You are here

Home

KJC3_001940-T1, KJC3_001940-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001940-T1
Unique NameKJC3_001940-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1207634..1209268-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001940-T1 ID=KJC3_001940-T1|Name=KJC3_001940-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1635bp|location=Sequence derived from alignment at ch2:1207634..1209268- (Aspergillus niger KJC3)
ATGCACTTGCCTCTAACATCTCTTACGGTCTTTCTGGCCTTTCTTTCCGC
TGGCCATGGCCTGCAGTCTTCTCAGATCCCCTCTGACACCCCACTATCAT
CGTTGATCGCTTCTGCAAAATCCCACCTTGCGGGTGGTTCCCCCCGCGAG
GCCTTGGTGTATTTTGATGCGGCTGTGTCCAGGGATCCCACAAATTATCT
TACACTCTTTCAGAGAGGTGCTACCCAGCTGAGCCTGGGTAAGAGCTCAC
TGGCTCTTGAAGACTTCGACCGGGTTCTTCAACTGAAGCCAGACTTCGAA
AGCGCTCTTCTACAGCGGGCACGACTGAAGGCCAGCTCTGCTGACTGGGC
AGGTGCGTTGGGTGATCTTGATAAAGCTGGTAAGAGGTCCACACCAGAGT
ATCAAGAACTCCGGGAATCGCGTGATGCTGCGTCTGCCGCGCTGGAAGCG
GAAAGTCGCGGAGCCTGGGATGTCTGTGTAAGCCAGGCGAGTATAGCTTT
GGCCAAGGCAACGATGTCTTTAAGCCTGCGGCGGGCTCGGGCACATTGTC
GCTTTGAGACGGGTGAAACAGAACAGGGAATCAGCGATCTTCTTCACGTG
CTACAGATTCACCCGAGCTCCTTGGAGCCCTATCTACAGATATCGTCGAC
ACTTTTCTATGCCTTGGGAGACACGGACCGCGGTATTTCCCAAGTCCGCA
AATGTCTACATTCTGACCCTGATTCGAAACCGTGCAATCGCCTTTACAGA
AGGGAGAGGCAGCTTGTAAAACAGTTGCAAAAATTGGAGGAAGCTGTGAA
TGCGCGAAAACACAACAACGCCATTAATATACTGGTAGGGGTCAGTGGTG
AAAGCGGTCTCCTCGATGACGTGCAGAAGGATGCTGCACAGGCAAAGGAG
GATGGTCTTATTCACCCAAAAGCCCCGAGCAGCCTTTATGCCTCACTCGT
CGAACGGACCTGCGAGGTTTTCCGGGAGGTTCGTTCACTCAACCCCTACT
AAAGATCCTCTTTTCGCGGTACATTACTAAATCTTGCATCACTTCAGGCG
CAAATGCCCAAACGGGCTAGTCCATACTGCTCGGAGGCTTTGACTTTCGA
TCCTAATTCTTTACCGGCGCTCCTCCTCGAGAGTCAGCATGCTATTGACG
AGGATCGGTTTGATGATGCTATACGGTTGCTAAACCAAGCCAAGGAACAT
CATTCCAATTCGAGGGAAGTTCAGGCCCTGTTGCAGAAGGCCCAAGTTCT
ACAGAAACGTTCCAAGCAGAAAGACTACTACAAGGTTTTGGGTGTGAGCC
GCGATGCGGACGAGAGGACTATCAAGCGTGCTTATCGGCAGCTTACGAAA
CAGCACCACCCTGATAAGGCCATTTCCCAGGGTGTTACCAAGGAGGAGGC
TGAGAAGAAGATGGCCTCAATTAATGAAGCTTACGAGGTACTTTCTGATC
CTGAATTGCGATCCCGGTACGACAACGGCGATGACCCCAATGACCCAGAG
TCACAAAGGGGCAGGCCATTTCAAGGGAGTCCGTTTGGACCAGGCGGACA
ATTTTTCTTCCAGCAGGGCGGCGGTCCGCAATTCAAGTTCTCGGGTCAGG
GCTTCAACTTTCCCGGCGGTTTCCCTTTCCGCTGA
back to top

Coding sequence (CDS) from alignment at ch2:1207634..1209268-

>KJC3_001940-T1 ID=KJC3_001940-T1|Name=KJC3_001940-T1|organism=Aspergillus niger KJC3|type=CDS|length=3132bp|location=Sequence derived from alignment at ch2:1207634..1209268- (Aspergillus niger KJC3)
GCGCAAATGCCCAAACGGGCTAGTCCATACTGCTCGGAGGCTTTGACTTT
CGATCCTAATTCTTTACCGGCGCTCCTCCTCGAGAGTCAGCATGCTATTG
ACGAGGATCGGTTTGATGATGCTATACGGTTGCTAAACCAAGCCAAGGAA
CATCATTCCAATTCGAGGGAAGTTCAGGCCCTGTTGCAGAAGGCCCAAGT
TCTACAGAAACGTTCCAAGCAGAAAGACTACTACAAGGTTTTGGGTGTGA
GCCGCGATGCGGACGAGAGGACTATCAAGCGTGCTTATCGGCAGCTTACG
AAACAGCACCACCCTGATAAGGCCATTTCCCAGGGTGTTACCAAGGAGGA
GGCTGAGAAGAAGATGGCCTCAATTAATGAAGCTTACGAGGTACTTTCTG
ATCCTGAATTGCGATCCCGGTACGACAACGGCGATGACCCCAATGACCCA
GAGTCACAAAGGGGCAGGCCATTTCAAGGGAGTCCGTTTGGACCAGGCGG
ACAATTTTTCTTCCAGCAGGGCGGCGGTCCGCAATTCAAGTTCTCGGGTC
AGGGCTTCAACTTTCCCGGCGGTTTCCCTTTCCGCTGAATGCACTTGCCT
CTAACATCTCTTACGGTCTTTCTGGCCTTTCTTTCCGCTGGCCATGGCCT
GCAGTCTTCTCAGATCCCCTCTGACACCCCACTATCATCGTTGATCGCTT
CTGCAAAATCCCACCTTGCGGGTGGTTCCCCCCGCGAGGCCTTGGTGTAT
TTTGATGCGGCTGTGTCCAGGGATCCCACAAATTATCTTACACTCTTTCA
GAGAGGTGCTACCCAGCTGAGCCTGGGTAAGAGCTCACTGGCTCTTGAAG
ACTTCGACCGGGTTCTTCAACTGAAGCCAGACTTCGAAAGCGCTCTTCTA
CAGCGGGCACGACTGAAGGCCAGCTCTGCTGACTGGGCAGGTGCGTTGGG
TGATCTTGATAAAGCTGGTAAGAGGTCCACACCAGAGTATCAAGAACTCC
GGGAATCGCGTGATGCTGCGTCTGCCGCGCTGGAAGCGGAAAGTCGCGGA
GCCTGGGATGTCTGTGTAAGCCAGGCGAGTATAGCTTTGGCCAAGGCAAC
GATGTCTTTAAGCCTGCGGCGGGCTCGGGCACATTGTCGCTTTGAGACGG
GTGAAACAGAACAGGGAATCAGCGATCTTCTTCACGTGCTACAGATTCAC
CCGAGCTCCTTGGAGCCCTATCTACAGATATCGTCGACACTTTTCTATGC
CTTGGGAGACACGGACCGCGGTATTTCCCAAGTCCGCAAATGTCTACATT
CTGACCCTGATTCGAAACCGTGCAATCGCCTTTACAGAAGGGAGAGGCAG
CTTGTAAAACAGTTGCAAAAATTGGAGGAAGCTGTGAATGCGCGAAAACA
CAACAACGCCATTAATATACTGGTAGGGGTCAGTGGTGAAAGCGGTCTCC
TCGATGACGTGCAGAAGGATGCTGCACAGGCAAAGGAGGATGGTCTTATT
CACCCAAAAGCCCCGAGCAGCCTTTATGCCTCACTCGTCGAACGGACCTG
CGAGGTTTTCCGGGAGGCGCAAATGCCCAAACGGGCTAGTCCATACTGCT
CGGAGGCTTTGACTTTCGATCCTAATTCTTTACCGGCGCTCCTCCTCGAG
AGTCAGCATGCTATTGACGAGGATCGGTTTGATGATGCTATACGGTTGCT
AAACCAAGCCAAGGAACATCATTCCAATTCGAGGGAAGTTCAGGCCCTGT
TGCAGAAGGCCCAAGTTCTACAGAAACGTTCCAAGCAGAAAGACTACTAC
AAGGTTTTGGGTGTGAGCCGCGATGCGGACGAGAGGACTATCAAGCGTGC
TTATCGGCAGCTTACGAAACAGCACCACCCTGATAAGGCCATTTCCCAGG
GTGTTACCAAGGAGGAGGCTGAGAAGAAGATGGCCTCAATTAATGAAGCT
TACGAGGTACTTTCTGATCCTGAATTGCGATCCCGGTACGACAACGGCGA
TGACCCCAATGACCCAGAGTCACAAAGGGGCAGGCCATTTCAAGGGAGTC
CGTTTGGACCAGGCGGACAATTTTTCTTCCAGCAGGGCGGCGGTCCGCAA
TTCAAGTTCTCGGGTCAGGGCTTCAACTTTCCCGGCGGTTTCCCTTTCCG
CTGAATGCACTTGCCTCTAACATCTCTTACGGTCTTTCTGGCCTTTCTTT
CCGCTGGCCATGGCCTGCAGTCTTCTCAGATCCCCTCTGACACCCCACTA
TCATCGTTGATCGCTTCTGCAAAATCCCACCTTGCGGGTGGTTCCCCCCG
CGAGGCCTTGGTGTATTTTGATGCGGCTGTGTCCAGGGATCCCACAAATT
ATCTTACACTCTTTCAGAGAGGTGCTACCCAGCTGAGCCTGGGTAAGAGC
TCACTGGCTCTTGAAGACTTCGACCGGGTTCTTCAACTGAAGCCAGACTT
CGAAAGCGCTCTTCTACAGCGGGCACGACTGAAGGCCAGCTCTGCTGACT
GGGCAGGTGCGTTGGGTGATCTTGATAAAGCTGGTAAGAGGTCCACACCA
GAGTATCAAGAACTCCGGGAATCGCGTGATGCTGCGTCTGCCGCGCTGGA
AGCGGAAAGTCGCGGAGCCTGGGATGTCTGTGTAAGCCAGGCGAGTATAG
CTTTGGCCAAGGCAACGATGTCTTTAAGCCTGCGGCGGGCTCGGGCACAT
TGTCGCTTTGAGACGGGTGAAACAGAACAGGGAATCAGCGATCTTCTTCA
CGTGCTACAGATTCACCCGAGCTCCTTGGAGCCCTATCTACAGATATCGT
CGACACTTTTCTATGCCTTGGGAGACACGGACCGCGGTATTTCCCAAGTC
CGCAAATGTCTACATTCTGACCCTGATTCGAAACCGTGCAATCGCCTTTA
CAGAAGGGAGAGGCAGCTTGTAAAACAGTTGCAAAAATTGGAGGAAGCTG
TGAATGCGCGAAAACACAACAACGCCATTAATATACTGGTAGGGGTCAGT
GGTGAAAGCGGTCTCCTCGATGACGTGCAGAAGGATGCTGCACAGGCAAA
GGAGGATGGTCTTATTCACCCAAAAGCCCCGAGCAGCCTTTATGCCTCAC
TCGTCGAACGGACCTGCGAGGTTTTCCGGGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001940KJC3_001940Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001940-T1KJC3_001940-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001940-T1.cdsKJC3_001940-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001940-T1.exon2KJC3_001940-T1.exon2Aspergillus niger KJC3exon
KJC3_001940-T1.exon1KJC3_001940-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-20)
DBxrefInterPro:IPR013026
DBxrefInterPro:IPR036869
DBxrefInterPro:IPR011990
DBxrefInterPro:IPR019734
DBxrefInterPro:IPR001623
DBxrefPFAM:PF00226
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1207634..1209268 -
Powered by Drupal