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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:947588..948846+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001880-T1 ID=KJC3_001880-T1|Name=KJC3_001880-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1259bp|location=Sequence derived from alignment at ch2:947588..948846+ (Aspergillus niger KJC3)
TTCTGGCCAGCTGGTGATAATCGCCCGCCCATTCTGGGGCTCGCTGACTC
AGCTCCTTATCGGCCTGCCGCTGTTTCTGTAAATGAGTGGCGAGCGCGCA
ATAAGTCGAACTTCTCTTCTACTACTCTCAGTTACCATTTCCTTGTTCTT
CCAGCGACAACATGGGTAATGATGGTGGCAGGTATGCTCAACAAGCCTCT
TACAATCTCCCCACTCTATCAAAAAGCACAAACTAACTAACCACCCGCAT
CACCAGTATCCCAACCCGTCGCGAGCTCGTCCGCGAAGCGGCCCGCAACC
CCAGCACAGCGCAAGTGAAAGAGGCGCAGCGCGAACAACAAGAACACTCG
TGGACGACATGTCCGATATCGCACAACCAGTTGATGCGACCCATTGTCTC
CGACAGCGTCGGGAATCTCTACAACAAAGACGCCATTCTCAGATTCCTTC
TTCCCGGCGACGAAGCCGATGGCATCAGCTCCAAGGCCGATTGCGAAGAG
ATCCTCTGTGGACGGGTCAAGGGACTCCGGGACGTCGTGGAGCTGAAGTT
TGAAGTCGACACAGAGCGCGAAGCCCATCCCGCGAATGGAAAGCAGGACA
AGCGTGAGGGGTGGATCTGTCCCGTCACGGCGAAGCAGTTGGGTCCCAAT
GTAAAGTCGGTTTATCTGGTGCCGTGCGGTCATGTTTTCTCGGAGGAGGC
AATCCGCCAACTTAAGGGAGATAAGTGTTTGCAGGTATGTTATCTCAGCC
CATACGTTTTTGGTCTTCATGTTGGTGCTAATGAGATCTAGTGCGACGAG
CCATACACCCCCGACAACGTGATTCCCATCCTTCCCACAAAAGAAGCCGA
CAAACAGCAGCTCATTGAGCGTGGACATAAGCTTGCAGAACAAGGTCTCA
CGCACTCTTTGAAAAAGGCCCCCGGCTCGAAGAAGCGCAAGAAGAACGCC
GCGAATGGTGATGCGGCGGATGCGGGCAAGGAACCAAAGCCCACGGAAAA
ATCTACGAGTGCGACTGCCAGTCGGAGCAACACATCTACACCCACACCGG
GTGGCTCGAGTGGTATCAAGAATGCTGCTACTGCATTGCTGACGGCGCGG
GTGCTGGAGGAGGAAAACGAGAAGAAAAAGCGGCGGAAGATGCTGGGGAC
TAGTGACAATATTAGCAGTCTCTTCACAAAGGAGACTAAGGATGGCCATG
CCAAGAATACGGATTTCATGACGAGAGGATATAGTCTTCCTGCGGCGGCT
AGGAAGTAG back to topCoding sequence (CDS) from alignment at ch2:947588..948846+ >KJC3_001880-T1 ID=KJC3_001880-T1|Name=KJC3_001880-T1|organism=Aspergillus niger KJC3|type=CDS|length=2898bp|location=Sequence derived from alignment at ch2:947588..948846+ (Aspergillus niger KJC3)
ATGGGTAATGATGGTGGCAGTATCCCAACCCGTCGCGAGCTCGTCCGCGA
AGCGGCCCGCAACCCCAGCACAGCGCAAGTGAAAGAGGCGCAGCGCGAAC
AACAAGAACACTCGTGGACGACATGTCCGATATCGCACAACCAGTTGATG
CGACCCATTGTCTCCGACAGCGTCGGGAATCTCTACAACAAAGACGCCAT
TCTCAGATTCCTTCTTCCCGGCGACGAAGCCGATGGCATCAGCTCCAAGG
CCGATTGCGAAGAGATCCTCTGTGGACGGGTCAAGGGACTCCGGGACGTC
GTGGAGCTGAAGTTTGAAGTCGACACAGAGCGCGAAGCCCATCCCGCGAA
TGGAAAGCAGGACAAGCGTGAGGGGTGGATCTGTCCCGTCACGGCGAAGC
AGTTGGGTCCCAATGTAAAGTCGGTTTATCTGGTGCCGTGCGGTCATGTT
TTCTCGGAGGAGGCAATCCGCCAACTTAAGGGAGATAAGTGTTTGCAGTG
CGACGAGCCATACACCCCCGACAACGTGATTCCCATCCTTCCCACAAAAG
AAGCCGACAAACAGCAGCTCATTGAGCGTGGACATAAGCTTGCAGAACAA
GGTCTCACGCACTCTTTGAAAAAGGCCCCCGGCTCGAAGAAGCGCAAGAA
GAACGCCGCGAATGGTGATGCGGCGGATGCGGGCAAGGAACCAAAGCCCA
CGGAAAAATCTACGAGTGCGACTGCCAGTCGGAGCAACACATCTACACCC
ACACCGGGTGGCTCGAGTGGTATCAAGAATGCTGCTACTGCATTGCTGAC
GGCGCGGGTGCTGGAGGAGGAAAACGAGAAGAAAAAGCGGCGGAAGATGC
TGGGGACTAGTGACAATATTAGCAGTCTCTTCACAAAGGAGACTAAGGAT
GGCCATGCCAAGAATACGGATTTCATGACGAGAGGATATAGTCTTCCTGC
GGCGGCTAGGAAGTAGATGGGTAATGATGGTGGCAGTATCCCAACCCGTC
GCGAGCTCGTCCGCGAAGCGGCCCGCAACCCCAGCACAGCGCAAGTGAAA
GAGGCGCAGCGCGAACAACAAGAACACTCGTGGACGACATGTCCGATATC
GCACAACCAGTTGATGCGACCCATTGTCTCCGACAGCGTCGGGAATCTCT
ACAACAAAGACGCCATTCTCAGATTCCTTCTTCCCGGCGACGAAGCCGAT
GGCATCAGCTCCAAGGCCGATTGCGAAGAGATCCTCTGTGGACGGGTCAA
GGGACTCCGGGACGTCGTGGAGCTGAAGTTTGAAGTCGACACAGAGCGCG
AAGCCCATCCCGCGAATGGAAAGCAGGACAAGCGTGAGGGGTGGATCTGT
CCCGTCACGGCGAAGCAGTTGGGTCCCAATGTAAAGTCGGTTTATCTGGT
GCCGTGCGGTCATGTTTTCTCGGAGGAGGCAATCCGCCAACTTAAGGGAG
ATAAGTGTTTGCAGTGCGACGAGCCATACACCCCCGACAACGTGATTCCC
ATCCTTCCCACAAAAGAAGCCGACAAACAGCAGCTCATTGAGCGTGGACA
TAAGCTTGCAGAACAAGGTCTCACGCACTCTTTGAAAAAGGCCCCCGGCT
CGAAGAAGCGCAAGAAGAACGCCGCGAATGGTGATGCGGCGGATGCGGGC
AAGGAACCAAAGCCCACGGAAAAATCTACGAGTGCGACTGCCAGTCGGAG
CAACACATCTACACCCACACCGGGTGGCTCGAGTGGTATCAAGAATGCTG
CTACTGCATTGCTGACGGCGCGGGTGCTGGAGGAGGAAAACGAGAAGAAA
AAGCGGCGGAAGATGCTGGGGACTAGTGACAATATTAGCAGTCTCTTCAC
AAAGGAGACTAAGGATGGCCATGCCAAGAATACGGATTTCATGACGAGAG
GATATAGTCTTCCTGCGGCGGCTAGGAAGTAGATGGGTAATGATGGTGGC
AGTATCCCAACCCGTCGCGAGCTCGTCCGCGAAGCGGCCCGCAACCCCAG
CACAGCGCAAGTGAAAGAGGCGCAGCGCGAACAACAAGAACACTCGTGGA
CGACATGTCCGATATCGCACAACCAGTTGATGCGACCCATTGTCTCCGAC
AGCGTCGGGAATCTCTACAACAAAGACGCCATTCTCAGATTCCTTCTTCC
CGGCGACGAAGCCGATGGCATCAGCTCCAAGGCCGATTGCGAAGAGATCC
TCTGTGGACGGGTCAAGGGACTCCGGGACGTCGTGGAGCTGAAGTTTGAA
GTCGACACAGAGCGCGAAGCCCATCCCGCGAATGGAAAGCAGGACAAGCG
TGAGGGGTGGATCTGTCCCGTCACGGCGAAGCAGTTGGGTCCCAATGTAA
AGTCGGTTTATCTGGTGCCGTGCGGTCATGTTTTCTCGGAGGAGGCAATC
CGCCAACTTAAGGGAGATAAGTGTTTGCAGTGCGACGAGCCATACACCCC
CGACAACGTGATTCCCATCCTTCCCACAAAAGAAGCCGACAAACAGCAGC
TCATTGAGCGTGGACATAAGCTTGCAGAACAAGGTCTCACGCACTCTTTG
AAAAAGGCCCCCGGCTCGAAGAAGCGCAAGAAGAACGCCGCGAATGGTGA
TGCGGCGGATGCGGGCAAGGAACCAAAGCCCACGGAAAAATCTACGAGTG
CGACTGCCAGTCGGAGCAACACATCTACACCCACACCGGGTGGCTCGAGT
GGTATCAAGAATGCTGCTACTGCATTGCTGACGGCGCGGGTGCTGGAGGA
GGAAAACGAGAAGAAAAAGCGGCGGAAGATGCTGGGGACTAGTGACAATA
TTAGCAGTCTCTTCACAAAGGAGACTAAGGATGGCCATGCCAAGAATACG
GATTTCATGACGAGAGGATATAGTCTTCCTGCGGCGGCTAGGAAGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001880-T1.utr5p1 | KJC3_001880-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027799 |
| DBxref | PFAM:PF04641 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:947588..948846 + |
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