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KJC3_001935-T1, KJC3_001935-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001935-T1
Unique NameKJC3_001935-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1200031..1200863+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001935-T1 ID=KJC3_001935-T1|Name=KJC3_001935-T1|organism=Aspergillus niger KJC3|type=mRNA|length=833bp|location=Sequence derived from alignment at ch2:1200031..1200863+ (Aspergillus niger KJC3)
GCCGTCAACCCTTTAGCACCATATCACGCTTATCGCCATCGTCACTTGTT
AACTACAACTCCCTAATAAATTAAACACCTTCAAAAGGAAAAAAAAAAAA
ACCTCACATACCATCCAACAAAATGACTGGAGGCAAATCTGGAGGCAAGG
CCAGCGGCAGCAAGAACGCCCAATCGTATGCCACCCGTTCATCTCGAGCG
TCATCTCGAGATATTCGTTAAATATACTGACCCGGTCACAGCCGTTCGTC
CAAGGCCGGTCTCGCCTTTCCCGTTGGACGTGTTCATCGTCTCCTCCGCA
AGGGCAACTACGCTCAGCGTGTTGGTGCCGGTTAGTGATACTCGTTTTAA
CCCAAAAGGCAACTCTAACCTCATGATAATAGGTGCTCCCGTTTACCTCG
CTGCCGTTCTTGAGTATCTCGCCGCCGAAATTCTTGAATTGGCTGGCAAC
GCTGCTCGCGATAACAAGAAGACCCGTATCATTCCCCGTCACCTTCAGCT
CGCCATCCGCAACGATGAGGAACTGAACAAGCTCCTGGGTCATGTCACCA
TTGCCCAGGGTGGTGTCCTCCCCAACATCCACCAGAGTAAGTATTGGCTC
CATTTGTTAATTCAGCATGTGGTACTGACAATACATAGACCTTCTGCCCA
AGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAAGCCAGGAGCTGTAAACA
ATTTCTTTCTAATTTGGGTTCTCTGATTCGGCGCGGTTTGGTTCTCTTAT
TGATGTGATAACGGGGTTCTGGTCGGAACGTTTATGGCTCTGCGATTTCT
TTTTTTCTAGTTTCCACAGTTTATGGTTGTACA
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Coding sequence (CDS) from alignment at ch2:1200031..1200863+

>KJC3_001935-T1 ID=KJC3_001935-T1|Name=KJC3_001935-T1|organism=Aspergillus niger KJC3|type=CDS|length=1620bp|location=Sequence derived from alignment at ch2:1200031..1200863+ (Aspergillus niger KJC3)
ATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGAACGCCCA
ATCCCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCGTTGGACGTGTTCATC
GTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTTGGTGCCGGTGCTCCC
GTTTACCTCGCTGCCGTTCTTGAGTATCTCGCCGCCGAAATTCTTGAATT
GGCTGGCAACGCTGCTCGCGATAACAAGAAGACCCGTATCATTCCCCGTC
ACCTTCAGCTCGCCATCCGCAACGATGAGGAACTGAACAAGCTCCTGGGT
CATGTCACCATTGCCCAGGGTGGTGTCCTCCCCAACATCCACCAGAACCT
TCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAAGCCAGGAGC
TGTAAATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGAAC
GCCCAATCCCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCGTTGGACGTGT
TCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTTGGTGCCGGTG
CTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGCCGCCGAAATTCTT
GAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGACCCGTATCATTCC
CCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAACTGAACAAGCTCC
TGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCCCAACATCCACCAG
AACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAAGCCA
GGAGCTGTAAATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCA
AGAACGCCCAATCCCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCGTTGGA
CGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTTGGTGC
CGGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGCCGCCGAAA
TTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGACCCGTATC
ATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAACTGAACAA
GCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCCCAACATCC
ACCAGAACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGA
AGCCAGGAGCTGTAAATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGG
CAGCAAGAACGCCCAATCCCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCG
TTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTT
GGTGCCGGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGCCGC
CGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGACCC
GTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAACTG
AACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCCCAA
CATCCACCAGAACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCC
CGGGAAGCCAGGAGCTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001935KJC3_001935Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001935-T1KJC3_001935-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001935-T1.utr5p1KJC3_001935-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001935-T1.exon1KJC3_001935-T1.exon1Aspergillus niger KJC3exon
KJC3_001935-T1.exon2KJC3_001935-T1.exon2Aspergillus niger KJC3exon
KJC3_001935-T1.exon3KJC3_001935-T1.exon3Aspergillus niger KJC3exon
KJC3_001935-T1.exon4KJC3_001935-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001935-T1.cdsKJC3_001935-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001935-T1.utr3p1KJC3_001935-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR032458
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR032454
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR002119
DBxrefPFAM:PF16211
DBxrefPFAM:PF00125
DBxrefPFAM:PF00808
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1200031..1200863 +
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