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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:928674..930890+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001873-T1 ID=KJC3_001873-T1|Name=KJC3_001873-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2217bp|location=Sequence derived from alignment at ch2:928674..930890+ (Aspergillus niger KJC3)
GTCTGCTTCAAGCAAGGTACATTTGTTTGGTGACTCGAACTAACGGTCAG
TCGGCTTATTCCCTGAAAGGTGCGACTGCCAGTCTATTGGCTGGTGTTTC
TCCAGGGTCCATCTACTACCTAATATCCGGCTGGTGCACGTTGCCGGAAT
ATACATCTATGCCCGCTTCACCTAACCAGGATCAATACTAGTTCCACGTA
CTAAAGAGAACAAACCAACAGCGGTCGTTTCATATAACTCTAGATAGCCT
AGAATAACTATCGTTCGTTACAAATCTGCTCCTAACCATGACAGTATCCA
ATACTGCAATCATGGTGCAACAACCCTCTTCGGCTCAGACCCCGACGAGG
CGGAGATGCAGACGAGAAGGCGCCAAGTGGACACGGTCTGGCTGCTTGAC
ATGCAAGCGTCGTCGGAAGCGGTGTGATGAAGCGAAGCCCTGGTATGATG
GACTCCGTCCCTGGTACTAGGGTATACTAGGCACTAACTGCTTGATTACA
ATAGCTGTCATAGCTGCGCCAGGTTGGGCTTAAAATGTGAGGGCTATGGC
TCAATGTGGGCAGAGCCTTTAGATCCATCGGCAAATGTCTTCAGTCAGTT
CAGAGCATCAAAACGGCGCAGAGTTAGCACAGCATCTTCTTCAACGAGTT
TCTCGCGTGGCCCGGAAGAAGAGCTCTGGCTGTGCCCGAGCTCCCCAGTA
TCGAGCAGTCTATCAACAGCGCCAACAACTCCGGCTGATTCTGACAACAA
CAGTCTATACTCCTGGAATAATGAAGACAATAAATATGGAGACGTGCAGG
TTACAATACCTGACATTGACGCCTGCGGTACACTCACCGTTGCTCCACCC
ATACCAAGTAGGTACTTCAGTCATCTGTCGCATCACGATACGCACTATCT
CCAGTATCACACCGAGCTGGGCTCCAAGCTACTAGCCAACCTTGAGAGTA
TTGACAACCCTCTTCGATCGTTTCTTATACCTCGAGCCCTATCATCGCCT
CTCCTGATGAAGGCCCTGTGTGCGGTATCTGCAACGCATTTTGCAAATCG
GTCCCGGGACAAACAGGAGGCCCAAACAGCCGCGACAGACTACTACGTTC
GAACACTGAGTGGGCTGCAGTTGACAATTGCTAAACATTCACCGCGGAGT
CTTCCCGATGAGGCTATTCTAGCAGTGGCCATGCTTTGCAAGTACGAGAT
CGTACGCGGAAGTGTTCAGCAGTGGACCGTGCATCTGAACGCCCTGCAAG
AGCTCATAATGGCTCGGGGTGGAGTTGATGCTCTAAACGATGACATGAGA
GAATTCTTAAGCGGCTTGTAAGACCTTCTCTACAACCAAGCCGCCTTGAA
CGAGAGCTAACCCCACCATAGCTACGTCTACGCCTATAACATGGCTAGAA
TTAACAACCGCAAACACATCAACTATGACCTTAACATTGGCAATGTCAAA
ATCTCCAAGCTCGACATCTACATCGGCTACGCAGAAGACCTCATCAAGAT
CTGTGCCCGAATAGCCGACCTCCCCACACTGTCCGAAGACCCTGTAGCTT
TGGACCTAGAAGTCCACTCGATGTAAGTAAACCCTCGACAACATACACAA
CCAAAGCTAACCAACAACCACACGCAGAGACACATCCCTCCGAGACTGGG
CCCCCACCAACACCACATACATCATCCCACGAGGCATAACTGAATCAAAC
CTCGTCCGTCTCCGCATGGTAGCCAACTGCTTCCGCGACGCCGCATACCT
CTATCTTCATTCCACCCTGGAGAGACTGAACCAGGGAATGGCGTCACCGC
CATCATTACCACTTGCTACTCCGTTACCATTGGCACTACAAGCGTCATCC
AAATTAGTACCAGCGCCATCACCATCCATCTCCCTCCCCCGATCAACTGC
ACTACACCAACTTCTAAGCAGAATCAGGGCTTTCCCACTCGACGAACACT
GTGAATACTCTGCCCTTACATTCCCACTCTTCATCGCCGGCTGCGAGAGC
AGGGATCTTGCAGACCAGGAGCTCATTATACAGTCATTGAGTAAGTTAGA
GGCGAACTTTGGTATCGGGAATGTAAGAAGAGCAAAGGAGATGTTGAGTA
TCCTGTGGGCTGGAGAAGGAGATGTGCATTGGTTGGACATGTTGGAGCGG
TTACAGTGGGATTTGATTCTGGCTTAGATACTATAGATACTATATGTAGA
CAATTAATGAATTTGAT back to topCoding sequence (CDS) from alignment at ch2:928674..930890+ >KJC3_001873-T1 ID=KJC3_001873-T1|Name=KJC3_001873-T1|organism=Aspergillus niger KJC3|type=CDS|length=6876bp|location=Sequence derived from alignment at ch2:928674..930890+ (Aspergillus niger KJC3)
ATGACAGTATCCAATACTGCAATCATGGTGCAACAACCCTCTTCGGCTCA
GACCCCGACGAGGCGGAGATGCAGACGAGAAGGCGCCAAGTGGACACGGT
CTGGCTGCTTGACATGCAAGCGTCGTCGGAAGCGGTGTGATGAAGCGAAG
CCCTGCTGTCATAGCTGCGCCAGGTTGGGCTTAAAATGTGAGGGCTATGG
CTCAATGTGGGCAGAGCCTTTAGATCCATCGGCAAATGTCTTCAGTCAGT
TCAGAGCATCAAAACGGCGCAGAGTTAGCACAGCATCTTCTTCAACGAGT
TTCTCGCGTGGCCCGGAAGAAGAGCTCTGGCTGTGCCCGAGCTCCCCAGT
ATCGAGCAGTCTATCAACAGCGCCAACAACTCCGGCTGATTCTGACAACA
ACAGTCTATACTCCTGGAATAATGAAGACAATAAATATGGAGACGTGCAG
GTTACAATACCTGACATTGACGCCTGCGGTACACTCACCGTTGCTCCACC
CATACCAAGTAGGTACTTCAGTCATCTGTCGCATCACGATACGCACTATC
TCCAGTATCACACCGAGCTGGGCTCCAAGCTACTAGCCAACCTTGAGAGT
ATTGACAACCCTCTTCGATCGTTTCTTATACCTCGAGCCCTATCATCGCC
TCTCCTGATGAAGGCCCTGTGTGCGGTATCTGCAACGCATTTTGCAAATC
GGTCCCGGGACAAACAGGAGGCCCAAACAGCCGCGACAGACTACTACGTT
CGAACACTGAGTGGGCTGCAGTTGACAATTGCTAAACATTCACCGCGGAG
TCTTCCCGATGAGGCTATTCTAGCAGTGGCCATGCTTTGCAAGTACGAGA
TCGTACGCGGAAGTGTTCAGCAGTGGACCGTGCATCTGAACGCCCTGCAA
GAGCTCATAATGGCTCGGGGTGGAGTTGATGCTCTAAACGATGACATGAG
AGAATTCTTAAGCGGCTTCTACGTCTACGCCTATAACATGGCTAGAATTA
ACAACCGCAAACACATCAACTATGACCTTAACATTGGCAATGTCAAAATC
TCCAAGCTCGACATCTACATCGGCTACGCAGAAGACCTCATCAAGATCTG
TGCCCGAATAGCCGACCTCCCCACACTGTCCGAAGACCCTGTAGCTTTGG
ACCTAGAAGTCCACTCGATAGACACATCCCTCCGAGACTGGGCCCCCACC
AACACCACATACATCATCCCACGAGGCATAACTGAATCAAACCTCGTCCG
TCTCCGCATGGTAGCCAACTGCTTCCGCGACGCCGCATACCTCTATCTTC
ATTCCACCCTGGAGAGACTGAACCAGGGAATGGCGTCACCGCCATCATTA
CCACTTGCTACTCCGTTACCATTGGCACTACAAGCGTCATCCAAATTAGT
ACCAGCGCCATCACCATCCATCTCCCTCCCCCGATCAACTGCACTACACC
AACTTCTAAGCAGAATCAGGGCTTTCCCACTCGACGAACACTGTGAATAC
TCTGCCCTTACATTCCCACTCTTCATCGCCGGCTGCGAGAGCAGGGATCT
TGCAGACCAGGAGCTCATTATACAGTCATTGAGTAAGTTAGAGGCGAACT
TTGGTATCGGGAATGTAAGAAGAGCAAAGGAGATGTTGAGTATCCTGTGG
GCTGGAGAAGGAGATGTGCATTGGTTGGACATGTTGGAGCGGTTACAGTG
GGATTTGATTCTGGCTTAGATGACAGTATCCAATACTGCAATCATGGTGC
AACAACCCTCTTCGGCTCAGACCCCGACGAGGCGGAGATGCAGACGAGAA
GGCGCCAAGTGGACACGGTCTGGCTGCTTGACATGCAAGCGTCGTCGGAA
GCGGTGTGATGAAGCGAAGCCCTGCTGTCATAGCTGCGCCAGGTTGGGCT
TAAAATGTGAGGGCTATGGCTCAATGTGGGCAGAGCCTTTAGATCCATCG
GCAAATGTCTTCAGTCAGTTCAGAGCATCAAAACGGCGCAGAGTTAGCAC
AGCATCTTCTTCAACGAGTTTCTCGCGTGGCCCGGAAGAAGAGCTCTGGC
TGTGCCCGAGCTCCCCAGTATCGAGCAGTCTATCAACAGCGCCAACAACT
CCGGCTGATTCTGACAACAACAGTCTATACTCCTGGAATAATGAAGACAA
TAAATATGGAGACGTGCAGGTTACAATACCTGACATTGACGCCTGCGGTA
CACTCACCGTTGCTCCACCCATACCAAGTAGGTACTTCAGTCATCTGTCG
CATCACGATACGCACTATCTCCAGTATCACACCGAGCTGGGCTCCAAGCT
ACTAGCCAACCTTGAGAGTATTGACAACCCTCTTCGATCGTTTCTTATAC
CTCGAGCCCTATCATCGCCTCTCCTGATGAAGGCCCTGTGTGCGGTATCT
GCAACGCATTTTGCAAATCGGTCCCGGGACAAACAGGAGGCCCAAACAGC
CGCGACAGACTACTACGTTCGAACACTGAGTGGGCTGCAGTTGACAATTG
CTAAACATTCACCGCGGAGTCTTCCCGATGAGGCTATTCTAGCAGTGGCC
ATGCTTTGCAAGTACGAGATCGTACGCGGAAGTGTTCAGCAGTGGACCGT
GCATCTGAACGCCCTGCAAGAGCTCATAATGGCTCGGGGTGGAGTTGATG
CTCTAAACGATGACATGAGAGAATTCTTAAGCGGCTTCTACGTCTACGCC
TATAACATGGCTAGAATTAACAACCGCAAACACATCAACTATGACCTTAA
CATTGGCAATGTCAAAATCTCCAAGCTCGACATCTACATCGGCTACGCAG
AAGACCTCATCAAGATCTGTGCCCGAATAGCCGACCTCCCCACACTGTCC
GAAGACCCTGTAGCTTTGGACCTAGAAGTCCACTCGATAGACACATCCCT
CCGAGACTGGGCCCCCACCAACACCACATACATCATCCCACGAGGCATAA
CTGAATCAAACCTCGTCCGTCTCCGCATGGTAGCCAACTGCTTCCGCGAC
GCCGCATACCTCTATCTTCATTCCACCCTGGAGAGACTGAACCAGGGAAT
GGCGTCACCGCCATCATTACCACTTGCTACTCCGTTACCATTGGCACTAC
AAGCGTCATCCAAATTAGTACCAGCGCCATCACCATCCATCTCCCTCCCC
CGATCAACTGCACTACACCAACTTCTAAGCAGAATCAGGGCTTTCCCACT
CGACGAACACTGTGAATACTCTGCCCTTACATTCCCACTCTTCATCGCCG
GCTGCGAGAGCAGGGATCTTGCAGACCAGGAGCTCATTATACAGTCATTG
AGTAAGTTAGAGGCGAACTTTGGTATCGGGAATGTAAGAAGAGCAAAGGA
GATGTTGAGTATCCTGTGGGCTGGAGAAGGAGATGTGCATTGGTTGGACA
TGTTGGAGCGGTTACAGTGGGATTTGATTCTGGCTTAGATGACAGTATCC
AATACTGCAATCATGGTGCAACAACCCTCTTCGGCTCAGACCCCGACGAG
GCGGAGATGCAGACGAGAAGGCGCCAAGTGGACACGGTCTGGCTGCTTGA
CATGCAAGCGTCGTCGGAAGCGGTGTGATGAAGCGAAGCCCTGCTGTCAT
AGCTGCGCCAGGTTGGGCTTAAAATGTGAGGGCTATGGCTCAATGTGGGC
AGAGCCTTTAGATCCATCGGCAAATGTCTTCAGTCAGTTCAGAGCATCAA
AACGGCGCAGAGTTAGCACAGCATCTTCTTCAACGAGTTTCTCGCGTGGC
CCGGAAGAAGAGCTCTGGCTGTGCCCGAGCTCCCCAGTATCGAGCAGTCT
ATCAACAGCGCCAACAACTCCGGCTGATTCTGACAACAACAGTCTATACT
CCTGGAATAATGAAGACAATAAATATGGAGACGTGCAGGTTACAATACCT
GACATTGACGCCTGCGGTACACTCACCGTTGCTCCACCCATACCAAGTAG
GTACTTCAGTCATCTGTCGCATCACGATACGCACTATCTCCAGTATCACA
CCGAGCTGGGCTCCAAGCTACTAGCCAACCTTGAGAGTATTGACAACCCT
CTTCGATCGTTTCTTATACCTCGAGCCCTATCATCGCCTCTCCTGATGAA
GGCCCTGTGTGCGGTATCTGCAACGCATTTTGCAAATCGGTCCCGGGACA
AACAGGAGGCCCAAACAGCCGCGACAGACTACTACGTTCGAACACTGAGT
GGGCTGCAGTTGACAATTGCTAAACATTCACCGCGGAGTCTTCCCGATGA
GGCTATTCTAGCAGTGGCCATGCTTTGCAAGTACGAGATCGTACGCGGAA
GTGTTCAGCAGTGGACCGTGCATCTGAACGCCCTGCAAGAGCTCATAATG
GCTCGGGGTGGAGTTGATGCTCTAAACGATGACATGAGAGAATTCTTAAG
CGGCTTCTACGTCTACGCCTATAACATGGCTAGAATTAACAACCGCAAAC
ACATCAACTATGACCTTAACATTGGCAATGTCAAAATCTCCAAGCTCGAC
ATCTACATCGGCTACGCAGAAGACCTCATCAAGATCTGTGCCCGAATAGC
CGACCTCCCCACACTGTCCGAAGACCCTGTAGCTTTGGACCTAGAAGTCC
ACTCGATAGACACATCCCTCCGAGACTGGGCCCCCACCAACACCACATAC
ATCATCCCACGAGGCATAACTGAATCAAACCTCGTCCGTCTCCGCATGGT
AGCCAACTGCTTCCGCGACGCCGCATACCTCTATCTTCATTCCACCCTGG
AGAGACTGAACCAGGGAATGGCGTCACCGCCATCATTACCACTTGCTACT
CCGTTACCATTGGCACTACAAGCGTCATCCAAATTAGTACCAGCGCCATC
ACCATCCATCTCCCTCCCCCGATCAACTGCACTACACCAACTTCTAAGCA
GAATCAGGGCTTTCCCACTCGACGAACACTGTGAATACTCTGCCCTTACA
TTCCCACTCTTCATCGCCGGCTGCGAGAGCAGGGATCTTGCAGACCAGGA
GCTCATTATACAGTCATTGAGTAAGTTAGAGGCGAACTTTGGTATCGGGA
ATGTAAGAAGAGCAAAGGAGATGTTGAGTATCCTGTGGGCTGGAGAAGGA
GATGTGCATTGGTTGGACATGTTGGAGCGGTTACAGTGGGATTTGATTCT
GGCTTAGATGACAGTATCCAATACTGCAATCATGGTGCAACAACCCTCTT
CGGCTCAGACCCCGACGAGGCGGAGATGCAGACGAGAAGGCGCCAAGTGG
ACACGGTCTGGCTGCTTGACATGCAAGCGTCGTCGGAAGCGGTGTGATGA
AGCGAAGCCCTGCTGTCATAGCTGCGCCAGGTTGGGCTTAAAATGTGAGG
GCTATGGCTCAATGTGGGCAGAGCCTTTAGATCCATCGGCAAATGTCTTC
AGTCAGTTCAGAGCATCAAAACGGCGCAGAGTTAGCACAGCATCTTCTTC
AACGAGTTTCTCGCGTGGCCCGGAAGAAGAGCTCTGGCTGTGCCCGAGCT
CCCCAGTATCGAGCAGTCTATCAACAGCGCCAACAACTCCGGCTGATTCT
GACAACAACAGTCTATACTCCTGGAATAATGAAGACAATAAATATGGAGA
CGTGCAGGTTACAATACCTGACATTGACGCCTGCGGTACACTCACCGTTG
CTCCACCCATACCAAGTAGGTACTTCAGTCATCTGTCGCATCACGATACG
CACTATCTCCAGTATCACACCGAGCTGGGCTCCAAGCTACTAGCCAACCT
TGAGAGTATTGACAACCCTCTTCGATCGTTTCTTATACCTCGAGCCCTAT
CATCGCCTCTCCTGATGAAGGCCCTGTGTGCGGTATCTGCAACGCATTTT
GCAAATCGGTCCCGGGACAAACAGGAGGCCCAAACAGCCGCGACAGACTA
CTACGTTCGAACACTGAGTGGGCTGCAGTTGACAATTGCTAAACATTCAC
CGCGGAGTCTTCCCGATGAGGCTATTCTAGCAGTGGCCATGCTTTGCAAG
TACGAGATCGTACGCGGAAGTGTTCAGCAGTGGACCGTGCATCTGAACGC
CCTGCAAGAGCTCATAATGGCTCGGGGTGGAGTTGATGCTCTAAACGATG
ACATGAGAGAATTCTTAAGCGGCTTCTACGTCTACGCCTATAACATGGCT
AGAATTAACAACCGCAAACACATCAACTATGACCTTAACATTGGCAATGT
CAAAATCTCCAAGCTCGACATCTACATCGGCTACGCAGAAGACCTCATCA
AGATCTGTGCCCGAATAGCCGACCTCCCCACACTGTCCGAAGACCCTGTA
GCTTTGGACCTAGAAGTCCACTCGATAGACACATCCCTCCGAGACTGGGC
CCCCACCAACACCACATACATCATCCCACGAGGCATAACTGAATCAAACC
TCGTCCGTCTCCGCATGGTAGCCAACTGCTTCCGCGACGCCGCATACCTC
TATCTTCATTCCACCCTGGAGAGACTGAACCAGGGAATGGCGTCACCGCC
ATCATTACCACTTGCTACTCCGTTACCATTGGCACTACAAGCGTCATCCA
AATTAGTACCAGCGCCATCACCATCCATCTCCCTCCCCCGATCAACTGCA
CTACACCAACTTCTAAGCAGAATCAGGGCTTTCCCACTCGACGAACACTG
TGAATACTCTGCCCTTACATTCCCACTCTTCATCGCCGGCTGCGAGAGCA
GGGATCTTGCAGACCAGGAGCTCATTATACAGTCATTGAGTAAGTTAGAG
GCGAACTTTGGTATCGGGAATGTAAGAAGAGCAAAGGAGATGTTGAGTAT
CCTGTGGGCTGGAGAAGGAGATGTGCATTGGTTGGACATGTTGGAGCGGT
TACAGTGGGATTTGATTCTGGCTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001873-T1.utr5p1 | KJC3_001873-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001873-T1.utr3p1 | KJC3_001873-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:928674..930890 + |
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