAGATGGTCTTTCATCCCTCGTCGCAAAGCATTCTTA
TCATTATTTCTTCTTGGGCATATCCTCATGCTGGACAACTAGTGGGGCTC
GCCAGCTGCGCGGTCTCCCACTACGGGCTACTAGCAGCCAATTCAGTCCG
AGATGCGGCCAGATCCCTGTCAATGCCACGTGACAACGGTGGATGGGGGC
CACGGAGCAGGATGAGCTTTACAGAACACAAATCAGTCAAGATAAAATCT
CAAGCGTTGCATGGTGCCTGTGGTCCTGATTGAATTGACAATCCACAATC
CGCAGCTCTACAAACAAGAATGAATGCGGAGACCCCCTCCCCGAACCAGC
GACTGCGGGTGGGGACTACCAGATCGCGGAGGGGTTGCATTACATGTCGG
TGAGCGAGGAAGCCCTGTGTCCTACCTGCTCCCCCGGCTCAACTCACTTA
CTCCTAATCTTGCGGCTACGGCAGAATTCGTCGCGTCAAATGTGATGAGC
GGAAGCCGGCTTGTTTTCGGTATGCAAACATTGGGAGATCCTGATGCTTC
CGTCGCGAAGAACCCCCACACTGACCACCCGGATAGATGTACCAGTACAG
ACCGGAGATGTGATGGTTATATGCCCATGCCTTATTCCATACGCATCACC
AAACAGCTGGCACAAGTTACTGCATTTGTCAGTCCAGCCGAGTCCCGAGC
CCTCGAGTTCTTCTTTCGCAAGTCTGCAGCGCACCTGGCTGGTTACTTCA
ATGCTTCGTTCTGGACCCGCACGGTTCTACAGCTCAGTCTGACCGAACCC
CCGATTCGCCAAGCGATTGCTGCGATTGGCTTTCTCTATGAAGTAGAGGT
GACGTCCACAACTCCGGGAATGGCACATCACTTGCTGTCTCACCGGTCCG
ACTTGGCGCTACATCTTTACAACCGGGCCATCCGTACCACCATTGATAAG
TTTTCATCAGGAATGGACGTTGTACCCCTAGTCATAGCAGCCAGCATTCT
GTTCGCAGCCCTTGAGTTCCTCCGAGGAAATGCTGCCGTGGCTGCATCAC
ATACCAGAAGCGGGCTTAACCTGGTGCGGTCCTGGCGGGAACATCGAGGG
CGATTCCACCACACGAAGAGTTCTCGGACACATTGGGTAGATGCTGAATT
GGCTCCAATATTGAACTCATTTTCTCTGAATACGTACGAACGATCAGGTC
TCAAACACCTCACAAGTGCGCCACGAGAAAAAGTGCTTGTCAATCCCGTG
GATGCTCAAGGCAAGCTCTTAGTCAATTGGCGGTTCCAAACATTTCATCA
GGCACGCACCGCCCTCCTTGACTTGATGCTTTACCACATCGGGACTTTTC
GCGACTGGCAAGATCTGGCCAGACTGACGGACCTCCCGTACTCGCCCGTT
CTGCGATGGCTCGATACTTTCGAACATGCCGCCCAGCGATGGATGGCAAG
CTTTGAATTGCTAGTGCAACGGAAGCAGTCGGCATGTGGACCAGCCATGG
ATAATGAGATCGATGCTACTCGCACGCTCTGGTATTGCCTCCGTCTAGGA
CTCGGTCGGTACCGTGTGGCCAATGAATGCGGCTGGGATGACTTTCGCGC
TGCCTACGAAGATATCGTCTTGATTGCCGAACGTCTGCTCAATGACTCGG
AACACTACCCGGATGATGTATCGAAAACGATGAGCCTTGACGTACAGTTG
TTGTATCCGTTGCAGGCCGTCGCATGGAAGTGCCGCTGGCCGGACCTTCG
CCGTCGGGCCCTGGATCTGCTACAACGACTTCCGAAGCAAGAGCTGTTCT
TTTATACCCCGAACTACCACACCGTCTGCAGCCGGATCATGGAACTTGAG
GAGAGTATGATGGGCAATGACATGCTTCCCCCAGATCACTCCCGAATCTA
TAGTTTCACCATCACCCCTACCCCCGCCACGACGGCGGACCACCCTATTT
ACTCCGTCACTTTTACTACGTTCCCACATGGCCGAAGTAGCGAGCCACAC
TTTCACACCGAATCGCTATGGCTTCATCCATCGCAGGCGGGGGTCGCCGC
AACCATTCCACCTGTTGATATGATGCAACGTCGCGACTGGTCACCGGTCG
CTCAGACAAATGCTCACACTCAGCTGTCCTCAATACCTGCAACATGGATA
ATGTAGATAACACAGGCGCCTGACGATAGCCCTCAAACAGAATTTCTAGC
CACATAGATGGTTAACTTTAGCAGCCAAGCAGAATATATGTTCAACCATT
CCACATGGATCGTTACATCGAACAAGTCGATACGTATAGTACTTTCACG back to topCoding sequence (CDS) from alignment at ch2:763242..765940+ >KJC3_001814-T1 ID=KJC3_001814-T1|Name=KJC3_001814-T1|organism=Aspergillus niger KJC3|type=CDS|length=5085bp|location=Sequence derived from alignment at ch2:763242..765940+ (Aspergillus niger KJC3)
ATGAATGCGGAGACCCCCTCCCCGAACCAGCGACTGCGGGTGGGGACTAC
CAGATCGCGGAGGGGTTGCATTACATGTCGAATTCGTCGCGTCAAATGTG
ATGAGCGGAAGCCGGCTTGTTTTCGATGTACCAGTACAGACCGGAGATGT
GATGGTTATATGCCCATGCCTTATTCCATACGCATCACCAAACAGCTGGC
ACAAGTTACTGCATTTGTCAGTCCAGCCGAGTCCCGAGCCCTCGAGTTCT
TCTTTCGCAAGTCTGCAGCGCACCTGGCTGGTTACTTCAATGCTTCGTTC
TGGACCCGCACGGTTCTACAGCTCAGTCTGACCGAACCCCCGATTCGCCA
AGCGATTGCTGCGATTGGCTTTCTCTATGAAGTAGAGGTGACGTCCACAA
CTCCGGGAATGGCACATCACTTGCTGTCTCACCGGTCCGACTTGGCGCTA
CATCTTTACAACCGGGCCATCCGTACCACCATTGATAAGTTTTCATCAGG
AATGGACGTTGTACCCCTAGTCATAGCAGCCAGCATTCTGTTCGCAGCCC
TTGAGTTCCTCCGAGGAAATGCTGCCGTGGCTGCATCACATACCAGAAGC
GGGCTTAACCTGGTGCGGTCCTGGCGGGAACATCGAGGGCGATTCCACCA
CACGAAGAGTTCTCGGACACATTGGGTAGATGCTGAATTGGCTCCAATAT
TGAACTCATTTTCTCTGAATACGTACGAACGATCAGGTCTCAAACACCTC
ACAAGTGCGCCACGAGAAAAAGTGCTTGTCAATCCCGTGGATGCTCAAGG
CAAGCTCTTAGTCAATTGGCGGTTCCAAACATTTCATCAGGCACGCACCG
CCCTCCTTGACTTGATGCTTTACCACATCGGGACTTTTCGCGACTGGCAA
GATCTGGCCAGACTGACGGACCTCCCGTACTCGCCCGTTCTGCGATGGCT
CGATACTTTCGAACATGCCGCCCAGCGATGGATGGCAAGCTTTGAATTGC
TAGTGCAACGGAAGCAGTCGGCATGTGGACCAGCCATGGATAATGAGATC
GATGCTACTCGCACGCTCTGGTATTGCCTCCGTCTAGGACTCGGTCGGTA
CCGTGTGGCCAATGAATGCGGCTGGGATGACTTTCGCGCTGCCTACGAAG
ATATCGTCTTGATTGCCGAACGTCTGCTCAATGACTCGGAACACTACCCG
GATGATGTATCGAAAACGATGAGCCTTGACGTACAGTTGTTGTATCCGTT
GCAGGCCGTCGCATGGAAGTGCCGCTGGCCGGACCTTCGCCGTCGGGCCC
TGGATCTGCTACAACGACTTCCGAAGCAAGAGCTGTTCTTTTATACCCCG
AACTACCACACCGTCTGCAGCCGGATCATGGAACTTGAGGAGAGTATGAT
GGGCAATGACATGCTTCCCCCAGATCACTCCCGAATCTATAGTTTCACCA
TCACCCCTACCCCCGCCACGACGGCGGACCACCCTATTTACTCCGTCACT
TTTACTACGTTCCCACATGGCCGAAGTAGCGAGCCACACTTTCACACCGA
ATCGCTATGGCTTCATCCATCGCAGGCGGGGGTCGCCGCAACCATTCCAC
CTGTTGATATGATGCAACGTCGCGACTGGTCACCGGTCGCTCAGACAAAT
GCTCACACTCAGCTGTCCTCAATACCTGCAACATGGATAATGTAGATGAA
TGCGGAGACCCCCTCCCCGAACCAGCGACTGCGGGTGGGGACTACCAGAT
CGCGGAGGGGTTGCATTACATGTCGAATTCGTCGCGTCAAATGTGATGAG
CGGAAGCCGGCTTGTTTTCGATGTACCAGTACAGACCGGAGATGTGATGG
TTATATGCCCATGCCTTATTCCATACGCATCACCAAACAGCTGGCACAAG
TTACTGCATTTGTCAGTCCAGCCGAGTCCCGAGCCCTCGAGTTCTTCTTT
CGCAAGTCTGCAGCGCACCTGGCTGGTTACTTCAATGCTTCGTTCTGGAC
CCGCACGGTTCTACAGCTCAGTCTGACCGAACCCCCGATTCGCCAAGCGA
TTGCTGCGATTGGCTTTCTCTATGAAGTAGAGGTGACGTCCACAACTCCG
GGAATGGCACATCACTTGCTGTCTCACCGGTCCGACTTGGCGCTACATCT
TTACAACCGGGCCATCCGTACCACCATTGATAAGTTTTCATCAGGAATGG
ACGTTGTACCCCTAGTCATAGCAGCCAGCATTCTGTTCGCAGCCCTTGAG
TTCCTCCGAGGAAATGCTGCCGTGGCTGCATCACATACCAGAAGCGGGCT
TAACCTGGTGCGGTCCTGGCGGGAACATCGAGGGCGATTCCACCACACGA
AGAGTTCTCGGACACATTGGGTAGATGCTGAATTGGCTCCAATATTGAAC
TCATTTTCTCTGAATACGTACGAACGATCAGGTCTCAAACACCTCACAAG
TGCGCCACGAGAAAAAGTGCTTGTCAATCCCGTGGATGCTCAAGGCAAGC
TCTTAGTCAATTGGCGGTTCCAAACATTTCATCAGGCACGCACCGCCCTC
CTTGACTTGATGCTTTACCACATCGGGACTTTTCGCGACTGGCAAGATCT
GGCCAGACTGACGGACCTCCCGTACTCGCCCGTTCTGCGATGGCTCGATA
CTTTCGAACATGCCGCCCAGCGATGGATGGCAAGCTTTGAATTGCTAGTG
CAACGGAAGCAGTCGGCATGTGGACCAGCCATGGATAATGAGATCGATGC
TACTCGCACGCTCTGGTATTGCCTCCGTCTAGGACTCGGTCGGTACCGTG
TGGCCAATGAATGCGGCTGGGATGACTTTCGCGCTGCCTACGAAGATATC
GTCTTGATTGCCGAACGTCTGCTCAATGACTCGGAACACTACCCGGATGA
TGTATCGAAAACGATGAGCCTTGACGTACAGTTGTTGTATCCGTTGCAGG
CCGTCGCATGGAAGTGCCGCTGGCCGGACCTTCGCCGTCGGGCCCTGGAT
CTGCTACAACGACTTCCGAAGCAAGAGCTGTTCTTTTATACCCCGAACTA
CCACACCGTCTGCAGCCGGATCATGGAACTTGAGGAGAGTATGATGGGCA
ATGACATGCTTCCCCCAGATCACTCCCGAATCTATAGTTTCACCATCACC
CCTACCCCCGCCACGACGGCGGACCACCCTATTTACTCCGTCACTTTTAC
TACGTTCCCACATGGCCGAAGTAGCGAGCCACACTTTCACACCGAATCGC
TATGGCTTCATCCATCGCAGGCGGGGGTCGCCGCAACCATTCCACCTGTT
GATATGATGCAACGTCGCGACTGGTCACCGGTCGCTCAGACAAATGCTCA
CACTCAGCTGTCCTCAATACCTGCAACATGGATAATGTAGATGAATGCGG
AGACCCCCTCCCCGAACCAGCGACTGCGGGTGGGGACTACCAGATCGCGG
AGGGGTTGCATTACATGTCGAATTCGTCGCGTCAAATGTGATGAGCGGAA
GCCGGCTTGTTTTCGATGTACCAGTACAGACCGGAGATGTGATGGTTATA
TGCCCATGCCTTATTCCATACGCATCACCAAACAGCTGGCACAAGTTACT
GCATTTGTCAGTCCAGCCGAGTCCCGAGCCCTCGAGTTCTTCTTTCGCAA
GTCTGCAGCGCACCTGGCTGGTTACTTCAATGCTTCGTTCTGGACCCGCA
CGGTTCTACAGCTCAGTCTGACCGAACCCCCGATTCGCCAAGCGATTGCT
GCGATTGGCTTTCTCTATGAAGTAGAGGTGACGTCCACAACTCCGGGAAT
GGCACATCACTTGCTGTCTCACCGGTCCGACTTGGCGCTACATCTTTACA
ACCGGGCCATCCGTACCACCATTGATAAGTTTTCATCAGGAATGGACGTT
GTACCCCTAGTCATAGCAGCCAGCATTCTGTTCGCAGCCCTTGAGTTCCT
CCGAGGAAATGCTGCCGTGGCTGCATCACATACCAGAAGCGGGCTTAACC
TGGTGCGGTCCTGGCGGGAACATCGAGGGCGATTCCACCACACGAAGAGT
TCTCGGACACATTGGGTAGATGCTGAATTGGCTCCAATATTGAACTCATT
TTCTCTGAATACGTACGAACGATCAGGTCTCAAACACCTCACAAGTGCGC
CACGAGAAAAAGTGCTTGTCAATCCCGTGGATGCTCAAGGCAAGCTCTTA
GTCAATTGGCGGTTCCAAACATTTCATCAGGCACGCACCGCCCTCCTTGA
CTTGATGCTTTACCACATCGGGACTTTTCGCGACTGGCAAGATCTGGCCA
GACTGACGGACCTCCCGTACTCGCCCGTTCTGCGATGGCTCGATACTTTC
GAACATGCCGCCCAGCGATGGATGGCAAGCTTTGAATTGCTAGTGCAACG
GAAGCAGTCGGCATGTGGACCAGCCATGGATAATGAGATCGATGCTACTC
GCACGCTCTGGTATTGCCTCCGTCTAGGACTCGGTCGGTACCGTGTGGCC
AATGAATGCGGCTGGGATGACTTTCGCGCTGCCTACGAAGATATCGTCTT
GATTGCCGAACGTCTGCTCAATGACTCGGAACACTACCCGGATGATGTAT
CGAAAACGATGAGCCTTGACGTACAGTTGTTGTATCCGTTGCAGGCCGTC
GCATGGAAGTGCCGCTGGCCGGACCTTCGCCGTCGGGCCCTGGATCTGCT
ACAACGACTTCCGAAGCAAGAGCTGTTCTTTTATACCCCGAACTACCACA
CCGTCTGCAGCCGGATCATGGAACTTGAGGAGAGTATGATGGGCAATGAC
ATGCTTCCCCCAGATCACTCCCGAATCTATAGTTTCACCATCACCCCTAC
CCCCGCCACGACGGCGGACCACCCTATTTACTCCGTCACTTTTACTACGT
TCCCACATGGCCGAAGTAGCGAGCCACACTTTCACACCGAATCGCTATGG
CTTCATCCATCGCAGGCGGGGGTCGCCGCAACCATTCCACCTGTTGATAT
GATGCAACGTCGCGACTGGTCACCGGTCGCTCAGACAAATGCTCACACTC
AGCTGTCCTCAATACCTGCAACATGGATAATGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001814-T1.utr5p1 | KJC3_001814-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001814-T1.utr3p1 | KJC3_001814-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:763242..765940 + |
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