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KJC3_001906-T1, KJC3_001906-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001906-T1
Unique NameKJC3_001906-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1019832..1021681-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001906-T1 ID=KJC3_001906-T1|Name=KJC3_001906-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1850bp|location=Sequence derived from alignment at ch2:1019832..1021681- (Aspergillus niger KJC3)
AGCATCATTTTGCCAACAGTACGGCGGGAGTTTCCAGTGGTATATATATA
TAATATTACTCTATCAGGTGATTCAATAAATTCCATACCTAAACGCTTGT
CGGTCAGGCAACTAATCCATCCAAAGGTCCACTGAGCAAAGGAAACAGTG
GCAAAGCAAAGCGAAAGGCTAGAAGTTGCGCACCAAGTGATATTCATATC
TATTTGGATACTGTGATTCACTCCCTACTTCATCTATACAGTGTCCTGCT
CGCTTTTTGGGCGCCTGTACACTTACAGCCCTCATAAAAGTCCGAGATAT
TCAATATCGCTCCCAGCTATTTCACTATTTTGGTATACGCACCTTTGGAT
ATAGCCAAGACTACAAAATGAACGCACCAGACCGGTAGGTGGAACGTTCT
TCTTACATCTACGCAGTCTATCTTGTAGCATGCTTTATTCCCACTTGGTT
TCCGCGCCCCTTCCTCTCCTCCCCCACCATTTGGCTTGTTCTAGGTTCGG
GAGCTGTTCGCTGGTGGGAATGGTGTGACTGATGTCTCAATGCGGACGGT
GCCATTAACCGGGCACATGCTCTTGCCTTCCCCCCTCCATTCACTGCCCC
AGAGTGCCGAACTATGTTATGGACTCCACTCCTGTCCCTCTTCCTCTCCC
TCAGTTCATTTCAATGTTTATGCCCCTTGTCCAGATCTCTCATTGAATGG
ATTGACCTCGTACTTTGCGTTGTCTTCACCCCCTAGCATTCCTGTCATAT
TGTGAATCTTTCTCGAACACAACGATTTTAAGAATGGAATCCATCATGCC
TGCAGAAATGGTGTATGCGCGCCTGAAGAATGGCAGTGGTGGATCTCGCG
TTCGCTGCCAGTCTACCGTCAACGTTTCTCATGACCAGCAGCCGAGGTCC
GCTTCGGGTTTTCTTTGAAGATTCTACTTGCCTTCATTTGTGAAGCTTCT
AATACATTCGGTCCACTGACTCGGTATGAAACCTAGATACGAATCGTTCG
TTCTTGCGAATGGCGAGAATAAAGTCGAGATGGAGATCGATACTCGTATG
TCATCCAAACCTCGCACCTAAACGGTCTGCGTTCATTTCTAACATGGGCT
TCTTGTTCTAGGAATCCCATCTTCTGCCATCTTCACCTTCAATAAGGAAG
ATCACACGTTGGGAAATTTGATCCGCTCTCGCCTCTTGCAAAGCTCTCAT
GTTCTCTTCGCTGCGTACAAGGTATGTCTGCGATCGTGATTTATCCTCGT
GTCTATTTCCGGGCATTCTTCATGCTCCCAGTTGCTGCTTTTATCAGATC
TGTGGGGTTAGTTTGCGTAAGGGTCTGACGTGACTGTCATAGGTTCCCCA
TCCGCTTGTTCCCAATTTCCAGCTTCGAGTTCAGACCGATGGCGATATCA
CCCCAAAGGATGCGGTAATTGCAGCCTGCCATGAGCTTGTTCGGGACCTG
GGTATCCTCTCTCGGGAGTTTACTAAGGAATATGAGCTCCGTAAGATGGT
GGGGGCTACCGCCCAGCAGCAGAATGGCGTCCAGGATGGTGTTTAGCCAT
CAACAGGTGGAGATAGGGCATGAAGAGCTGGGTCAGCGGTCACTCACATG
CTTTCGCTTCAGATATACGCAGCTGGTCATGCGTGTCTTTGTTTCATGGT
CATACCCTTTATTCTATGTTTGTTCTCTTTGCTTCCAGTGATTAGCGGGA
CCAAGCCCTTCGCTCCAACTTGCCTTGGAACAGAAAGTCATTTGCTGCCG
TAGCTGTCAATCAGTCAACACGTCCATATATCTGCCCCGCCTTTAATTTG
TTGTAGGCTTGGGCCCGGTAGCGACCTAAATAGATGAGAACCGTCTGGTG
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Coding sequence (CDS) from alignment at ch2:1019832..1021681-

>KJC3_001906-T1 ID=KJC3_001906-T1|Name=KJC3_001906-T1|organism=Aspergillus niger KJC3|type=CDS|length=1848bp|location=Sequence derived from alignment at ch2:1019832..1021681- (Aspergillus niger KJC3)
GTTCCCCATCCGCTTGTTCCCAATTTCCAGCTTCGAGTTCAGACCGATGG
CGATATCACCCCAAAGGATGCGGTAATTGCAGCCTGCCATGAGCTTGTTC
GGGACCTGGGTATCCTCTCTCGGGAGTTTACTAAGGAATATGAGCTCCGT
AAGATGGTGGGGGCTACCGCCCAGCAGCAGAATGGCGTCCAGGATGGTGT
TTAGGAATCCCATCTTCTGCCATCTTCACCTTCAATAAGGAAGATCACAC
GTTGGGAAATTTGATCCGCTCTCGCCTCTTGCAAAGCTCTCATGTTCTCT
TCGCTGCGTACAAGATACGAATCGTTCGTTCTTGCGAATGGCGAGAATAA
AGTCGAGATGGAGATCGATACTCATGGTGTATGCGCGCCTGAAGAATGGC
AGTGGTGGATCTCGCGTTCGCTGCCAGTCTACCGTCAACGTTTCTCATGA
CCAGCAGCCGAGGTTCCCCATCCGCTTGTTCCCAATTTCCAGCTTCGAGT
TCAGACCGATGGCGATATCACCCCAAAGGATGCGGTAATTGCAGCCTGCC
ATGAGCTTGTTCGGGACCTGGGTATCCTCTCTCGGGAGTTTACTAAGGAA
TATGAGCTCCGTAAGATGGTGGGGGCTACCGCCCAGCAGCAGAATGGCGT
CCAGGATGGTGTTTAGGAATCCCATCTTCTGCCATCTTCACCTTCAATAA
GGAAGATCACACGTTGGGAAATTTGATCCGCTCTCGCCTCTTGCAAAGCT
CTCATGTTCTCTTCGCTGCGTACAAGATACGAATCGTTCGTTCTTGCGAA
TGGCGAGAATAAAGTCGAGATGGAGATCGATACTCATGGTGTATGCGCGC
CTGAAGAATGGCAGTGGTGGATCTCGCGTTCGCTGCCAGTCTACCGTCAA
CGTTTCTCATGACCAGCAGCCGAGGTTCCCCATCCGCTTGTTCCCAATTT
CCAGCTTCGAGTTCAGACCGATGGCGATATCACCCCAAAGGATGCGGTAA
TTGCAGCCTGCCATGAGCTTGTTCGGGACCTGGGTATCCTCTCTCGGGAG
TTTACTAAGGAATATGAGCTCCGTAAGATGGTGGGGGCTACCGCCCAGCA
GCAGAATGGCGTCCAGGATGGTGTTTAGGAATCCCATCTTCTGCCATCTT
CACCTTCAATAAGGAAGATCACACGTTGGGAAATTTGATCCGCTCTCGCC
TCTTGCAAAGCTCTCATGTTCTCTTCGCTGCGTACAAGATACGAATCGTT
CGTTCTTGCGAATGGCGAGAATAAAGTCGAGATGGAGATCGATACTCATG
GTGTATGCGCGCCTGAAGAATGGCAGTGGTGGATCTCGCGTTCGCTGCCA
GTCTACCGTCAACGTTTCTCATGACCAGCAGCCGAGGTTCCCCATCCGCT
TGTTCCCAATTTCCAGCTTCGAGTTCAGACCGATGGCGATATCACCCCAA
AGGATGCGGTAATTGCAGCCTGCCATGAGCTTGTTCGGGACCTGGGTATC
CTCTCTCGGGAGTTTACTAAGGAATATGAGCTCCGTAAGATGGTGGGGGC
TACCGCCCAGCAGCAGAATGGCGTCCAGGATGGTGTTTAGGAATCCCATC
TTCTGCCATCTTCACCTTCAATAAGGAAGATCACACGTTGGGAAATTTGA
TCCGCTCTCGCCTCTTGCAAAGCTCTCATGTTCTCTTCGCTGCGTACAAG
ATACGAATCGTTCGTTCTTGCGAATGGCGAGAATAAAGTCGAGATGGAGA
TCGATACTCATGGTGTATGCGCGCCTGAAGAATGGCAGTGGTGGATCTCG
CGTTCGCTGCCAGTCTACCGTCAACGTTTCTCATGACCAGCAGCCGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005665RNA polymerase II, core complex
Vocabulary: Molecular Function
TermDefinition
GO:0001055RNA polymerase II activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription by RNA polymerase II
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001906KJC3_001906Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001906-T1KJC3_001906-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001906-T1.cdsKJC3_001906-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001906-T1.utr3p1KJC3_001906-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001906-T1.exon6KJC3_001906-T1.exon6Aspergillus niger KJC3exon
KJC3_001906-T1.exon5KJC3_001906-T1.exon5Aspergillus niger KJC3exon
KJC3_001906-T1.exon4KJC3_001906-T1.exon4Aspergillus niger KJC3exon
KJC3_001906-T1.exon3KJC3_001906-T1.exon3Aspergillus niger KJC3exon
KJC3_001906-T1.exon2KJC3_001906-T1.exon2Aspergillus niger KJC3exon
KJC3_001906-T1.exon1KJC3_001906-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001906-T1.utr5p3KJC3_001906-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_001906-T1.utr5p2KJC3_001906-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001906-T1.utr5p1KJC3_001906-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG0926591L
DBxrefInterPro:IPR037685
DBxrefInterPro:IPR008193
DBxrefInterPro:IPR009025
DBxrefInterPro:IPR036603
DBxrefPFAM:PF13656
DBxrefPFAM:PF01193
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1019832..1021681 -
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