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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:853143..854391- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001844-T1 ID=KJC3_001844-T1|Name=KJC3_001844-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1249bp|location=Sequence derived from alignment at ch2:853143..854391- (Aspergillus niger KJC3)
CCTTTGCGCCCAGTTCTCCAGTCTTTTTTGGAGTCCCTGTGTGATACTCT
CAACCTCAACCCCCAGAGTATCTTGTTCGCCAGTTGCGCGACCAAAAGTT
CAAAATGGCGTCTACCGACTCCAAGCCCAAGCCGGAGAGACTGTAAGTCG
AATCCACCCCCCATTTGCGTGGGGAAAGATTATCATCTATCTATACAAAC
TCCGTTAAACTTGAATAAACACCCATACTGATTCCTCAATGATGATACTA
TCAGGCCCGTGACAGTCTCTAAGCCGACCCCATACACATTCGACCTCGGT
CATCTGCTTGCGAACGATCCCAACCCTCTCGAGATCTCCCGCTCCGAACC
CTTGGACGTCAGTCTCAAGGCCACAGCCCGGGATGGCACCCAGTCTCTTC
TCAACCAGCTCCTGACCACCTGCCCCATCACCTCCTCCCAACAGGGTGTT
CTCCTGACTCTCCCGTCTCCCTCCACTGTCCTCCCGCGCTTCAAGCCTCT
TCCCACCCCCAAGCCCCCGACCAAGTGGGAGCTGTTCGCCCGCAAGAAGG
GTATTGGCAAATACAGCAGCAGGCCTGGCGCAGCATTGGCCGATAAGGAG
CGTCGCAAGAAGTTGGTGTACGATGAAGAGAAGGGCGAGTGGGTTCCTCG
CTGGGGTTACAAGGGCAAGAACAAGTCCGATGATGAATGGCTTGTTGAGG
TGAACGAGAAGGATTGGAAGAAGGAAGAAGAGGCGGCCGCTAAGGGAAGC
TCGATCCGTGGACTATCTCGCGCCGAACGCAAAGACAGGATACGCCGCAA
CGAGAGGAAAATGAGAGCGAATGAGCGCAAGAACAGGAAGTCGGGTGGTG
GTTAAAATATACTGATGATGTGTATTATGTGCTGTGTGTGTTGTTGTGTC
TGATAACGATTTTTGTCAAGAGTCGAGGCCGTATAACAAGTTTTTGCGGA
TCTTGCCTTGGTTTTAATTTTTCGTTCTTTCACTGGGGCTCAAATGTTAA
GGCGTTCGGCTTGGAGTCGCTGGGCTTGGATGTCTGTCAATGTTGCCTTT
GGTTTGGGACTTGTTCGTCTCGCCGGGCTCGAAAAGCAATATCACATTTT
ACTACCCCTCTAAGTATTTGTCTTATTTCTTGATCTTCTATGGGGTCCGC
ACCATAACTGGGGCTAATGCTCGACTTCACATGTACTACTTGTTCACTTG
TAGATACGCCTCTATACTCAAATACAAATAGACCATCCAGCCTTCCAAT back to topCoding sequence (CDS) from alignment at ch2:853143..854391- >KJC3_001844-T1 ID=KJC3_001844-T1|Name=KJC3_001844-T1|organism=Aspergillus niger KJC3|type=CDS|length=1278bp|location=Sequence derived from alignment at ch2:853143..854391- (Aspergillus niger KJC3)
GCCCGTGACAGTCTCTAAGCCGACCCCATACACATTCGACCTCGGTCATC
TGCTTGCGAACGATCCCAACCCTCTCGAGATCTCCCGCTCCGAACCCTTG
GACGTCAGTCTCAAGGCCACAGCCCGGGATGGCACCCAGTCTCTTCTCAA
CCAGCTCCTGACCACCTGCCCCATCACCTCCTCCCAACAGGGTGTTCTCC
TGACTCTCCCGTCTCCCTCCACTGTCCTCCCGCGCTTCAAGCCTCTTCCC
ACCCCCAAGCCCCCGACCAAGTGGGAGCTGTTCGCCCGCAAGAAGGGTAT
TGGCAAATACAGCAGCAGGCCTGGCGCAGCATTGGCCGATAAGGAGCGTC
GCAAGAAGTTGGTGTACGATGAAGAGAAGGGCGAGTGGGTTCCTCGCTGG
GGTTACAAGGGCAAGAACAAGTCCGATGATGAATGGCTTGTTGAGGTGAA
CGAGAAGGATTGGAAGAAGGAAGAAGAGGCGGCCGCTAAGGGAAGCTCGA
TCCGTGGACTATCTCGCGCCGAACGCAAAGACAGGATACGCCGCAACGAG
AGGAAAATGAGAGCGAATGAGCGCAAGAACAGGAAGTCGGGTGGTGGTTA
AATGGCGTCTACCGACTCCAAGCCCAAGCCGGAGAGACTGCCCGTGACAG
TCTCTAAGCCGACCCCATACACATTCGACCTCGGTCATCTGCTTGCGAAC
GATCCCAACCCTCTCGAGATCTCCCGCTCCGAACCCTTGGACGTCAGTCT
CAAGGCCACAGCCCGGGATGGCACCCAGTCTCTTCTCAACCAGCTCCTGA
CCACCTGCCCCATCACCTCCTCCCAACAGGGTGTTCTCCTGACTCTCCCG
TCTCCCTCCACTGTCCTCCCGCGCTTCAAGCCTCTTCCCACCCCCAAGCC
CCCGACCAAGTGGGAGCTGTTCGCCCGCAAGAAGGGTATTGGCAAATACA
GCAGCAGGCCTGGCGCAGCATTGGCCGATAAGGAGCGTCGCAAGAAGTTG
GTGTACGATGAAGAGAAGGGCGAGTGGGTTCCTCGCTGGGGTTACAAGGG
CAAGAACAAGTCCGATGATGAATGGCTTGTTGAGGTGAACGAGAAGGATT
GGAAGAAGGAAGAAGAGGCGGCCGCTAAGGGAAGCTCGATCCGTGGACTA
TCTCGCGCCGAACGCAAAGACAGGATACGCCGCAACGAGAGGAAAATGAG
AGCGAATGAGCGCAAGAACAGGAAGTCGGGTGGTGGTTAAATGGCGTCTA
CCGACTCCAAGCCCAAGCCGGAGAGACT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042254 | ribosome biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001844-T1.utr3p1 | KJC3_001844-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001844-T1.utr5p1 | KJC3_001844-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007023 |
| DBxref | PFAM:PF04939 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:853143..854391 - |
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