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KJC3_001934-T2, KJC3_001934-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001934-T2
Unique NameKJC3_001934-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1198640..1199774-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001934-T2 ID=KJC3_001934-T2|Name=KJC3_001934-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1135bp|location=Sequence derived from alignment at ch2:1198640..1199774- (Aspergillus niger KJC3)
GTGGACGACGCGTTCTCCCTCATCTAATCATACAGATCATACATAGATGT
GACCGTATTGAAATTCTGCTTCTTTTGCGGACTCAGGATCAACTGAGTAT
TTGCGAGCTAGTATAAGTAGCGCGCCTCCCTCGTCACCGCGTCTCCCTCA
TTCTTATCCTCATCTTCACTCTATCCTCTGTCGACGCCAACGCAACCACC
GTATCCTATACCCTTATCACAACTTTCTTCACCTTTCACACCTAATCTCA
AAATCTTTCAATATGCCTCCCAAAGCCGCTGAGAAGAAGCCCAGCACCGG
TGGCAAGGCCCCGGCAGGCGGCAAGGCTCCCGCTGAGAAGAAGGAAGCCG
GCAAGAAGACTGCTGCCGCTGCCTCCGGCGACAAGAAGAAGCGTGGAAAG
ACCAGGAAGGAGACCTACTCGTCTTACATCTACAAGGGTGAGTAATCTTA
AGACTTGTATTCCTAGTCAATAGTTGTTGACTGTGTTATAGTCTTGAAGC
AGGTCCACCCTGATACCGGTATCTCGACTCGTGCTATGTCCATCCTGAAC
TCCTTTGTCAATGGTATGTCGTGAATGAAGCAGGGTTATACCTTCAGCAA
GCACCTAACGCGGTCTAGATATCTTCGAGCGTGTCGCGACCGAGGCCTCG
AAACTTGCCGCTTACAACAAGAAGTCCACCATCTCTTCACGGGAGATCCA
GACCTCGTAAGTCCTCTGTCGATCAAGATAGTAGCAATTCGCTAACACCT
CTCTAGTGTGAGGCTCATCCTTCCCGGTGAATTGGCGAAGCACGCGGTGT
CGGAAGGCACCAAGGCTGTCACGAAGTACTCGTCGTCTGCCAAATAAGCA
TTTTCTTTCCTTTTTTCTTTCTGCAGGATTGTTCTTTTGCTACCTCGTCA
TCTGTTACGGTTTTGAGGTGGTGGGTTACAGGGTGTTCGCGGGATTCTAA
TGTGTCATGGGATGGCTTTATTTCTTTTTTTCCCCTTGGGCCAAATGTTT
TATGGTTGTTTTTTTTTTTTGTGACGTGAATGCGGTGTAACATAACTCGG
ATGTGGGGTTGGTTGCGCGGGTTTACCTTCCCCAGCAGAATTCGAATATC
AAATTGCCTAGTTGCATGTCTATAAGATCAAAACG
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Coding sequence (CDS) from alignment at ch2:1198640..1199774-

>KJC3_001934-T2 ID=KJC3_001934-T2|Name=KJC3_001934-T2|organism=Aspergillus niger KJC3|type=CDS|length=1704bp|location=Sequence derived from alignment at ch2:1198640..1199774- (Aspergillus niger KJC3)
TGTGAGGCTCATCCTTCCCGGTGAATTGGCGAAGCACGCGGTGTCGGAAG
GCACCAAGGCTGTCACGAAGTACTCGTCGTCTGCCAAATAAATATCTTCG
AGCGTGTCGCGACCGAGGCCTCGAAACTTGCCGCTTACAACAAGAAGTCC
ACCATCTCTTCACGGGAGATCCAGACCTCTCTTGAAGCAGGTCCACCCTG
ATACCGGTATCTCGACTCGTGCTATGTCCATCCTGAACTCCTTTGTCAAT
GATGCCTCCCAAAGCCGCTGAGAAGAAGCCCAGCACCGGTGGCAAGGCCC
CGGCAGGCGGCAAGGCTCCCGCTGAGAAGAAGGAAGCCGGCAAGAAGACT
GCTGCCGCTGCCTCCGGCGACAAGAAGAAGCGTGGAAAGACCAGGAAGGA
GACCTACTCGTCTTACATCTACAAGGTGTGAGGCTCATCCTTCCCGGTGA
ATTGGCGAAGCACGCGGTGTCGGAAGGCACCAAGGCTGTCACGAAGTACT
CGTCGTCTGCCAAATAAATATCTTCGAGCGTGTCGCGACCGAGGCCTCGA
AACTTGCCGCTTACAACAAGAAGTCCACCATCTCTTCACGGGAGATCCAG
ACCTCTCTTGAAGCAGGTCCACCCTGATACCGGTATCTCGACTCGTGCTA
TGTCCATCCTGAACTCCTTTGTCAATGATGCCTCCCAAAGCCGCTGAGAA
GAAGCCCAGCACCGGTGGCAAGGCCCCGGCAGGCGGCAAGGCTCCCGCTG
AGAAGAAGGAAGCCGGCAAGAAGACTGCTGCCGCTGCCTCCGGCGACAAG
AAGAAGCGTGGAAAGACCAGGAAGGAGACCTACTCGTCTTACATCTACAA
GGTGTGAGGCTCATCCTTCCCGGTGAATTGGCGAAGCACGCGGTGTCGGA
AGGCACCAAGGCTGTCACGAAGTACTCGTCGTCTGCCAAATAAATATCTT
CGAGCGTGTCGCGACCGAGGCCTCGAAACTTGCCGCTTACAACAAGAAGT
CCACCATCTCTTCACGGGAGATCCAGACCTCTCTTGAAGCAGGTCCACCC
TGATACCGGTATCTCGACTCGTGCTATGTCCATCCTGAACTCCTTTGTCA
ATGATGCCTCCCAAAGCCGCTGAGAAGAAGCCCAGCACCGGTGGCAAGGC
CCCGGCAGGCGGCAAGGCTCCCGCTGAGAAGAAGGAAGCCGGCAAGAAGA
CTGCTGCCGCTGCCTCCGGCGACAAGAAGAAGCGTGGAAAGACCAGGAAG
GAGACCTACTCGTCTTACATCTACAAGGTGTGAGGCTCATCCTTCCCGGT
GAATTGGCGAAGCACGCGGTGTCGGAAGGCACCAAGGCTGTCACGAAGTA
CTCGTCGTCTGCCAAATAAATATCTTCGAGCGTGTCGCGACCGAGGCCTC
GAAACTTGCCGCTTACAACAAGAAGTCCACCATCTCTTCACGGGAGATCC
AGACCTCTCTTGAAGCAGGTCCACCCTGATACCGGTATCTCGACTCGTGC
TATGTCCATCCTGAACTCCTTTGTCAATGATGCCTCCCAAAGCCGCTGAG
AAGAAGCCCAGCACCGGTGGCAAGGCCCCGGCAGGCGGCAAGGCTCCCGC
TGAGAAGAAGGAAGCCGGCAAGAAGACTGCTGCCGCTGCCTCCGGCGACA
AGAAGAAGCGTGGAAAGACCAGGAAGGAGACCTACTCGTCTTACATCTAC
AAGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HTB1_1KJC3_001934Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001934-T2KJC3_001934-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001934-T2.cdsKJC3_001934-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001934-T2.utr3p1KJC3_001934-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001934-T2.exon5KJC3_001934-T2.exon5Aspergillus niger KJC3exon
KJC3_001934-T2.exon4KJC3_001934-T2.exon4Aspergillus niger KJC3exon
KJC3_001934-T2.exon3KJC3_001934-T2.exon3Aspergillus niger KJC3exon
KJC3_001934-T2.exon2KJC3_001934-T2.exon2Aspergillus niger KJC3exon
KJC3_001934-T2.exon1KJC3_001934-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001934-T2.utr5p2KJC3_001934-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_001934-T2.utr5p1KJC3_001934-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR000558
DBxrefPFAM:PF00125
Product variant 2
Producthistone H2B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1198640..1199774 -
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