You are here

Home

KJC3_001841-T1, KJC3_001841-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001841-T1
Unique NameKJC3_001841-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:844513..846615-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001841-T1 ID=KJC3_001841-T1|Name=KJC3_001841-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2103bp|location=Sequence derived from alignment at ch2:844513..846615- (Aspergillus niger KJC3)
CTTAGACCAGAGTGGGACGCGGGAGCCCGGCCTCCATGGCATGGGCACAA
GGGCCAGCCACCGAACATTTCTGAGAGAGCAGGGACCCAGGGGCAAGCAG
TCTTTGGCGCTCAGGGGTTTCACACCGCTGTCCGTGGGAGACGGCGATCC
TGCCCTAAACGCCAGGCTGAAACAATGGGCCCCGCTTTTTGGCCCAGCAG
CTTACCCGGTGGCGTTTAATCACGTGATGGTCAGCCCTCCCCTCTCGTCG
CCAACCGCCGACCACCACACACACACACACACACACACACACCTTTTCCC
GAAGCTTGCTTTTTTTAACCCTCCCAGCTTCCCGAGTCGTCCACGACTAA
CCTCCAAAGACACCTCATACTAACCTCACCTGCAGTGAGGGGGAACACGT
GCAGCGGTTGCCTCCCTTGACGACCCTGTGTTTGCCACCCCCAAAGCTTC
AAACCTGCTTCTCCGCCTTGATCGCCCTTGTGTTGGCAGGCACAAGCTTC
GTGGCCTTGGTCAAGACAACACTTAAGGCTGCCGCTCTAGCGCCGGCAAG
AAGCTCCTGACTAGTCAAAGCTCAACCACTAATTACACTGCTTTCAGCGA
TCCGGTTACAGAAATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGA
TCGAATCCAGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATCAAG
AACTTGGACAGCGTGCGTCAATTCTTACTATAACCATGGTTCTTCTCTTG
ATGATGGGGACGATGGTTGACAGGTGATGCTAGAGGAGGGATGAGCTAGA
ATATTGGCTTACAGAACACCTTCGCCTGAATGGGGTGTATTGGGGCTTGA
CGGCTCTACATCTCCTTGGCCGTCCCGATGTCCTTCCTCGTGAAGATACC
ATCGATTTTGTTCTCTCGTGTCAACGGGAGAATGGCGGCTTCGGGGCAGC
TCCGGGCCATGATGCACACATGCTGTACACAGTATCGGCAGTGCAAATTC
TCGTAACCCTAGACGCGGTGGATGAGCTGGAGAAGCGCGGTCTAGGAGGA
AAAGAGAAGGTTGGCTCTTTCATCGCAGGGCTACAGGACAAAGACACTGG
CGCTTTCATGGGCGATGAATGGGGTGAGAGAGATACACGCTTTCTGTATG
GCGCGTTTAATGCACTCTCCCTTCTTGGGCTTCTTCACACAGTTGATGTG
CCCAAAGCCATTTCCTATGTCCAACAGTGTGAGAACTTGGACGGCGGCTA
TGGCATCCAGCCTGGAGCTGAGTCACATGCTGGTCAAATTTTCACTTGCG
TAGGAGCTCTGGCAATCGCCGGACGACTGGACTTGGTAAACAAGGACCGT
CTTGGAGGTTGGCTCAGCGAAAGACAGGTCGAAAATGGTGGTCTGAATGG
AAGGCCCGAGAAACTGCCCGATGCATGCTATAGCTGGTGGGTTGGTGCTA
GCTTAGCTATGATCGACAAACTCCACTGGATTGATAGTGGCAAGCTTTCT
GCTTTCATCTTGCGCTGTCAGGTATGTTATCCCTTCGCCATGGCCTTGCA
TGCATGGCACTGACGCAATCCAGGATTCGGAGGCTGGGGGTATCGGAGAC
AGACCAGGCAGCATGGTTGATGTGTTTCATACGCATTTTGCCATTGCCGG
TTTGAGCCTGTTGAAGTTCAATGGCATCCAAGAAGTAGATCCTGTTTAGT
GAGTTATGCAAACCTGCGCAACGCAGTGGTGCGGATAGCTAACTTTCTTG
TTTAGTTGTATGCCGAAGGCAATTACACAGAAATATCTGCAACGGTAATC
TTTGGCTGTATGATGACATCACCCTTTGAGTACTGTTTTTTGACGTAGGC
CTTACCTCCTGCAATCTAATAACCCGTTTTTCTTTATCTCCATGGATTAT
GGGATACAAGGCAGGAGAAGAGTGATTGGCACTGTGACTTATTTCCGCTT
CATACCCCCTCACAATAGCCTTATGGAAAGGCTGTTAAGACACAGTGGCA
CATGAATCGTAATCATAGTCAAGATATACAGTAGCTAGTTGATCAACATA
GAAGAGTATGAAATAAGTATCATCCTTGGAGTTGACTGATAAAGGTGTGG
AAG
back to top

Coding sequence (CDS) from alignment at ch2:844513..846615-

>KJC3_001841-T1 ID=KJC3_001841-T1|Name=KJC3_001841-T1|organism=Aspergillus niger KJC3|type=CDS|length=4020bp|location=Sequence derived from alignment at ch2:844513..846615- (Aspergillus niger KJC3)
TTGTATGCCGAAGGCAATTACACAGAAATATCTGCAACGGTAAGATTCGG
AGGCTGGGGGTATCGGAGACAGACCAGGCAGCATGGTTGATGTGTTTCAT
ACGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCAATGGCATCCA
AGAAGTAGATCCTGTTTAAGGAGGGATGAGCTAGAATATTGGCTTACAGA
ACACCTTCGCCTGAATGGGGTGTATTGGGGCTTGACGGCTCTACATCTCC
TTGGCCGTCCCGATGTCCTTCCTCGTGAAGATACCATCGATTTTGTTCTC
TCGTGTCAACGGGAGAATGGCGGCTTCGGGGCAGCTCCGGGCCATGATGC
ACACATGCTGTACACAGTATCGGCAGTGCAAATTCTCGTAACCCTAGACG
CGGTGGATGAGCTGGAGAAGCGCGGTCTAGGAGGAAAAGAGAAGGTTGGC
TCTTTCATCGCAGGGCTACAGGACAAAGACACTGGCGCTTTCATGGGCGA
TGAATGGGGTGAGAGAGATACACGCTTTCTGTATGGCGCGTTTAATGCAC
TCTCCCTTCTTGGGCTTCTTCACACAGTTGATGTGCCCAAAGCCATTTCC
TATGTCCAACAGTGTGAGAACTTGGACGGCGGCTATGGCATCCAGCCTGG
AGCTGAGTCACATGCTGGTCAAATTTTCACTTGCGTAGGAGCTCTGGCAA
TCGCCGGACGACTGGACTTGGTAAACAAGGACCGTCTTGGAGGTTGGCTC
AGCGAAAGACAGGTCGAAAATGGTGGTCTGAATGGAAGGCCCGAGAAACT
GCCCGATGCATGCTATAGCTGGTGGGTTGGTGCTAGCTTAGCTATGATCG
ACAAACTCCACTGGATTGATAGTGGCAAGCTTTCTGCTTTCATCTTGCGC
TGTCAGATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGATCGAATC
CAGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATCAAGAACTTGG
ACAGCTTGTATGCCGAAGGCAATTACACAGAAATATCTGCAACGGTAAGA
TTCGGAGGCTGGGGGTATCGGAGACAGACCAGGCAGCATGGTTGATGTGT
TTCATACGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCAATGGC
ATCCAAGAAGTAGATCCTGTTTAAGGAGGGATGAGCTAGAATATTGGCTT
ACAGAACACCTTCGCCTGAATGGGGTGTATTGGGGCTTGACGGCTCTACA
TCTCCTTGGCCGTCCCGATGTCCTTCCTCGTGAAGATACCATCGATTTTG
TTCTCTCGTGTCAACGGGAGAATGGCGGCTTCGGGGCAGCTCCGGGCCAT
GATGCACACATGCTGTACACAGTATCGGCAGTGCAAATTCTCGTAACCCT
AGACGCGGTGGATGAGCTGGAGAAGCGCGGTCTAGGAGGAAAAGAGAAGG
TTGGCTCTTTCATCGCAGGGCTACAGGACAAAGACACTGGCGCTTTCATG
GGCGATGAATGGGGTGAGAGAGATACACGCTTTCTGTATGGCGCGTTTAA
TGCACTCTCCCTTCTTGGGCTTCTTCACACAGTTGATGTGCCCAAAGCCA
TTTCCTATGTCCAACAGTGTGAGAACTTGGACGGCGGCTATGGCATCCAG
CCTGGAGCTGAGTCACATGCTGGTCAAATTTTCACTTGCGTAGGAGCTCT
GGCAATCGCCGGACGACTGGACTTGGTAAACAAGGACCGTCTTGGAGGTT
GGCTCAGCGAAAGACAGGTCGAAAATGGTGGTCTGAATGGAAGGCCCGAG
AAACTGCCCGATGCATGCTATAGCTGGTGGGTTGGTGCTAGCTTAGCTAT
GATCGACAAACTCCACTGGATTGATAGTGGCAAGCTTTCTGCTTTCATCT
TGCGCTGTCAGATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTGGGATC
GAATCCAGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATCAAGAA
CTTGGACAGCTTGTATGCCGAAGGCAATTACACAGAAATATCTGCAACGG
TAAGATTCGGAGGCTGGGGGTATCGGAGACAGACCAGGCAGCATGGTTGA
TGTGTTTCATACGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAAGTTCA
ATGGCATCCAAGAAGTAGATCCTGTTTAAGGAGGGATGAGCTAGAATATT
GGCTTACAGAACACCTTCGCCTGAATGGGGTGTATTGGGGCTTGACGGCT
CTACATCTCCTTGGCCGTCCCGATGTCCTTCCTCGTGAAGATACCATCGA
TTTTGTTCTCTCGTGTCAACGGGAGAATGGCGGCTTCGGGGCAGCTCCGG
GCCATGATGCACACATGCTGTACACAGTATCGGCAGTGCAAATTCTCGTA
ACCCTAGACGCGGTGGATGAGCTGGAGAAGCGCGGTCTAGGAGGAAAAGA
GAAGGTTGGCTCTTTCATCGCAGGGCTACAGGACAAAGACACTGGCGCTT
TCATGGGCGATGAATGGGGTGAGAGAGATACACGCTTTCTGTATGGCGCG
TTTAATGCACTCTCCCTTCTTGGGCTTCTTCACACAGTTGATGTGCCCAA
AGCCATTTCCTATGTCCAACAGTGTGAGAACTTGGACGGCGGCTATGGCA
TCCAGCCTGGAGCTGAGTCACATGCTGGTCAAATTTTCACTTGCGTAGGA
GCTCTGGCAATCGCCGGACGACTGGACTTGGTAAACAAGGACCGTCTTGG
AGGTTGGCTCAGCGAAAGACAGGTCGAAAATGGTGGTCTGAATGGAAGGC
CCGAGAAACTGCCCGATGCATGCTATAGCTGGTGGGTTGGTGCTAGCTTA
GCTATGATCGACAAACTCCACTGGATTGATAGTGGCAAGCTTTCTGCTTT
CATCTTGCGCTGTCAGATGTCCTTAGTTTCGGGTCCTGGTAGGGCTGCTG
GGATCGAATCCAGCTTGAATCTTAGTGTCGAAAGACATGTGGATTACATC
AAGAACTTGGACAGCTTGTATGCCGAAGGCAATTACACAGAAATATCTGC
AACGGTAAGATTCGGAGGCTGGGGGTATCGGAGACAGACCAGGCAGCATG
GTTGATGTGTTTCATACGCATTTTGCCATTGCCGGTTTGAGCCTGTTGAA
GTTCAATGGCATCCAAGAAGTAGATCCTGTTTAAGGAGGGATGAGCTAGA
ATATTGGCTTACAGAACACCTTCGCCTGAATGGGGTGTATTGGGGCTTGA
CGGCTCTACATCTCCTTGGCCGTCCCGATGTCCTTCCTCGTGAAGATACC
ATCGATTTTGTTCTCTCGTGTCAACGGGAGAATGGCGGCTTCGGGGCAGC
TCCGGGCCATGATGCACACATGCTGTACACAGTATCGGCAGTGCAAATTC
TCGTAACCCTAGACGCGGTGGATGAGCTGGAGAAGCGCGGTCTAGGAGGA
AAAGAGAAGGTTGGCTCTTTCATCGCAGGGCTACAGGACAAAGACACTGG
CGCTTTCATGGGCGATGAATGGGGTGAGAGAGATACACGCTTTCTGTATG
GCGCGTTTAATGCACTCTCCCTTCTTGGGCTTCTTCACACAGTTGATGTG
CCCAAAGCCATTTCCTATGTCCAACAGTGTGAGAACTTGGACGGCGGCTA
TGGCATCCAGCCTGGAGCTGAGTCACATGCTGGTCAAATTTTCACTTGCG
TAGGAGCTCTGGCAATCGCCGGACGACTGGACTTGGTAAACAAGGACCGT
CTTGGAGGTTGGCTCAGCGAAAGACAGGTCGAAAATGGTGGTCTGAATGG
AAGGCCCGAGAAACTGCCCGATGCATGCTATAGCTGGTGGGTTGGTGCTA
GCTTAGCTATGATCGACAAACTCCACTGGATTGATAGTGGCAAGCTTTCT
GCTTTCATCTTGCGCTGTCAGATGTCCTTAGTTTCGGGTCCTGGTAGGGC
TGCTGGGATCGAATCCAGCTTGAATCTTAGTGTCGAAAGACATGTGGATT
ACATCAAGAACTTGGACAGC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0018344protein geranylgeranylation
Vocabulary: Molecular Function
TermDefinition
GO:0004663Rab geranylgeranyltransferase activity
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001841KJC3_001841Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001841-T1KJC3_001841-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001841-T1.cdsKJC3_001841-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001841-T1.utr3p1KJC3_001841-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001841-T1.exon5KJC3_001841-T1.exon5Aspergillus niger KJC3exon
KJC3_001841-T1.exon4KJC3_001841-T1.exon4Aspergillus niger KJC3exon
KJC3_001841-T1.exon3KJC3_001841-T1.exon3Aspergillus niger KJC3exon
KJC3_001841-T1.exon2KJC3_001841-T1.exon2Aspergillus niger KJC3exon
KJC3_001841-T1.exon1KJC3_001841-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001841-T1.utr5p2KJC3_001841-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001841-T1.utr5p1KJC3_001841-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263G3M
DBxrefInterPro:IPR008930
DBxrefInterPro:IPR026873
DBxrefInterPro:IPR001330
DBxrefPFAM:PF00432
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:844513..846615 -
Powered by Drupal