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KJC3_001852-T2, KJC3_001852-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001852-T2
Unique NameKJC3_001852-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:873536..874870-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001852-T2 ID=KJC3_001852-T2|Name=KJC3_001852-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1335bp|location=Sequence derived from alignment at ch2:873536..874870- (Aspergillus niger KJC3)
TTATCTGAATCTCCCCGGCGGGGTTGACCAGAATTACCAGCACAAGACGA
GCTCTAAATCCAGGGCTATAAGCTGGTAGTATTCCCCACGTCAACCGCTC
AATTTCCTCCAGAGGCCCCAATCGACCATCAACCACAATCAACCCATCAC
AATAATGCCTCTCCCCCAAATCCTAGTCGGCAAAGTCGCCGCCATTACAG
GCGGTTTAACCGGTATTGGCAGGGTAAGGCGAGCAGACACAAGCAAATGA
ACTCACAGTCATCCCCAAGGCCAGTCTAACATGATCTTCTTTTTAGGCCA
TCGCTCTCGAATACCTCCGCCACGGCGCAAAAGTAGCCGTAAACCACCTC
GGCGGATCCAAAGAAGAGCCCCTCATCGAAGCGATGCGCAAAGACGTATC
TGAGATTATCGGGTCCAATAACGACAGTGAGCAGAGCAGCAGCAGATTCA
TCCTCGTTGCAGGAGACGTAACACAGCCCGAGACGGGGCGGGAGTTCGTA
GCCAAAGCCGTGGAAGCCTTTGGACGACTCGATGTGTTCGTGAGTAATGC
GGGAGTGTGCAAGTTCGAGGAGTTTCTCGAGTAAGTGGTCAACCCACCCC
CTTAATAACTTTCCTTTTGTTTGTCTACCGTCTGGAAGAGCCATTTCTAA
CTGCCTTATGTTGGCCTACTGTGTAGAGTCGACCCCCCTCTCCTCGGCCA
CACAATCAACACCAACCTCTGTGGCGCATTCTGGGCAACACAAGCAGCAG
CACGGCAAATGGCGCTGGCTCAATCGCCACCGGGAGGCTCCATTATCGGG
ATTAGTTCTATCTCTGCACTTGTTGGGGGTGGACAGCAGACGCATTACAC
GCCCACCAAGGCGGGGGTGCTTAGTCTTATGCAGTCGTGTGCGGTGGCAT
TGGGCAAATACGGCATCAGATGTAATGCGCTGCTGCCGGGAACGATCCGG
ACTCAGCTGAATGATGAGGATATGAGTGATCCGGTGAAGAGGACGTATAT
GGAGGGCAGGATTCCGTTGGGACGGTTGGGTCAGCCACCGGATTTGGCGG
GGCCGGCGGTGTTTTTGGCTTGTGAGGAGTTGAGTGGTTATGTGGTAAGT
TTTCTTCTCTCAGCTTTATGTTGGATGTTCTGGAAGAGGCTGCTAATGTG
AATCAATAGACTGGGGCGCAGATACTTGTGGATGGGGGGCTTTTCGTGAA
TCTTCAGTAAATGAAACGATATTATTGTGATGATCTCTCTGATGTGGACA
TACTTGGTTATGGCGATCGGTGTACATACATACTTCTAGCATATGAATCG
AATCAAGTACTACTATCTAGATTTCAATCGCATAT
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Coding sequence (CDS) from alignment at ch2:873536..874870-

>KJC3_001852-T2 ID=KJC3_001852-T2|Name=KJC3_001852-T2|organism=Aspergillus niger KJC3|type=CDS|length=1998bp|location=Sequence derived from alignment at ch2:873536..874870- (Aspergillus niger KJC3)
ACTGGGGCGCAGATACTTGTGGATGGGGGGCTTTTCGTGAATCTTCAGTA
AAGTCGACCCCCCTCTCCTCGGCCACACAATCAACACCAACCTCTGTGGC
GCATTCTGGGCAACACAAGCAGCAGCACGGCAAATGGCGCTGGCTCAATC
GCCACCGGGAGGCTCCATTATCGGGATTAGTTCTATCTCTGCACTTGTTG
GGGGTGGACAGCAGACGCATTACACGCCCACCAAGGCGGGGGTGCTTAGT
CTTATGCAGTCGTGTGCGGTGGCATTGGGCAAATACGGCATCAGATGTAA
TGCGCTGCTGCCGGGAACGATCCGGACTCAGCTGAATGATGAGGATATGA
GTGATCCGGTGAAGAGGACGTATATGGAGGGCAGGATTCCGTTGGGACGG
TTGGGTCAGCCACCGGATTTGGCGGGGCCGGCGGTGTTTTTGGCTTGTGA
GGAGTTGAGTGGTTATGTGATGCGCAAAGACGTATCTGAGATTATCGGGT
CCAATAACGACAGTGAGCAGAGCAGCAGCAGATTCATCCTCGTTGCAGGA
GACGTAACACAGCCCGAGACGGGGCGGGAGTTCGTAGCCAAAGCCGTGGA
AGCCTTTGGACGACTCGATGTGTTCGTGAGTAATGCGGGAGTGTGCAAGT
TCGAGGAGTTTCTCGAACTGGGGCGCAGATACTTGTGGATGGGGGGCTTT
TCGTGAATCTTCAGTAAAGTCGACCCCCCTCTCCTCGGCCACACAATCAA
CACCAACCTCTGTGGCGCATTCTGGGCAACACAAGCAGCAGCACGGCAAA
TGGCGCTGGCTCAATCGCCACCGGGAGGCTCCATTATCGGGATTAGTTCT
ATCTCTGCACTTGTTGGGGGTGGACAGCAGACGCATTACACGCCCACCAA
GGCGGGGGTGCTTAGTCTTATGCAGTCGTGTGCGGTGGCATTGGGCAAAT
ACGGCATCAGATGTAATGCGCTGCTGCCGGGAACGATCCGGACTCAGCTG
AATGATGAGGATATGAGTGATCCGGTGAAGAGGACGTATATGGAGGGCAG
GATTCCGTTGGGACGGTTGGGTCAGCCACCGGATTTGGCGGGGCCGGCGG
TGTTTTTGGCTTGTGAGGAGTTGAGTGGTTATGTGATGCGCAAAGACGTA
TCTGAGATTATCGGGTCCAATAACGACAGTGAGCAGAGCAGCAGCAGATT
CATCCTCGTTGCAGGAGACGTAACACAGCCCGAGACGGGGCGGGAGTTCG
TAGCCAAAGCCGTGGAAGCCTTTGGACGACTCGATGTGTTCGTGAGTAAT
GCGGGAGTGTGCAAGTTCGAGGAGTTTCTCGAACTGGGGCGCAGATACTT
GTGGATGGGGGGCTTTTCGTGAATCTTCAGTAAAGTCGACCCCCCTCTCC
TCGGCCACACAATCAACACCAACCTCTGTGGCGCATTCTGGGCAACACAA
GCAGCAGCACGGCAAATGGCGCTGGCTCAATCGCCACCGGGAGGCTCCAT
TATCGGGATTAGTTCTATCTCTGCACTTGTTGGGGGTGGACAGCAGACGC
ATTACACGCCCACCAAGGCGGGGGTGCTTAGTCTTATGCAGTCGTGTGCG
GTGGCATTGGGCAAATACGGCATCAGATGTAATGCGCTGCTGCCGGGAAC
GATCCGGACTCAGCTGAATGATGAGGATATGAGTGATCCGGTGAAGAGGA
CGTATATGGAGGGCAGGATTCCGTTGGGACGGTTGGGTCAGCCACCGGAT
TTGGCGGGGCCGGCGGTGTTTTTGGCTTGTGAGGAGTTGAGTGGTTATGT
GATGCGCAAAGACGTATCTGAGATTATCGGGTCCAATAACGACAGTGAGC
AGAGCAGCAGCAGATTCATCCTCGTTGCAGGAGACGTAACACAGCCCGAG
ACGGGGCGGGAGTTCGTAGCCAAAGCCGTGGAAGCCTTTGGACGACTCGA
TGTGTTCGTGAGTAATGCGGGAGTGTGCAAGTTCGAGGAGTTTCTCGA
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DHG2_1KJC3_001852Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001852-T2KJC3_001852-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001852-T2.cdsKJC3_001852-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001852-T2.utr3p1KJC3_001852-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001852-T2.exon3KJC3_001852-T2.exon3Aspergillus niger KJC3exon
KJC3_001852-T2.exon2KJC3_001852-T2.exon2Aspergillus niger KJC3exon
KJC3_001852-T2.exon1KJC3_001852-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001852-T2.utr5p1KJC3_001852-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR002347
DBxrefPFAM:PF13561
DBxrefPFAM:PF00106
Product variant 2
ProductL-rhamnose-1-dehydrogenase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:873536..874870 -
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