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KJC3_001870-T1, KJC3_001870-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001870-T1
Unique NameKJC3_001870-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:920716..925041+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001870-T1 ID=KJC3_001870-T1|Name=KJC3_001870-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4326bp|location=Sequence derived from alignment at ch2:920716..925041+ (Aspergillus niger KJC3)
ATATAAGTTAGCGCGAAGAAATGGCCAGGGGTCCGTCCCCAGGTCATGCC
ACCCAAACGCCGACTACGAAAGAATACGGCCGCGATAGCCATACAAGAGA
GCGGATACATCGGTTCCCCATCAATGGAGGATACAAGGAATCTTGTCCCA
CTTGCCTCCGCCCCGGCAAAGCATCTCCCTCTTGACGCCCACAATGGCTC
CTGTGAAACCGGCTCGTTGACCCCAGTCCGCTTCAACTGTCAAGCCTGTG
TGCGCAAGAAGATCAAATGCAACCGCGCGGTGCCCAAGTGTGCCAACTGC
ATCAAGACCAAGCTCGAGTGTGTCTACCAGCCACCGCCGCCACGACGCAA
GAGGAAACGTAGCCAGGGCGAGGAAGATGTACATGAACGTCTGGCACGTT
ACGAGCGCATCTTGCACGACCACAATCTTCTTCCGACAGCCACCCCCTCG
GTTATCAGCGGAAGAGACTTGGAGGCCTCAGCAAATAGTATACAGGGACA
GACTCCAGGGACAGCGAACTCGCAGGCTGACGTTGCAGCCAATAAACTGC
TTCCCAAGTATGGCAATTCTCGCCACATTGACGATGTTCTGCTCCTCGAC
GCTGGCGAAGGTGACCTGGGTGAGTTGTCCGTGTCCGAGTCCGAGCAACA
GAACCATCATGAAGATGAGCCTGGTCCCGACAAAGCCACTCCAACCGGTC
TTCTTGGTGCCCTTGCCGCGCATTCCATCTCGGATGCAAGTACGAGAAGC
GCGATAAGCCTCACCGACCTTCACCCTAGCTGTGAGCATGCGGCTAAGCT
CTGGTATGCCTACGTGGAGAACGTCGAGCCTCTTTGCAAGGTTCTTCATG
TTCCGACTGTCGCCAGGATAGTCCACACCGTCTCCAAGCACCCAGCGACT
GCCTCCAAGAACGATGAATGCATACTGTTTGCCATTTACCATTTCGCCGT
ATTTTCAATGTCCGATGACGAGTGTTCACATGAACTCCATGATTCCAGGG
CCCAGCTGATGCACAAATATCGGACCGCAGTCACTCAGGCATTGGTAAAT
GCCTCTTGGCTCAAGACAACCTCGTTGCCGGTTTTACAGGCTTACACTCT
CTTCCTTATCTCCTTGCGCACTCAAATCGATTCTCATACATTCTGGATTT
TGACTGGGATTGCAATTCGCCTGGCCCAGCGCATAGGATTGCATCGGGAC
GGCGAAAGCGTCGGATTGCCCCCATTTGAGGTCCAGATGCGCCGGCGGCT
CTTTTGGCAGCTGCTACCCTTGGACAGCTACGCAGGTCAAACATCCGGCA
CGGGTATATCCATCTCACCAGACAGCTGGGATACTAAGCAACCGCTAAAC
ATTAACGATGACCAGATGTTCCCCGGCATGAACGAGCCGCCTCATGAAAA
ACGAGGCGCATCAGAGATGATATTTTGCTTGGCTCGGATGGAGCTGTCAA
ATTTCTACACTCGAACCGGGGTCCAGCTGAAGGGGAACGGGGGTACAATC
GAGTTCCGGACCCCCGAGGAGATCGAGCGACTGATTGACGAGGTGGAAGA
CCTCATCGAGAAGAAGTTCTTGCGGTACTGCGACATCTTGAACCCCTTAC
ACTTTCTGACCACCGGCGTTATGCGATCCGCCATTAGTGCTGTCCGGTTA
CGCGCGCGGATGCCGCTGCTCAAGCAAGAAACTATAACCGACACACAGCA
GAGACACCTCTGCACCCTTGCCGAAAAGGTCCTCGACACCAGAAATGTCA
TGTATAGTAATCCCGCGACTCAAAAGTTCCGCTGGCAGATGCAAGCGTTT
TTCGTGTGGGATTCCCTCCTTTGTATTCTGAGAAGCATTGCGAAGGTTGG
ATTTTATTCGCCATCAGAGCTTGATGCTGCCTGGAAAAGGGTTTCAGAGG
TCTACGCGAATCACGAAGCACTGCGTCAGGGCCGAAGGACCTTGTATGCT
ACGATTGCTAAGATCACTTTGAAGGCCTGGTTACTAAACCCGCCTCGTAA
TTCAACTCCCGAACCGGATTTTATGACCGCGCTGCGCGCTCAACACAAGC
CCAAAGAGATCGACCAGCGGCATGACAGTACGTTTGCTGCCCATCAAGCT
ACAGATGGGGCTTTTTCTTTCGATGAGCTTTTCGACGATATGAGCAGGGC
TGATCCCAATATGAACAATGCCTTCAATCTCGACCCTTCTGCCGATTGGC
TATTCTGGGACCAAATGTGTGGAGAAACCAGCCTTGGTTGAGGACAAGGA
GACTCTCACGGCTCCGTTCTCGGTCCTCGCAGACTTTGAAATAACGTGTC
TGTAACTCATGAAAGAGATATCATGATCTATGACCCCTATCATCACTTAC
CATCTCACCGTGCCGCTACCTTCCTCGCCCGACGCTTTGGCGACTAGCTG
GAAGTGCGTCACGCATATCGACTCAAGATCACCTCGAGATCAAGCAAGCA
GTCATGCGTGTGCTCGCATGAATCCGGACATCTACAAATGCATGGTTCTA
TGGGTTGGTTTTATCGGAACAAGAGTGAATAACCCAGGGGGCGGGTCAGC
AACGAACTAAATAAGTACCGATCTCGCATCCAAAAGGAGAATTTCTCTAT
GACAGCTGATTTATGATACAAATACCCATACCACCCAATGACAACCTCCG
CCTGGTGGCTTCATTCCAGGCGGACATCAATCCCACCTCGCATGCCACTC
CAGCCCATTCAACCAGAGGCATATTCAGACATGGCACGCAACCGGGGCCC
GTATTTCCAGAAAACAAACGGCCCTCCCCATCCGAAAATCATGGCCGTAA
AAGCCAACACACTGGTGCCCCAACCATACCCCAGGGCGTTATACATATAG
GGAGCAAACAGCGGGAATCCGAAGCCGCACAAACTCCTCAGCACGGCACA
GGCAGCCATAGCGCTAGCTGCGTAGGTTTGATAGCTGTCAACAATATACG
TCTGCATGCCCTGCAGGCAGGAGATGGTGCCCATGGTGTAAATCAGCGCA
CCGATATTCGGCATAATCCAATGGGTATTCCCAATGCTCCAACCATACCA
GAAGAGCCCGATAGTACTGATGATCGAGCCCACAGCCAACGACGGCATTC
GAAACTCGGGTTTGCCTATATTATTGTTCCGGGCTTTGAGAGTCCTGTAG
ATACGGTCCACGAGCTTGAGGTTAAAGAAGAGCCCGATGAACGCTCCAAT
CGCGATGGAGAGATAATTGAGGCCCCCAATCCCAGAGCTCTCGTGGTAGA
CGTCGGTCCAGATATCCGGGAAGGTCGCAAACATCATGTACGTCACGCCG
AAGAGATAGGCCATATAAAGCGCTATACAGAAGACAATGGGCTGAGTCGT
GAACATCCGCACCGGCCGCTCAAACGCATGAAGGAGCTTGAAGCCGAGTG
TCTCAACTTTCTCCGCGGTATGAAGCTCCTCATTTCCTGTTTCCTTAGCA
AGAACGTCTCGTCTCCTCCGTAAAATCGTCCCCGGATGGCACTCTCTCAA
CCAGAAAACCCCAACTACCTGCACTGCGACAGCAGCAGCAGAAGTAGCCC
AAAACACCCATCGCCAGGTCGAATACTCGGCAATGAACCCGCCCGCAATC
GGTCCAATCACAGGCCCCAGTAATGGCCCCAGAGTATACACCCCCATAGC
TTTCCCCCGTTCTTCCGCGGACCACATATCACTACCAGTTGAAGTCAGTG
GAGTGCAAATGCCGATTGAAAATATATATTCAAATCCATCTTTGAATATA
ATTCACTCACCTAATAGTCCCCCCTCCAATAGCCAGCGGCGCACTCCCCC
CAATCCCCGCCAAAAACCGAAACGCAAAAAGCTGTCCCTTCGTCCTCGCG
AACCCGCATCCCAGATTCCAGGCCAGATACCACACATTGCTGAGTTGGAG
TAAACGCACTCGACCGTATAATTCCGACGCCGGACCAAAGAAAACAGGGC
CGATGGCATACGCGAGAATAAAGATACTCAATGAAAGATATATCTCAATT
TCCGCATGCATGTCCAGCGACTGCGCGAGATCATTCATGGCCGGGGCGAT
CATTGATGACGACACGGGCGAGATGAAGACGAAAAGCGAAACCGACCACG
TATTCTGCCACTTTAGGCCTCTCGGCCAATTCTTGGGATTTCCTGGGTCA
TTAGGGCTGTTCCAGGTGACGAGGTTGGGATCTTTGGAGGCTTCGGCCTT
GATGGGAGGGTTGGGGGTGAGGGTTTTGGGGCATGCTTCGAGGTCTTGGT
CTTGGTTGGATGCCATTGGATGGATTTTACGTCTCGTTTCACTGGTCTTG
AGGTTTGGAGATAATATGTATTGAGG
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Coding sequence (CDS) from alignment at ch2:920716..925041+

>KJC3_001870-T1 ID=KJC3_001870-T1|Name=KJC3_001870-T1|organism=Aspergillus niger KJC3|type=CDS|length=4290bp|location=Sequence derived from alignment at ch2:920716..925041+ (Aspergillus niger KJC3)
ATGCCACCCAAACGCCGACTACGAAAGAATACGGCCGCGATAGCCATACA
AGAGAGCGGATACATCGGTTCCCCATCAATGGAGGATACAAGGAATCTTG
TCCCACTTGCCTCCGCCCCGGCAAAGCATCTCCCTCTTGACGCCCACAAT
GGCTCCTGTGAAACCGGCTCGTTGACCCCAGTCCGCTTCAACTGTCAAGC
CTGTGTGCGCAAGAAGATCAAATGCAACCGCGCGGTGCCCAAGTGTGCCA
ACTGCATCAAGACCAAGCTCGAGTGTGTCTACCAGCCACCGCCGCCACGA
CGCAAGAGGAAACGTAGCCAGGGCGAGGAAGATGTACATGAACGTCTGGC
ACGTTACGAGCGCATCTTGCACGACCACAATCTTCTTCCGACAGCCACCC
CCTCGGTTATCAGCGGAAGAGACTTGGAGGCCTCAGCAAATACCAATAAA
CTGCTTCCCAAGTATGGCAATTCTCGCCACATTGACGATGTTCTGCTCCT
CGACGCTGGCGAAGGTGACCTGGGTGAGTTGTCCGTGTCCGAGTCCGAGC
AACAGAACCATCATGAAGATGAGCCTGGTCCCGACAAAGCCACTCCAACC
GGTCTTCTTGGTGCCCTTGCCGCGCATTCCATCTCGGATGCAAGTACGAG
AAGCGCGATAAGCCTCACCGACCTTCACCCTAGCTGTGAGCATGCGGCTA
AGCTCTGGTATGCCTACGTGGAGAACGTCGAGCCTCTTTGCAAGGTTCTT
CATGTTCCGACTGTCGCCAGGATAGTCCACACCGTCTCCAAGCACCCAGC
GACTGCCTCCAAGAACGATGAATGCATACTGTTTGCCATTTACCATTTCG
CCGTATTTTCAATGTCCGATGACGAGTGTTCACATGAACTCCATGATTCC
AGGGCCCAGCTGATGCACAAATATCGGACCGCAGTCACTCAGGCATTGGT
AAATGCCTCTTGGCTCAAGACAACCTCGTTGCCGGTTTTACAGGCTTACA
CTCTCTTCCTTATCTCCTTGCGCACTCAAATCGATTCTCATACATTCTGG
ATTTTGACTGGGATTGCAATTCGCCTGGCCCAGCGCATAGGATTGCATCG
GGACGGCGAAAGCGTCGGATTGCCCCCATTTGAGGTCCAGATGCGCCGGC
GGCTCTTTTGGCAGCTGCTACCCTTGGACAGCTACGCAGGTCAAACATCC
GGCACGGGTATATCCATCTCACCAGACAGCTGGGATACTAAGCAACCGCT
AAACATTAACGATGACCAGATGTTCCCCGGCATGAACGAGCCGCCTCATG
AAAAACGAGGCGCATCAGAGATGATATTTTGCTTGGCTCGGATGGAGCTG
TCAAATTTCTACACTCGAACCGGGGTCCAGCTGAAGGGGAACGGGGGTAC
AATCGAGTTCCGGACCCCCGAGGAGATCGAGCGACTGATTGACGAGGTGG
AAGACCTCATCGAGAAGAAGTTCTTGCGGTACTGCGACATCTTGAACCCC
TTACACTTTCTGACCACCGGCGTTATGCGATCCGCCATTAGTGCTGTCCG
GTTACGCGCGCGGATGCCGCTGCTCAAGCAAGAAACTATAACCGACACAC
AGCAGAGACACCTCTGCACCCTTGCCGAAAAGGTCCTCGACACCAGAAAT
GTCATGTATAGTAATCCCGCGACTCAAAAGTTCCGCTGGCAGATGCAAGC
GTTTTTCGTGTGGGATTCCCTCCTTTGTATTCTGAGAAGCATTGCGAAGG
TTGGATTTTATTCGCCATCAGAGCTTGATGCTGCCTGGAAAAGGGTTTCA
GAGGTCTACGCGAATCACGAAGCACTGCGTCAGGGCCGAAGGACCTTGTA
TGCTACGATTGCTAAGATCACTTTGAAGGCCTGGTTACTAAACCCGCCTC
GTAATTCAACTCCCGAACCGGATTTTATGACCGCGCTGCGCGCTCAACAC
AAGCCCAAAGAGATCGACCAGCGGCATGACAGTACGTTTGCTGCCCATCA
AGCTACAGATGGGGCTTTTTCTTTCGATGAGCTTTTCGACGATATGAGCA
GGGCTGATCCCAATATGAACAATGCCTTCAATCTCGACCCTTCTGCCGAT
TGGCTATTCTGGGACCAAATGTGTGGAGAAACCAGCCTTGGTTGAATGCC
ACCCAAACGCCGACTACGAAAGAATACGGCCGCGATAGCCATACAAGAGA
GCGGATACATCGGTTCCCCATCAATGGAGGATACAAGGAATCTTGTCCCA
CTTGCCTCCGCCCCGGCAAAGCATCTCCCTCTTGACGCCCACAATGGCTC
CTGTGAAACCGGCTCGTTGACCCCAGTCCGCTTCAACTGTCAAGCCTGTG
TGCGCAAGAAGATCAAATGCAACCGCGCGGTGCCCAAGTGTGCCAACTGC
ATCAAGACCAAGCTCGAGTGTGTCTACCAGCCACCGCCGCCACGACGCAA
GAGGAAACGTAGCCAGGGCGAGGAAGATGTACATGAACGTCTGGCACGTT
ACGAGCGCATCTTGCACGACCACAATCTTCTTCCGACAGCCACCCCCTCG
GTTATCAGCGGAAGAGACTTGGAGGCCTCAGCAAATACCAATAAACTGCT
TCCCAAGTATGGCAATTCTCGCCACATTGACGATGTTCTGCTCCTCGACG
CTGGCGAAGGTGACCTGGGTGAGTTGTCCGTGTCCGAGTCCGAGCAACAG
AACCATCATGAAGATGAGCCTGGTCCCGACAAAGCCACTCCAACCGGTCT
TCTTGGTGCCCTTGCCGCGCATTCCATCTCGGATGCAAGTACGAGAAGCG
CGATAAGCCTCACCGACCTTCACCCTAGCTGTGAGCATGCGGCTAAGCTC
TGGTATGCCTACGTGGAGAACGTCGAGCCTCTTTGCAAGGTTCTTCATGT
TCCGACTGTCGCCAGGATAGTCCACACCGTCTCCAAGCACCCAGCGACTG
CCTCCAAGAACGATGAATGCATACTGTTTGCCATTTACCATTTCGCCGTA
TTTTCAATGTCCGATGACGAGTGTTCACATGAACTCCATGATTCCAGGGC
CCAGCTGATGCACAAATATCGGACCGCAGTCACTCAGGCATTGGTAAATG
CCTCTTGGCTCAAGACAACCTCGTTGCCGGTTTTACAGGCTTACACTCTC
TTCCTTATCTCCTTGCGCACTCAAATCGATTCTCATACATTCTGGATTTT
GACTGGGATTGCAATTCGCCTGGCCCAGCGCATAGGATTGCATCGGGACG
GCGAAAGCGTCGGATTGCCCCCATTTGAGGTCCAGATGCGCCGGCGGCTC
TTTTGGCAGCTGCTACCCTTGGACAGCTACGCAGGTCAAACATCCGGCAC
GGGTATATCCATCTCACCAGACAGCTGGGATACTAAGCAACCGCTAAACA
TTAACGATGACCAGATGTTCCCCGGCATGAACGAGCCGCCTCATGAAAAA
CGAGGCGCATCAGAGATGATATTTTGCTTGGCTCGGATGGAGCTGTCAAA
TTTCTACACTCGAACCGGGGTCCAGCTGAAGGGGAACGGGGGTACAATCG
AGTTCCGGACCCCCGAGGAGATCGAGCGACTGATTGACGAGGTGGAAGAC
CTCATCGAGAAGAAGTTCTTGCGGTACTGCGACATCTTGAACCCCTTACA
CTTTCTGACCACCGGCGTTATGCGATCCGCCATTAGTGCTGTCCGGTTAC
GCGCGCGGATGCCGCTGCTCAAGCAAGAAACTATAACCGACACACAGCAG
AGACACCTCTGCACCCTTGCCGAAAAGGTCCTCGACACCAGAAATGTCAT
GTATAGTAATCCCGCGACTCAAAAGTTCCGCTGGCAGATGCAAGCGTTTT
TCGTGTGGGATTCCCTCCTTTGTATTCTGAGAAGCATTGCGAAGGTTGGA
TTTTATTCGCCATCAGAGCTTGATGCTGCCTGGAAAAGGGTTTCAGAGGT
CTACGCGAATCACGAAGCACTGCGTCAGGGCCGAAGGACCTTGTATGCTA
CGATTGCTAAGATCACTTTGAAGGCCTGGTTACTAAACCCGCCTCGTAAT
TCAACTCCCGAACCGGATTTTATGACCGCGCTGCGCGCTCAACACAAGCC
CAAAGAGATCGACCAGCGGCATGACAGTACGTTTGCTGCCCATCAAGCTA
CAGATGGGGCTTTTTCTTTCGATGAGCTTTTCGACGATATGAGCAGGGCT
GATCCCAATATGAACAATGCCTTCAATCTCGACCCTTCTGCCGATTGGCT
ATTCTGGGACCAAATGTGTGGAGAAACCAGCCTTGGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
VRTR1KJC3_001870Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001870-T1.utr5p1KJC3_001870-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001870-T1.exon1KJC3_001870-T1.exon1Aspergillus niger KJC3exon
KJC3_001870-T1.exon2KJC3_001870-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001870-T1.cdsKJC3_001870-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001870-T1.utr3p1KJC3_001870-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001870-T1KJC3_001870-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefInterPro:IPR007219
DBxrefPFAM:PF00172
DBxrefPFAM:PF04082
ProductTranscription factor vrtR1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:920716..925041 +
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