You are here

Home

KJC3_001878-T1, KJC3_001878-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001878-T1
Unique NameKJC3_001878-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:940292..942520-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001878-T1 ID=KJC3_001878-T1|Name=KJC3_001878-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2229bp|location=Sequence derived from alignment at ch2:940292..942520- (Aspergillus niger KJC3)
CTCTTTTGTATGGTCTACGGTAATTTGGCTGTCTAGGCATGTCATAGTAT
GAGGGAACAAGGTATGGAACAATCAGCGTAGCATCTTCTATTACTACTCC
ATGAGATCTAGATCAGATAGGTACAAGCAGGTCGTCCTCCGATTCTATTC
ATATGGCCCTTTAAAGCGATAAGTTTATTTCTGTATGATAAAAACAAAGA
GCTATCAGTATAGTCTTCAACAAGTAGTTGAGAAATATGGAAACGTACGG
GGCACTGGCACTGGCCGGCGGGGCACTGGCAAGAGGCGCCGCAGCTGCAA
CCGTGGTCGTTACCTGTGGGTGAGCGACGTTAGCAACCTTGTATACCCAG
TTGATAACAAAATATTATGAAGTTATATGAGCAAGAGGATTTGCCAGGGC
ACAGATGACGAGTCGAAGCAAACATCAAACAGATTCAAAGTCCCATCCAT
CCATACCCCGCACTAGTAAACAAACAAGACAAGGATGCTTCAAGGGGACT
AAGCAAAACACTTACCCATGATGACTGGTTTTAAAGAAGTAGAAGAGTCT
TCTGGATTTGGGTGTCAAAGGACAAAAGTCTTCTTTTTCTCGAAGATGGA
AAGAAAAAGTGGTCAGGGTGGTGGCAGTGATTTGGGAGACGGGAAGAAAG
AGAGAGCGGGGTATTTATAGTTGCGAGGGTCTTAGCGGGTCTGAACTTGA
GCACATTTCTGCACGTCGTCTCCAGTCACCATCGCCAGCCATCTTCCTGA
CTGGATACCATCTATCCTGTTGCTGCAGGTTGGTCGTAAGCTCTTTTCTA
TGCTTGATGCAGCAGGGCAGATGCATGGATTACTACATCATTGTTTTTAC
TCTTGCTTTCTCTCCCAGCTAACATTATATTGTGACCCAGATAGTGAATG
ACCTGCAGCTGAACTCGATCAAGCACTCTACAGTGAGATAAATTCAACTA
CTTTTACAGCTATTGGCCGACCGTTGAACATGCAGGGGGACAAGGTGACA
CCAATTTCTTGCCTGTGTGGAGATGTGGCACAGGAAGTCGAGCTGAAGCA
GTCCGCCAACCATTCGGCACTCAACTTCTGTCATTGCACCGCCTGTCGCA
CGGTCACCGGAATGCTGTGCTCTACATACTACCCCCTGCAGGCTGGGCCA
GAGAGCCTTGACAGCCTCCAGGTGTACCAGGAAGCTGATTGCATAAGCCG
CTACTTTTGTAAGACTTGTGGCGCTCATGTCTTTGCCCACGCCAAAAACA
CAGGGCAATTTTTTGTCGCAGCCGGACTGCTGGTGGGGAGACTACCCCCG
ACTAATTCTATACGGCATTGGCGGGCTGCCGAGACGCGTGATGGTGGCCT
GACGCCCTTTCTCTCTGGACAGCCAGAAGAATCTGCTCCAGCATGTTGGC
TACGCACTGTTCCGAGCAACCAAGCAAGCCATACCGAGGTCGGACTCGAG
CTCTCGTCCCGGGATTCTGACGAGCTACTTGCCCGTTGTCATTGCGGGGG
CGTTGAATTTTATATCACGCGGCCCGATTCTTCATCCACTAAGCCAACGT
CACCGTGGTCCGATCTGCTCGCACCGTATCATTCAAGCTCCTCAAGCAAT
CCACAAGACGTGAAGTGGTGGCTGCAGGATGAAAATACTAAGTATTTGGC
GGGTACCTGCGCCTGTCCATCCTGTCGTCTAGCCAGTGGTTTCCCCATTC
AGCCATGGGCGTTTGTTCCTTTATCGAATCTCTACAACACCCGTAAGGCG
CCACTGGCATTTGGCACCGGTACGATGCGGCAGTACAAGAGTTCTCCAGG
CGTTTACCGCGAGTTCTGCAGTCGCTGCGGTGCATCCATCTTCTGGCACG
ATGACGAAAGGCCACTGCTGATAGACGTGAGTGTTGGCCTCCTTCGAGCA
GAAGAGGGTTCTAGGGCCAGTGGGTGGTTGAAATGGGCCACGCAAAGAGT
AAGTTTTGCGGAGATGGCAGCAGATCAGGCGTTGATCCAACAGCTGCAAA
ATGGGCTGAAGATATTTGGGGACGGAAATTAGGATGCACAGTAGTTTTGA
ACCATGCTTGCCATTCCATACGTTAACCGTATATTCATCTAGTTTATCTG
GTTGTAGTAACTATAGCTGTTTAATGGGCCGGCGGAGATAAGGAAAAGTG
GGATGGAGGGTTATCCTCACCGCTTTCCCAACGCAGCCCAAGACTTTCAT
TCCGCCGCCGCCGTTGAAAAAAAGATCCG
back to top

Coding sequence (CDS) from alignment at ch2:940292..942520-

>KJC3_001878-T1 ID=KJC3_001878-T1|Name=KJC3_001878-T1|organism=Aspergillus niger KJC3|type=CDS|length=921bp|location=Sequence derived from alignment at ch2:940292..942520- (Aspergillus niger KJC3)
ATGCTGTGCTCTACATACTACCCCCTGCAGGCTGGGCCAGAGAGCCTTGA
CAGCCTCCAGGTGTACCAGGAAGCTGATTGCATAAGCCGCTACTTTTGTA
AGACTTGTGGCGCTCATGTCTTTGCCCACGCCAAAAACACAGGGCAATTT
TTTGTCGCAGCCGGACTGCTGGTGGGGAGACTACCCCCGACTAATTCTAT
ACGGCATTGGCGGGCTGCCGAGACGCGTGATGGTGGCCTGACGCCCTTTC
TCTCTGGACAGCCAGAAGAATCTGCTCCAGCATGTTGGCTACGCACTGTT
CCGAGCAACCAAGCAAGCCATACCGAGGTCGGACTCGAGCTCTCGTCCCG
GGATTCTGACGAGCTACTTGCCCGTTGTCATTGCGGGGGCGTTGAATTTT
ATATCACGCGGCCCGATTCTTCATCCACTAAGCCAACGTCACCGTGGTCC
GATCTGCTCGCACCGTATCATTCAAGCTCCTCAAGCAATCCACAAGACGT
GAAGTGGTGGCTGCAGGATGAAAATACTAAGTATTTGGCGGGTACCTGCG
CCTGTCCATCCTGTCGTCTAGCCAGTGGTTTCCCCATTCAGCCATGGGCG
TTTGTTCCTTTATCGAATCTCTACAACACCCGTAAGGCGCCACTGGCATT
TGGCACCGGTACGATGCGGCAGTACAAGAGTTCTCCAGGCGTTTACCGCG
AGTTCTGCAGTCGCTGCGGTGCATCCATCTTCTGGCACGATGACGAAAGG
CCACTGCTGATAGACGTGAGTGTTGGCCTCCTTCGAGCAGAAGAGGGTTC
TAGGGCCAGTGGGTGGTTGAAATGGGCCACGCAAAGAGTAAGTTTTGCGG
AGATGGCAGCAGATCAGGCGTTGATCCAACAGCTGCAAAATGGGCTGAAG
ATATTTGGGGACGGAAATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0016846carbon-sulfur lyase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001878KJC3_001878Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001878-T1KJC3_001878-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001878-T1.cdsKJC3_001878-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001878-T1.utr3p1KJC3_001878-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001878-T1.exon3KJC3_001878-T1.exon3Aspergillus niger KJC3exon
KJC3_001878-T1.exon2KJC3_001878-T1.exon2Aspergillus niger KJC3exon
KJC3_001878-T1.exon1KJC3_001878-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001878-T1.utr5p3KJC3_001878-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_001878-T1.utr5p2KJC3_001878-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001878-T1.utr5p1KJC3_001878-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011057
DBxrefInterPro:IPR006913
DBxrefPFAM:PF04828
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:940292..942520 -
Powered by Drupal