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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1101464..1102200- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001929-T1 ID=KJC3_001929-T1|Name=KJC3_001929-T1|organism=Aspergillus niger KJC3|type=mRNA|length=737bp|location=Sequence derived from alignment at ch2:1101464..1102200- (Aspergillus niger KJC3)
AGGGGCTATTAACAACCTCCGGCTGCGACTTATGTATTCTTGGAGTCGCT
GAGAACTGTCTGATTACGTTCTACTTGTCTATAGGACTCTCAACTTCATC
ACTACTATTACAGACGCAGTAGTTCTATATCGTTTGGCTTTGCGCACACA
AGGCAGACAGTCATGGTAGTCCATCTAGCCCCAATCGCCATGAATACTCT
GAATTACGAAATATTGACTAAATACCCAGGCTCAAACACCTCAGCAAAGG
AAGGCCAACGAAAGGTTTGCGAAGCAGGAATCTGCAAAGCGTGGTAAAGG
CAAGACAGTTGCCAAGTCAAAGCAGACTCCAAGGTCGCCAGTGTCCACTG
TGTGGGTGGGTATGTTGCGAAGTGCTTTACAGCCACCTCAGTCACCAATG
CTAACATTAAAACAGCTATTCTCGCGTTCGTTGTCTGTGGAGGAATCTTC
CTTGAGATTCTGGGGATCATACCGAAGCTTTGGTCAACGATGGTCGCAAG
CATCAACCGCCTAATGCTCTGAGGCTATGGAGACTTGTAAGACTGTTTTA
AGTTGCTTTCAAAACAGCGGCGGTGATACCATTGATGTACCCAACTGATA
TCCCAAGTCTCTTGTTTTGTTCCGCGTTCCTGTTTTGCGCGCTACCGAGG
TTTTGGGTTCTTATTATTTGTCATGCCGTGAAAAGCGCAGGTCGCATGTG
CGGAACCACAATTAGACACTACTATGGTGACTCCGTG back to topCoding sequence (CDS) from alignment at ch2:1101464..1102200- >KJC3_001929-T1 ID=KJC3_001929-T1|Name=KJC3_001929-T1|organism=Aspergillus niger KJC3|type=CDS|length=720bp|location=Sequence derived from alignment at ch2:1101464..1102200- (Aspergillus niger KJC3)
CTATTCTCGCGTTCGTTGTCTGTGGAGGAATCTTCCTTGAGATTCTGGGG
ATCATACCGAAGCTTTGGTCAACGATGGTCGCAAGCATCAACCGCCTAAT
GCTCTGAGCTCAAACACCTCAGCAAAGGAAGGCCAACGAAAGGTTTGCGA
AGCAGGAATCTGCAAAGCGTGGTAAAGGCAAGACAGTTGCCAAGTCAAAG
CAGACTCCAAGGTCGCCAGTGTCCACTGTGTGGGTGGATGCTATTCTCGC
GTTCGTTGTCTGTGGAGGAATCTTCCTTGAGATTCTGGGGATCATACCGA
AGCTTTGGTCAACGATGGTCGCAAGCATCAACCGCCTAATGCTCTGAGCT
CAAACACCTCAGCAAAGGAAGGCCAACGAAAGGTTTGCGAAGCAGGAATC
TGCAAAGCGTGGTAAAGGCAAGACAGTTGCCAAGTCAAAGCAGACTCCAA
GGTCGCCAGTGTCCACTGTGTGGGTGGATGCTATTCTCGCGTTCGTTGTC
TGTGGAGGAATCTTCCTTGAGATTCTGGGGATCATACCGAAGCTTTGGTC
AACGATGGTCGCAAGCATCAACCGCCTAATGCTCTGAGCTCAAACACCTC
AGCAAAGGAAGGCCAACGAAAGGTTTGCGAAGCAGGAATCTGCAAAGCGT
GGTAAAGGCAAGACAGTTGCCAAGTCAAAGCAGACTCCAAGGTCGCCAGT
GTCCACTGTGTGGGTGGATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005783 | endoplasmic reticulum |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001929-T1.utr3p1 | KJC3_001929-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001929-T1.utr5p1 | KJC3_001929-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010580 |
| DBxref | PFAM:PF06624 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1101464..1102200 - |
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