You are here

Home

KJC3_001860-T1, KJC3_001860-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001860-T1
Unique NameKJC3_001860-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:902149..903288-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001860-T1 ID=KJC3_001860-T1|Name=KJC3_001860-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1140bp|location=Sequence derived from alignment at ch2:902149..903288- (Aspergillus niger KJC3)
GTACCTGAAAATCACCCCGATGAAGCGGAGCGGGATTGTAGATCTGATTG
GGGGAGGCCATCCGGGCCGGATAAACCCTGTCACCGGGGCCCGCCAAGAT
TGTGTGGATGGAATCATTCCAGCATCCGTTCGTCAGTCCGCCCGCTTCAT
TTTCTATATCAGATCTAGGCGAGGGACTCTTGTTTCCACCTAGAAGAAAA
ACAGTAAGTCATCTGGGGAGATAAATTGTTTGACTTGAGAGACACGTGCT
GAGCTGAAAGTAGCCGCTTAATACCCTAATCAATTCGCAATGGCGTCACA
ACTTCTTCCTCTTGGTAATTGACCCTGTCAGAAGCCGCGTATACATGGCG
ATCGTTTGATTGATTGTTTATTAACATGCACGACAGAACTGATCGACAAG
TGTGTCGGATCCAGGATATGGGTCATCATGAAGAATGACAAAGGTCGGCA
TGAACATCTCCCTGCGGGGGAGGGGTAGACGATAAGCTAGCTAGCTAACA
TGCATTCAGAATTCGCTGGAACGCTGCTTGGATTCGATGACTACGTTAGT
AAGTATATTTCCTATCGTCGGTTTACGGTGTATGAGATAGAGCGTGAACT
GACCTGCTACAGACATGGTCTTGGAGGACGTGACTGAGTTGTAAGTCCCT
ATATCTGCTGTCTGGATTGAGCTTCCTATCTCTGGAGCTCTTCTTTCTTA
GCTGTTGTTCTCTGTGTGTGAAGTAAAGACATTACTAAACATGCGACAGC
GATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAA
CAACGTCTGCATGGTATGCCTCCAGCCGCGCCCTTTCTGTTACTGATTAT
GCTCCATACTAACACTTTCAATTATCAAGTTGATCCCCGGTGGTGAGGGA
CCCGTCGGTAGCTCTTAGGCCATGATATCCACGATTCTTCTTCTTTGATA
TGTCAAAATGATTTTAGAATGAACGCTCATGATTGAGATAGAAAGTAGTA
ATGATGGAGTTTACGTCTGGCATTAAACCCTTGGGCAGTAAGGTGTCGAT
TGTTACAGATGCAATTGGTTGTAGTTGTCACAGTCAGACTACAGAGTACT
CTCTTCTGGGATTATCTCCATGCATAACCAAATTCTTTTG
back to top

Coding sequence (CDS) from alignment at ch2:902149..903288-

>KJC3_001860-T1 ID=KJC3_001860-T1|Name=KJC3_001860-T1|organism=Aspergillus niger KJC3|type=CDS|length=1512bp|location=Sequence derived from alignment at ch2:902149..903288- (Aspergillus niger KJC3)
TTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTTAGCGATTACTCCG
GCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAACAACGTCTGC
ATGACATGGTCTTGGAGGACGTGACTGAGTTAATTCGCTGGAACGCTGCT
TGGATTCGATGACTACGTTAAACTGATCGACAAGTGTGTCGGATCCAGGA
TATGGGTCATCATGAAGAATGACAAAGATGGCGTCACAACTTCTTCCTCT
TGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTTAGCGATTACTC
CGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAACAACGTCT
GCATGACATGGTCTTGGAGGACGTGACTGAGTTAATTCGCTGGAACGCTG
CTTGGATTCGATGACTACGTTAAACTGATCGACAAGTGTGTCGGATCCAG
GATATGGGTCATCATGAAGAATGACAAAGATGGCGTCACAACTTCTTCCT
CTTGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTTAGCGATTAC
TCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAACAACGT
CTGCATGACATGGTCTTGGAGGACGTGACTGAGTTAATTCGCTGGAACGC
TGCTTGGATTCGATGACTACGTTAAACTGATCGACAAGTGTGTCGGATCC
AGGATATGGGTCATCATGAAGAATGACAAAGATGGCGTCACAACTTCTTC
CTCTTGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTTAGCGATT
ACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAACAAC
GTCTGCATGACATGGTCTTGGAGGACGTGACTGAGTTAATTCGCTGGAAC
GCTGCTTGGATTCGATGACTACGTTAAACTGATCGACAAGTGTGTCGGAT
CCAGGATATGGGTCATCATGAAGAATGACAAAGATGGCGTCACAACTTCT
TCCTCTTGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTTAGCGA
TTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAACA
ACGTCTGCATGACATGGTCTTGGAGGACGTGACTGAGTTAATTCGCTGGA
ACGCTGCTTGGATTCGATGACTACGTTAAACTGATCGACAAGTGTGTCGG
ATCCAGGATATGGGTCATCATGAAGAATGACAAAGATGGCGTCACAACTT
CTTCCTCTTGTTGATCCCCGGTGGTGAGGGACCCGTCGGTAGCTCTTAGC
GATTACTCCGGCTCTCAAGTGAAGCTCCCCAAGATTCTGTTGAATGGAAA
CAACGTCTGCATGACATGGTCTTGGAGGACGTGACTGAGTTAATTCGCTG
GAACGCTGCTTGGATTCGATGACTACGTTAAACTGATCGACAAGTGTGTC
GGATCCAGGATATGGGTCATCATGAAGAATGACAAAGATGGCGTCACAAC
TTCTTCCTCTTG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM5KJC3_001860Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001860-T1KJC3_001860-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001860-T1.cdsKJC3_001860-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001860-T1.utr3p1KJC3_001860-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001860-T1.exon7KJC3_001860-T1.exon7Aspergillus niger KJC3exon
KJC3_001860-T1.exon6KJC3_001860-T1.exon6Aspergillus niger KJC3exon
KJC3_001860-T1.exon5KJC3_001860-T1.exon5Aspergillus niger KJC3exon
KJC3_001860-T1.exon4KJC3_001860-T1.exon4Aspergillus niger KJC3exon
KJC3_001860-T1.exon3KJC3_001860-T1.exon3Aspergillus niger KJC3exon
KJC3_001860-T1.exon2KJC3_001860-T1.exon2Aspergillus niger KJC3exon
KJC3_001860-T1.exon1KJC3_001860-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001860-T1.utr5p2KJC3_001860-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001860-T1.utr5p1KJC3_001860-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR033871
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductRNA-binding protein lsm5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:902149..903288 -
Powered by Drupal