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KJC3_001838-T1, KJC3_001838-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001838-T1
Unique NameKJC3_001838-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:836049..836785+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001838-T1 ID=KJC3_001838-T1|Name=KJC3_001838-T1|organism=Aspergillus niger KJC3|type=mRNA|length=737bp|location=Sequence derived from alignment at ch2:836049..836785+ (Aspergillus niger KJC3)
ATGGATTCCGCCAAGCAGCCCGCTAAGCTCGTCAAGGTCACCCGTGTCCT
CGGCCGTACCGGTACGTCGTGAATATCTCAATTTTCCGAATTTCGATGCC
TTTCGCCTGGATATATACAATTGCGGTGTTTCCGCAACGGCGTGGGGATG
GTACCTTTTGCTTGAGAGCAGATTCTAACAAGCATTTTACTTTTTAGGAT
CCCGTGGTGGTGTCACCCAGGTCCGCGTCGAGTTCATGGACGATACCTCC
CGCAGCATCATCCGTAACGTCAAGGGCCCAGGTATGCGATTTCTCCGTTG
ATTGCAGTTGATGATATATATTTTCTACGGCTATGGTGGTGGCGCTGGTT
GGACCGAATCGAATTATTTCCCCTCGAAGAGAAAATCCCGCGAGAAGAAT
GGCAAAGAATGAGAGTGCGCACGCATCGGAAATCGACAACATCCACGATT
CTATAAGCGAAAAGGACGAATCTCCCAAACCCAACACGACGCACGCAGGA
ATCGAAGAGAAGGAATAAGGAAACCAAGCAGTATCGCGGGTTATTTTCAT
CTCCACGGGGAAATATCGCATTCAGTCCAGCCAGCCAGCCAACCAACCAG
TCGCTGCGTCATGTCCAAACCAAACCCATATATCGCACACATCAAGCTAA
CTAAACTCCTCTTCGTCGCAAACAGTCAAGGTCGACGACATCCTCTGCCT
GCTCGAGTCCGAACGCGAGGCCCGCCGTCTCCGTTAA
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Coding sequence (CDS) from alignment at ch2:836049..836785+

>KJC3_001838-T1 ID=KJC3_001838-T1|Name=KJC3_001838-T1|organism=Aspergillus niger KJC3|type=CDS|length=621bp|location=Sequence derived from alignment at ch2:836049..836785+ (Aspergillus niger KJC3)
ATGGATTCCGCCAAGCAGCCCGCTAAGCTCGTCAAGGTCACCCGTGTCCT
CGGCCGTACCGGATCCCGTGGTGGTGTCACCCAGGTCCGCGTCGAGTTCA
TGGACGATACCTCCCGCAGCATCATCCGTAACGTCAAGGGCCCAGTCAAG
GTCGACGACATCCTCTGCCTGCTCGAGTCCGAACGCGAGGCCCGCCGTCT
CCGTTAAATGGATTCCGCCAAGCAGCCCGCTAAGCTCGTCAAGGTCACCC
GTGTCCTCGGCCGTACCGGATCCCGTGGTGGTGTCACCCAGGTCCGCGTC
GAGTTCATGGACGATACCTCCCGCAGCATCATCCGTAACGTCAAGGGCCC
AGTCAAGGTCGACGACATCCTCTGCCTGCTCGAGTCCGAACGCGAGGCCC
GCCGTCTCCGTTAAATGGATTCCGCCAAGCAGCCCGCTAAGCTCGTCAAG
GTCACCCGTGTCCTCGGCCGTACCGGATCCCGTGGTGGTGTCACCCAGGT
CCGCGTCGAGTTCATGGACGATACCTCCCGCAGCATCATCCGTAACGTCA
AGGGCCCAGTCAAGGTCGACGACATCCTCTGCCTGCTCGAGTCCGAACGC
GAGGCCCGCCGTCTCCGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS28KJC3_001838Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001838-T1.exon1KJC3_001838-T1.exon1Aspergillus niger KJC3exon
KJC3_001838-T1.exon2KJC3_001838-T1.exon2Aspergillus niger KJC3exon
KJC3_001838-T1.exon3KJC3_001838-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001838-T1.cdsKJC3_001838-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001838-T1KJC3_001838-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR028626
DBxrefInterPro:IPR000289
DBxrefPFAM:PF01200
Product40S ribosomal protein S28
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:836049..836785 +
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