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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:930897..933477- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001874-T1 ID=KJC3_001874-T1|Name=KJC3_001874-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2581bp|location=Sequence derived from alignment at ch2:930897..933477- (Aspergillus niger KJC3)
CGAAAAGCTTCAATTCTCAGCTGCACCCGCGGATCTCTGGCTATTCCCCC
CTTCCATCCCCGCAGATGATCGGCCTCCAGAGACCTTGTCTCTAACTTTT
GGTCCCCCATCTTTCGTTGGGCCCGACCAGCATTTATTGTGTGTCTCTCG
CCCTTTTCCTTCTCCTCTCTCTTCTCCGCGTCTCACCGCCCGCAATGACC
TTGGATGCATATGACGTCTCTGTTGTTGGATGGCAGCTCTCGGTAGGTGA
TACAAACAAATGCACTTTCTGACTCTGACAACTCTCCACTTCTTACATCC
TTCGAATACCTGGTCCACGTGGACGAGCCACTCTCATCCCACTACCGCCC
CGAATACTAATGTCGCGACAGAAGATATTCCGTGGATAGATTCCATGGCC
CCATCATCATCCACGCAGGACCATGCTGACTCTCAGCCTCCGACGGTCGC
TGCTTTCTCCCCCACCACCATCTCAGGCTCGTCCGTGACATCGAGACAGC
GCTCCAGCATCATCGTGCATCGCAAATCGCCGCTACTGGTGGCCACGCCC
CCTCAGATCACCCGGGCATTGGCCTACTCGCATCCGTTTATTCTCCCCTT
GAACAAGCTCGTTGGATTGCTCACATGGACGACCGGAGACGGTTGGCAGA
GCTTCCTGCTGGTAGCGGGATTCTGGACGCTGGTTCTCTATGGCGACGTG
ATCGTTACTTGGACCGGGCCACTCCTTGTGGTCATTAGCCTTATTCTGGG
CATGTACTGGAGACGCTACTCCCCGCTGTCATCGAGGGCTCACTTGAGTG
AGAAGCAAGGCCATCAGAGGGCTGCTTCGGAGACATTTCCCCATCGGCAT
GAAACGTTGGACGAAATAGTCGAGACGCTACGGACATTTACCACACGTTG
CAATATTCTCCTGGAGCCACTCGTTGAATTTACCGACTTCTTATCCACGC
AGAGGACGGCGACTTCTGCCACTACCCGACCAGCTCTGACGACATTATTC
TTTCGAATCCTCTTCGTGACTCCAATTTGGATCGCCTTGACTCTTCCGCC
GTTGTATCTGATCACCACTCGCCGAGTCATCATGACACTTGGCACCATCA
TTCTCACCTATCACTCTCGCCCGGCAAGAGTATCTCGTGTCATTCTTTGG
CGATCGTTAACAATCCGCCGGGTGTGCTCTATAATTACGGGGCTATCCTT
CTCTTCTACTGTTGATAAGGCGCAGTCGCTGTTAATGCAGAGCCAGGGCC
ATGCAATGAGCATTGCGACAAGACGTCGAGGAGACTCCTCCGGTGTACGA
TTTACCTTTGTCATCTATGAAAACCAACGTCGTTGGCTTGGGATCGGCTG
GACGTACTCTCTGTTCCCTTCCGAGCGAGCTGCTTGGACAGACGAGCATT
TAAATCACGTCCCGTCGAAGGAGGAATTCGAGTTACCCGGTGTCGCAAAC
GGCAATGCTCAGTGGCGCTGGGTCGAAGGGAGTGACTGGCGTATTGAAGG
GGCCGACGAGTCAGGAAAGTCGGATGCCAAAGCCGATGGCGGAGGCTGGG
TCTACTATGACAATAAGGTGGGACACATTGTTTCCCATTTTCTGACAAAT
GTCCAGGTGCCAGGGTTACTAACAGCATGGGAACAGTGGAATGACGGTCG
TCGTGGCCAGGATGGTTGGGATCGATACACCCGTCGTCGGAAGTGGTGTC
GTGACGCCGAACTAGTTGAGATTCCATCAGCGGGCGAGAGCACCTCAGTG
GAGACTAAATCGGGGATCGCTCAATCATTGGAGCAGGAAAAGGCAGCTAA
CGCCCACGAAAAAGAAATCTCATCTACGGTCGACGCCGACGCAGAAAGTC
TCGCCCCGTCAACCTCATCCAAGTCCCGCAAACGACGTTGGTTTGGGAGT
ACGAAGAGTGTAAGCGACAAAGCCAGCAGCATCTCCTCTGCTCCACCAAC
GTCCACGAATAACTCCTCCGTAGATCTCGGAAAATTAAAGTCCGCCACCC
CTACCGGCAGCTACACGCCAACTGGGAAGTCCACCGCAACTGCAACCCGA
CCCATCAGTATTCCGCACGCCCGGAAGATGTCCAATCACTCGGGAGGCAG
CGCCAGTCACAGCAGCAGCTTCGGTCGTGAGGGAAGTATCAGGGAGAAAG
AGATGTCTCTTGCTCAGGATCGTCTGGACCGCTGGGGCACTCGCGCCACG
GGGGGTACTGAACGAGCCGAGCGAGAGATGGGGCTAGGTGATGAGGTCAA
TATGGGATTGAGCTGAGCTACTGAGTCATGGAGCAGGAGGTGAAGCACAC
TGCGACTGGTGGCATCTCAAGAGAATGGCATTTTTTTTATTCAGAGCGGA
CTTGTTATTAATGATTTCGGGCTTTTATTTTGCGTCAGGCGGACGGGTGT
TTTGGGTACTTCCTTTCTTAGCTTATATTCTTATTCTGTGCAGTTTAACG
CCTTGACGAAACGGAGATACCCTTGTTTACCCAAGAGAAGATCGAACTTG
AAGGCTAAATGCTCGGAATAGTGTGCGGTAGTTGACGATTTCTAAGACTG
GTAACAGTAGTACCCGAAGTGTATTTCGGTG back to topCoding sequence (CDS) from alignment at ch2:930897..933477- >KJC3_001874-T1 ID=KJC3_001874-T1|Name=KJC3_001874-T1|organism=Aspergillus niger KJC3|type=CDS|length=5988bp|location=Sequence derived from alignment at ch2:930897..933477- (Aspergillus niger KJC3)
ATCTCGGAAAATTAATGGAATGACGGTCGTCGTGGCCAGGATGGTTGGGA
TCGATACACCCGTCGTCGGAAGTGGTGTCGTGACGCCGAACTAGTTGAGA
TTCCATCAGCGGGCGAGAGCACCTCAGTGGAGACTAAATCGGGGATCGCT
CAATCATTGGAGCAGGAAAAGGCAGCTAACGCCCACGAAAAAGAAATCTC
ATCTACGGTCGACGCCGACGCAGAAAGTCTCGCCCCGTCAACCTCATCCA
AGTCCCGCAAACGACGTTGGTTTGGGAGTACGAAGAGTAAGATATTCCGT
GGATAGATTCCATGGCCCCATCATCATCCACGCAGGACCATGCTGACTCT
CAGCCTCCGACGGTCGCTGCTTTCTCCCCCACCACCATCTCAGGCTCGTC
CGTGACATCGAGACAGCGCTCCAGCATCATCGTGCATCGCAAATCGCCGC
TACTGGTGGCCACGCCCCCTCAGATCACCCGGGCATTGGCCTACTCGCAT
CCGTTTATTCTCCCCTTGAACAAGCTCGTTGGATTGCTCACATGGACGAC
CGGAGACGGTTGGCAGAGCTTCCTGCTGGTAGCGGGATTCTGGACGCTGG
TTCTCTATGGCGACGTGATCGTTACTTGGACCGGGCCACTCCTTGTGGTC
ATTAGCCTTATTCTGGGCATGTACTGGAGACGCTACTCCCCGCTGTCATC
GAGGGCTCACTTGAGTGAGAAGCAAGGCCATCAGAGGGCTGCTTCGGAGA
CATTTCCCCATCGGCATGAAACGTTGGACGAAATAGTCGAGACGCTACGG
ACATTTACCACACGTTGCAATATTCTCCTGGAGCCACTCGTTGAATTTAC
CGACTTCTTATCCACGCAGAGGACGGCGACTTCTGCCACTACCCGACCAG
CTCTGACGACATTATTCTTTCGAATCCTCTTCGTGACTCCAATTTGGATC
GCCTTGACTCTTCCGCCGTTGTATCTGATCACCACTCGCCGAGTCATCAT
GACACTTGGCACCATCATTCTCACCTATCACTCTCGCCCGGCAAGAGTAT
CTCGTGTCATTCTTTGGCGATCGTTAACAATCCGCCGGGTGTGCTCTATA
ATTACGGGGCTATCCTTCTCTTCTACTGTTGATAAGGCGCAGTCGCTGTT
AATGCAGAGCCAGGGCCATGCAATGAGCATTGCGACAAGACGTCGAGGAG
ACTCCTCCGGTGTACGATTTACCTTTGTCATCTATGAAAACCAACGTCGT
TGGCTTGGGATCGGCTGGACGTACTCTCTGTTCCCTTCCGAGCGAGCTGC
TTGGACAGACGAGCATTTAAATCACGTCCCGTCGAAGGAGGAATTCGAGT
TACCCGGTGTCGCAAACGGCAATGCTCAGTGGCGCTGGGTCGAAGGGAGT
GACTGGCGTATTGAAGGGGCCGACGAGTCAGGAAAGTCGGATGCCAAAGC
CGATGGCGGAGGCTGGGTCTACTATGACAATAAGATGGCAGCTCTCGATC
TCGGAAAATTAATGGAATGACGGTCGTCGTGGCCAGGATGGTTGGGATCG
ATACACCCGTCGTCGGAAGTGGTGTCGTGACGCCGAACTAGTTGAGATTC
CATCAGCGGGCGAGAGCACCTCAGTGGAGACTAAATCGGGGATCGCTCAA
TCATTGGAGCAGGAAAAGGCAGCTAACGCCCACGAAAAAGAAATCTCATC
TACGGTCGACGCCGACGCAGAAAGTCTCGCCCCGTCAACCTCATCCAAGT
CCCGCAAACGACGTTGGTTTGGGAGTACGAAGAGTAAGATATTCCGTGGA
TAGATTCCATGGCCCCATCATCATCCACGCAGGACCATGCTGACTCTCAG
CCTCCGACGGTCGCTGCTTTCTCCCCCACCACCATCTCAGGCTCGTCCGT
GACATCGAGACAGCGCTCCAGCATCATCGTGCATCGCAAATCGCCGCTAC
TGGTGGCCACGCCCCCTCAGATCACCCGGGCATTGGCCTACTCGCATCCG
TTTATTCTCCCCTTGAACAAGCTCGTTGGATTGCTCACATGGACGACCGG
AGACGGTTGGCAGAGCTTCCTGCTGGTAGCGGGATTCTGGACGCTGGTTC
TCTATGGCGACGTGATCGTTACTTGGACCGGGCCACTCCTTGTGGTCATT
AGCCTTATTCTGGGCATGTACTGGAGACGCTACTCCCCGCTGTCATCGAG
GGCTCACTTGAGTGAGAAGCAAGGCCATCAGAGGGCTGCTTCGGAGACAT
TTCCCCATCGGCATGAAACGTTGGACGAAATAGTCGAGACGCTACGGACA
TTTACCACACGTTGCAATATTCTCCTGGAGCCACTCGTTGAATTTACCGA
CTTCTTATCCACGCAGAGGACGGCGACTTCTGCCACTACCCGACCAGCTC
TGACGACATTATTCTTTCGAATCCTCTTCGTGACTCCAATTTGGATCGCC
TTGACTCTTCCGCCGTTGTATCTGATCACCACTCGCCGAGTCATCATGAC
ACTTGGCACCATCATTCTCACCTATCACTCTCGCCCGGCAAGAGTATCTC
GTGTCATTCTTTGGCGATCGTTAACAATCCGCCGGGTGTGCTCTATAATT
ACGGGGCTATCCTTCTCTTCTACTGTTGATAAGGCGCAGTCGCTGTTAAT
GCAGAGCCAGGGCCATGCAATGAGCATTGCGACAAGACGTCGAGGAGACT
CCTCCGGTGTACGATTTACCTTTGTCATCTATGAAAACCAACGTCGTTGG
CTTGGGATCGGCTGGACGTACTCTCTGTTCCCTTCCGAGCGAGCTGCTTG
GACAGACGAGCATTTAAATCACGTCCCGTCGAAGGAGGAATTCGAGTTAC
CCGGTGTCGCAAACGGCAATGCTCAGTGGCGCTGGGTCGAAGGGAGTGAC
TGGCGTATTGAAGGGGCCGACGAGTCAGGAAAGTCGGATGCCAAAGCCGA
TGGCGGAGGCTGGGTCTACTATGACAATAAGATGGCAGCTCTCGATCTCG
GAAAATTAATGGAATGACGGTCGTCGTGGCCAGGATGGTTGGGATCGATA
CACCCGTCGTCGGAAGTGGTGTCGTGACGCCGAACTAGTTGAGATTCCAT
CAGCGGGCGAGAGCACCTCAGTGGAGACTAAATCGGGGATCGCTCAATCA
TTGGAGCAGGAAAAGGCAGCTAACGCCCACGAAAAAGAAATCTCATCTAC
GGTCGACGCCGACGCAGAAAGTCTCGCCCCGTCAACCTCATCCAAGTCCC
GCAAACGACGTTGGTTTGGGAGTACGAAGAGTAAGATATTCCGTGGATAG
ATTCCATGGCCCCATCATCATCCACGCAGGACCATGCTGACTCTCAGCCT
CCGACGGTCGCTGCTTTCTCCCCCACCACCATCTCAGGCTCGTCCGTGAC
ATCGAGACAGCGCTCCAGCATCATCGTGCATCGCAAATCGCCGCTACTGG
TGGCCACGCCCCCTCAGATCACCCGGGCATTGGCCTACTCGCATCCGTTT
ATTCTCCCCTTGAACAAGCTCGTTGGATTGCTCACATGGACGACCGGAGA
CGGTTGGCAGAGCTTCCTGCTGGTAGCGGGATTCTGGACGCTGGTTCTCT
ATGGCGACGTGATCGTTACTTGGACCGGGCCACTCCTTGTGGTCATTAGC
CTTATTCTGGGCATGTACTGGAGACGCTACTCCCCGCTGTCATCGAGGGC
TCACTTGAGTGAGAAGCAAGGCCATCAGAGGGCTGCTTCGGAGACATTTC
CCCATCGGCATGAAACGTTGGACGAAATAGTCGAGACGCTACGGACATTT
ACCACACGTTGCAATATTCTCCTGGAGCCACTCGTTGAATTTACCGACTT
CTTATCCACGCAGAGGACGGCGACTTCTGCCACTACCCGACCAGCTCTGA
CGACATTATTCTTTCGAATCCTCTTCGTGACTCCAATTTGGATCGCCTTG
ACTCTTCCGCCGTTGTATCTGATCACCACTCGCCGAGTCATCATGACACT
TGGCACCATCATTCTCACCTATCACTCTCGCCCGGCAAGAGTATCTCGTG
TCATTCTTTGGCGATCGTTAACAATCCGCCGGGTGTGCTCTATAATTACG
GGGCTATCCTTCTCTTCTACTGTTGATAAGGCGCAGTCGCTGTTAATGCA
GAGCCAGGGCCATGCAATGAGCATTGCGACAAGACGTCGAGGAGACTCCT
CCGGTGTACGATTTACCTTTGTCATCTATGAAAACCAACGTCGTTGGCTT
GGGATCGGCTGGACGTACTCTCTGTTCCCTTCCGAGCGAGCTGCTTGGAC
AGACGAGCATTTAAATCACGTCCCGTCGAAGGAGGAATTCGAGTTACCCG
GTGTCGCAAACGGCAATGCTCAGTGGCGCTGGGTCGAAGGGAGTGACTGG
CGTATTGAAGGGGCCGACGAGTCAGGAAAGTCGGATGCCAAAGCCGATGG
CGGAGGCTGGGTCTACTATGACAATAAGATGGCAGCTCTCGATCTCGGAA
AATTAATGGAATGACGGTCGTCGTGGCCAGGATGGTTGGGATCGATACAC
CCGTCGTCGGAAGTGGTGTCGTGACGCCGAACTAGTTGAGATTCCATCAG
CGGGCGAGAGCACCTCAGTGGAGACTAAATCGGGGATCGCTCAATCATTG
GAGCAGGAAAAGGCAGCTAACGCCCACGAAAAAGAAATCTCATCTACGGT
CGACGCCGACGCAGAAAGTCTCGCCCCGTCAACCTCATCCAAGTCCCGCA
AACGACGTTGGTTTGGGAGTACGAAGAGTAAGATATTCCGTGGATAGATT
CCATGGCCCCATCATCATCCACGCAGGACCATGCTGACTCTCAGCCTCCG
ACGGTCGCTGCTTTCTCCCCCACCACCATCTCAGGCTCGTCCGTGACATC
GAGACAGCGCTCCAGCATCATCGTGCATCGCAAATCGCCGCTACTGGTGG
CCACGCCCCCTCAGATCACCCGGGCATTGGCCTACTCGCATCCGTTTATT
CTCCCCTTGAACAAGCTCGTTGGATTGCTCACATGGACGACCGGAGACGG
TTGGCAGAGCTTCCTGCTGGTAGCGGGATTCTGGACGCTGGTTCTCTATG
GCGACGTGATCGTTACTTGGACCGGGCCACTCCTTGTGGTCATTAGCCTT
ATTCTGGGCATGTACTGGAGACGCTACTCCCCGCTGTCATCGAGGGCTCA
CTTGAGTGAGAAGCAAGGCCATCAGAGGGCTGCTTCGGAGACATTTCCCC
ATCGGCATGAAACGTTGGACGAAATAGTCGAGACGCTACGGACATTTACC
ACACGTTGCAATATTCTCCTGGAGCCACTCGTTGAATTTACCGACTTCTT
ATCCACGCAGAGGACGGCGACTTCTGCCACTACCCGACCAGCTCTGACGA
CATTATTCTTTCGAATCCTCTTCGTGACTCCAATTTGGATCGCCTTGACT
CTTCCGCCGTTGTATCTGATCACCACTCGCCGAGTCATCATGACACTTGG
CACCATCATTCTCACCTATCACTCTCGCCCGGCAAGAGTATCTCGTGTCA
TTCTTTGGCGATCGTTAACAATCCGCCGGGTGTGCTCTATAATTACGGGG
CTATCCTTCTCTTCTACTGTTGATAAGGCGCAGTCGCTGTTAATGCAGAG
CCAGGGCCATGCAATGAGCATTGCGACAAGACGTCGAGGAGACTCCTCCG
GTGTACGATTTACCTTTGTCATCTATGAAAACCAACGTCGTTGGCTTGGG
ATCGGCTGGACGTACTCTCTGTTCCCTTCCGAGCGAGCTGCTTGGACAGA
CGAGCATTTAAATCACGTCCCGTCGAAGGAGGAATTCGAGTTACCCGGTG
TCGCAAACGGCAATGCTCAGTGGCGCTGGGTCGAAGGGAGTGACTGGCGT
ATTGAAGGGGCCGACGAGTCAGGAAAGTCGGATGCCAAAGCCGATGGCGG
AGGCTGGGTCTACTATGACAATAAGATGGCAGCTCTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001874-T1.utr3p1 | KJC3_001874-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001874-T1.utr5p1 | KJC3_001874-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010482 |
| DBxref | InterPro:IPR006614 |
| DBxref | PFAM:PF06398 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:930897..933477 - |
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