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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:992622..994372+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001899-T1 ID=KJC3_001899-T1|Name=KJC3_001899-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1751bp|location=Sequence derived from alignment at ch2:992622..994372+ (Aspergillus niger KJC3)
AACAAGTCTTTCTGCTGATGTTCTTCACGGGTCTCCACTCGGTCCCGCCA
TTGGCCCAAACCATGTTAGTCGGTCACGTGCCCTTATCTCTGCCGATCAG
TTACGGCTGCCTCAGGCGCCCCTCCTTTCCTTCCATTTCCGGCGCATCGA
TTCTCCGCTTCTCTCTTTCTTCCTCTTCTTCTTCTTCTTTGTTTCCTCCC
CTACTCCCTCATTCCTGATTTCGCCGTATACTCACCCTGCCATGCCCTTG
CGCGTTACCTCGGCTCCTGTTTCTGGTATCAAGAAGAACCGAAAACCCGC
TATTTCGAGGCCGCGGGCCTCTCCCTTCGCCGCCCATGCCCGTCGCAAAC
CTTCGGCGCCGTCATCATCCGGCACTTCCAAGATCTCCAGCGAGCAGGAC
GAGTGCGAGCAGGGCCCCCTTCCAGATCTCGGGCCGTCGCGATACATCTC
CGAAACTGCCTCCGTAACGGATGTGGTTGAGGCGCTCCAGTACATTCGCA
ACAGCATGTTTGACGATCTTCCCCGCCGAGCGGGCATGAATAGCACGCGC
ATCGCCGAGGTTCTTAACTTCCGTCGCTCCCTGCCTCCCCTTGCCTCCGT
CGCACACGTTCATACGCTGCTGGAAGCACCCACCAAGGTCGAAAAGGAAA
TTATGGAGCTCGTTCGCGCCGGTCGGGTCCGCCGCTTGATCGTCCCCGGA
AGAGGCAACGATGCCGCTGGCTTGGGCGATTGCTTGGTATTGAGCGAGGA
ATGGGACGGATTGGTACTAGATAGCCCTGCTTTGGAAGCACCTCTGAAAG
GTGAGAATCTCGCTACCATTCAGTCATTCATACAGCAAACTGATCCGTGT
CAGAGAAATTCCTCGCGCTGCTTGGTCGGATCGGAAACACGTGTGCAATT
CCTGGGGCAGCCCTCACTCCGCCGGAGTGTATGGCCCTGGTCCGGGCTGG
ATTTCTCGTCTCTTCTTCGTCCCTAGCGAAAGGCTCGTCTAGCTTAGCTT
CTCTCCCCGTCTTTCCTGCGACCTCGCCCAGTCCAGCCTCAGCAAGCCGA
AGTGGCGCTTACCCTCTAAGCGAGGTTGGAGCAAACCCTCGTTCATCATC
AACTACTGCGACACTTTTCCTATCGCTTCCCAATACGGGCCCCTACCTTC
GTCTACTGAGCGCTGGCCGCTCACACCTCCTCTCGCTTCTGAAGAAGTCT
AGTTCAAGCGAGGTCCCCGTTTACCTCCTGCGTGACCGCTGGGACGGGGC
GGTCGAGAGTGAAAAGAGCTTCAGTGTAGCGAAGAGAGCCCGGGGGGAGT
TTTCCGGCATCTTGCCGGGCCGGACGAAAAAGTACAAGGAGCTCTTCGGA
ATGAACTTTCGCTGGGTTCTGGAGGAGGCGCTCGGGGCGGGATTGGTCGA
AGTCTTTGACACTGGCAGCGTTGGTCCCGGGGTGCGTTGCCTGTGATCGA
GTGGATTGTCCGATCAAGGATGGTTCTAGACCAAATGACCCGAGGCATGA
AGTGAAGAATGCTGCCATATAAGCTTGGCTGCGTTTCGATGCGTGCTTGC
CAAAGTTTGTCTGCCACGGACGCGACGCCGACAGGCCCGTAGTCGAACGA
ATCAGTCGGCTTCTCACGACCAAATGATTGTCAATGTTCCACATTGCTCT
CCGGAGCATGTGAGCTCACGAATATATAAACCAAATAGATCATGTACATA
GCCTAGCATATACCCAGACCAATTCATACTATATAATGCGTAGTGTCGAT
G back to topCoding sequence (CDS) from alignment at ch2:992622..994372+ >KJC3_001899-T1 ID=KJC3_001899-T1|Name=KJC3_001899-T1|organism=Aspergillus niger KJC3|type=CDS|length=2304bp|location=Sequence derived from alignment at ch2:992622..994372+ (Aspergillus niger KJC3)
ATGCCCTTGCGCGTTACCTCGGCTCCTGTTTCTGGTATCAAGAAGAACCG
AAAACCCGCTATTTCGAGGCCGCGGGCCTCTCCCTTCGCCGCCCATGCCC
GTCGCAAACCTTCGGCGCCGTCATCATCCGGCACTTCCAAGATCTCCAGC
GAGCAGGACGAGTGCGAGCAGGGCCCCCTTCCAGATCTCGGGCCGTCGCG
ATACATCTCCGAAACTGCCTCCGTAACGGATGTGGTTGAGGCGCTCCAGT
ACATTCGCAACAGCATGTTTGACGATCTTCCCCGCCGAGCGGGCATGAAT
AGCACGCGCATCGCCGAGGTTCTTAACTTCCGTCGCTCCCTGCCTCCCCT
TGCCTCCGTCGCACACGTTCATACGCTGCTGGAAGCACCCACCAAGGTCG
AAAAGGAAATTATGGAGCTCGTTCGCGCCGGTCGGGTCCGCCGCTTGATC
GTCCCCGGAAGAGGCAACGATGCCGCTGGCTTGGGCGATTGCTTGGTATT
GAGCGAGGAATGGGACGGATTGGTACTAGATAGCCCTGCTTTGGAAGCAC
CTCTGAAAGAGAAATTCCTCGCGCTGCTTGGTCGGATCGGAAACACGTGT
GCAATTCCTGGGGCAGCCCTCACTCCGCCGGAGTGTATGGCCCTGGTCCG
GGCTGGATTTCTCGTCTCTTCTTCGTCCCTAGCGAAAGGCTCGTCTAGCT
TAGCTTCTCTCCCCGTCTTTCCTGCGACCTCGCCCAGTCCAGCCTCAGCA
AGCCGAAGTGGCGCTTACCCTCTAAGCGAGGTTGGAGCAAACCCTCGTTC
ATCATCAACTACTGCGACACTTTTCCTATCGCTTCCCAATACGGGCCCCT
ACCTTCGTCTACTGAGCGCTGGCCGCTCACACCTCCTCTCGCTTCTGAAG
AAGTCTAGTTCAAGCGAGGTCCCCGTTTACCTCCTGCGTGACCGCTGGGA
CGGGGCGGTCGAGAGTGAAAAGAGCTTCAGTGTAGCGAAGAGAGCCCGGG
GGGAGTTTTCCGGCATCTTGCCGGGCCGGACGAAAAAGTACAAGGAGCTC
TTCGGAATGAACTTTCGCTGGGTTCTGGAGGAGGCGCTCGGGGCGGGATT
GGTCGAAGTCTTTGACACTGGCAGCGTTGGTCCCGGGGTGCGTTGCCTGT
GAATGCCCTTGCGCGTTACCTCGGCTCCTGTTTCTGGTATCAAGAAGAAC
CGAAAACCCGCTATTTCGAGGCCGCGGGCCTCTCCCTTCGCCGCCCATGC
CCGTCGCAAACCTTCGGCGCCGTCATCATCCGGCACTTCCAAGATCTCCA
GCGAGCAGGACGAGTGCGAGCAGGGCCCCCTTCCAGATCTCGGGCCGTCG
CGATACATCTCCGAAACTGCCTCCGTAACGGATGTGGTTGAGGCGCTCCA
GTACATTCGCAACAGCATGTTTGACGATCTTCCCCGCCGAGCGGGCATGA
ATAGCACGCGCATCGCCGAGGTTCTTAACTTCCGTCGCTCCCTGCCTCCC
CTTGCCTCCGTCGCACACGTTCATACGCTGCTGGAAGCACCCACCAAGGT
CGAAAAGGAAATTATGGAGCTCGTTCGCGCCGGTCGGGTCCGCCGCTTGA
TCGTCCCCGGAAGAGGCAACGATGCCGCTGGCTTGGGCGATTGCTTGGTA
TTGAGCGAGGAATGGGACGGATTGGTACTAGATAGCCCTGCTTTGGAAGC
ACCTCTGAAAGAGAAATTCCTCGCGCTGCTTGGTCGGATCGGAAACACGT
GTGCAATTCCTGGGGCAGCCCTCACTCCGCCGGAGTGTATGGCCCTGGTC
CGGGCTGGATTTCTCGTCTCTTCTTCGTCCCTAGCGAAAGGCTCGTCTAG
CTTAGCTTCTCTCCCCGTCTTTCCTGCGACCTCGCCCAGTCCAGCCTCAG
CAAGCCGAAGTGGCGCTTACCCTCTAAGCGAGGTTGGAGCAAACCCTCGT
TCATCATCAACTACTGCGACACTTTTCCTATCGCTTCCCAATACGGGCCC
CTACCTTCGTCTACTGAGCGCTGGCCGCTCACACCTCCTCTCGCTTCTGA
AGAAGTCTAGTTCAAGCGAGGTCCCCGTTTACCTCCTGCGTGACCGCTGG
GACGGGGCGGTCGAGAGTGAAAAGAGCTTCAGTGTAGCGAAGAGAGCCCG
GGGGGAGTTTTCCGGCATCTTGCCGGGCCGGACGAAAAAGTACAAGGAGC
TCTTCGGAATGAACTTTCGCTGGGTTCTGGAGGAGGCGCTCGGGGCGGGA
TTGGTCGAAGTCTTTGACACTGGCAGCGTTGGTCCCGGGGTGCGTTGCCT
GTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001899-T1.utr5p1 | KJC3_001899-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001899-T1.utr3p1 | KJC3_001899-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018865 |
| DBxref | PFAM:PF10494 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:992622..994372 + |
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