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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1212951..1216863- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001943-T1 ID=KJC3_001943-T1|Name=KJC3_001943-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3913bp|location=Sequence derived from alignment at ch2:1212951..1216863- (Aspergillus niger KJC3) TCACCACTCCCACCACCACATTGAAGTTTTCCAACCTCTTTCCCCTTCAC
ACCCTATGATAAGCCATTCGCCTTTCACTCAGTGCGAGTCAAATCCGTTA
AACAAATCCTCCTAACCCCCTCCAACACCTAATCTTAGGATCGGCTACTC
ATACATCCGAATTGTTCGAATCGCAGCCCACATCCGTGGCACCCAGTTCT
GTCTTCCCGAGTTTCGTTCCTGGCATCCAACCAAACGGCCCGCACACAGG
CACTTCACATCAAGTCGCTGTCAAGTTTCTAGTTGACGACTCAATCATCA
GAGACCCCTTACACACATCCTTGTCTCTTTCGTCCCTCACTATATCTCTT
TCCCGTCCTGATTCGGCTCCGAGCAGCCTCTTTCATTGGGAACGGAAGCA
CAATCTTTGCATCCGGCCAACTCATTCACCTCACCACCTTGTGTTGTCCA
CCCGACTTCCGGTCTTCTAGAAGATAGGATTCCCCAACATTAAGTATTTT
AACCTATATCATTTTGCTCATAATACCACACAGGCTAATGTATTCCAGAC
TTGGATTGAGCTAGTGATCATTTCTGTCTGTTCCATCATCGCATTTGAGT
GTTCCGCAACAAAACGGTTGGAGGAAGAACAAGCAACCTACCCCACCTCA
ATCCCAATATTACCTTTTTTTACACCTGATCACCATGACCGACGCCTTAG
CCTCTCAGCTGAATAACACTACTTTAGGGTACATTCACTGTCGCACGCTG
GTTGATCCATATGATGAGGCTAACTTGAACACTTCGAAGGGATGCGAGCT
CAGACGCGAAGTGGAAGGAGCAATTGAATGTCCCTGCCAAAGATGCAAGA
CCACAAACTGAGGTTCGTCTGACTTATGAACAAATGGTATAAATGTCGAT
AGCGATCTAATGCGGCTTAGGATGTGACTGCTACGAAAGGCTTGGAATTC
GAAGACTTCTATATCAAACGCGAACTGATGATGGGTATATTCGAAGCTGG
GTTCGAAAAGCCTTCTCCAATTCAGGAAGAGACGATACCAGTTGCTCTTA
CAGGCAGGGATATCTTGGCGCGAGCCAAGAATGGCACAGGAAAAACAGCA
GCTTTCGTTATCCCTACCTTGGAGCGCATCAATCCTAAAAGCACCAAGAC
ACAAGCCCTTATCCTTGTTCCTACGAGAGAGCTGGCGCTCCAAACGTCAC
ATGTCTGCAAAACCTTGGGAAAGCATCTTGGTATCAATGTCATGGTCACC
ACAGGAGGTACTGGCTTGATGGATGACATCATTCGGCTGAACGACGCAGT
CCATATTCTCGTTGGGACCCCAGGAAGAGTCCTGGACCTGGCCAGCAAAG
GGGTTGCTGACCTTTCCGAGTGTCCTACCTTTGTTATGGACGAGGCTGAT
AAATTGCTGTCACCTGAATTCACGCCAGTCATCGAGCAACTACTATCATT
CCATCCTAAAGACCGCCAGGTTATGCTTTTCAGCGCCACCTTTCCACTTA
TTGTGAAGTCATTCAAGGTATGCTTCGTACACAAAGATATCGCATTTCTC
CTCGTGGGTGCTGATATTTTTAGGACAAACACATGCGCAATCCTTACGAG
ATCAATCTCATGGATGAGCTCACTCTCCGCGGTATTACGCAGTATTATGC
TTTTGTTGAGGAAAAGCAGAAGGTCCACTGCTTGAACACACTCTTCTCCA
AGTTACAAATCAATCAATCTATAATCTTCTGCAATTCTACTAACCGAGTC
GAGTTGCTCGCGAAGAAGATAACGGAATTGGGTTATTCTTGCTTCTATTC
CCATGCCAGAATGCTTCAGCAGCATCGCAACCGGGTGTTCCACGATTTCA
GGAATGGCGTTTGCCGGAACCTTGTTTGCTCGGATTTGTTAACTCGAGGT
ATTGATATTCAAGCCGTCAATGTTGTCATAAATTTTGATTTTCCGAAGAA
CGCCGAGACTTATCTGCACCGAATTGGTCGCTCTGGTCGCTTTGGACATC
TTGGTCTTGCTATCAACCTTATCAATTGGGAAGACCGGTTCAATTTATAT
AAGATTGAGCAGGAACTTGGAACTGAGATCCAGCCGATTCCGCAAAACAT
CGACAAGAAGCTTTATGTCTACGACTCACCGGACACAATTCCACGCCCTA
TTGCCAACCCATCCCAGCCTCAGATTACTGCTCAAGCCGCGAATGCAAAC
ATTGGTGAGCGTCGTCACAATCACCATATGAATGGCGGGCAGTACCAGTA
CGGTAGGGGCCGGGGCTCTTATCGCGGAGGTCGTGGACAAGGCCAGCGTC
GCAATATGCAGAACGAAACCAAGTTTGGCACTCAAGGACAGTCAAGCGGC
AAGTCCCACCCGACGCAAGTGTCATAGACAGTCATAGGGGCATGAGCTAC
TCCGTATTTTATTGTTCCACTTTCTACTCATATCTTGCACGTTTCCTTGT
CTTTCTATCGTATTCCAAGTTCATTGTTCTGTTCGCCTTCTCTTTTCCTT
ACCCCCACCCCCCCCCCCCCCTCTTTCAACCTCTCCCGGTCGTTCATTCG
ATTGGAGAAGCCAGATTACAGGTGACTACGGTAGTCTGTTTCAAGCACAT
TTTACAAATGCATCCTTTCTGTCATCGTTGCTGCACTCACTTACCCAATA
TCATATCAACTATGATCTATGATGACGTTTGAAGAACTGTATTATAACGC
ATGCTCTCCCTCTTCTCTCCGTTCCGTGTACCTCTTCGGCCGCCTTACTT
CGCGCTTCCTACCATCTCATTCTATACCCTACTCGACTCTGTTCTCCAGT
TCGCCGCGTCAGAACATGATGTACCTGCATTAGACGGTATGCACTTGGTA
CGGTGAGCACCATTATTTGCCTTTCGGCTTCCTTCCATGTACATAATTTC
TTCTGCTCCACACCAGATGATTCGATTTAGGGTTTCGGGGCGTTTCCGGG
CTTGACTTCCGTCCATTCCTTCTTTTGGCGTTTGAAGGTCTCTTTTAACT
GACAGGTGGGTATTTACTGATCAATACCGATAGCTGCATGGCTATTCCGT
CATTGCATATGCGTTATACGACTCCGAATCTTTGGGGTGAACGATGTGCC
GAGTTGAAATGTCTACTCCCGACTTGCCTATGAACCTTGGCTCAGTCATG
ATTACAATGGTCTGCGCGATTTGTGGTCTGCGATCTGCATTCGGCGCACT
GCGTTATTGGAGTTTGTTGTTATTTTGTGGCTTTATAAGTGGGCCATTAT
TGGACCGAGTGATCTGGCCATTTTCTCACGCATCACATCCTCTCGACCAG
TCACACCTAACAGTACTTCCACCGCCATAAACATTGCAGGTGGCATTTTT
TGCCATCTGCTGATGGACGCCTTTGTGGATTACAGCAGAGGCTCGACGTC
TGTTTGGTCTGAATTTGGTCTGAAGACACATACCCTGCTTTGTGTTCGCC
GACTAGGAACTCAATCTGGCATTTCAAATAGCCTCTGACTTCGGCGGCGC
GATTGTGGATGATAACTGGGAAAGGGAATAGAAGGAGGCCGGAGAGTTTG
TGCATGGATGCTATGTTCAAAGGTGAAACGGGTGGGGATTTCACGAGTTG
AAGGGGGAATATGACAATCCAGAAGGGAAAGAAAAAAAAAGAAAAAAAAA
AAAAAAGAAAGAAAAGAAAACGAAATGAAGGAGAGAATGGCAGAAGCGAA
GGACAAAATAAAAAAGAGAAAGAAAGAAAAAAAAAAAAAGTATTAAAATG
GATGTGAAAAGCCCAGGGAGTGATTGATGCCGCCGCGTTCTCTCAAGTTT
CACAGCTTACAGTCTTAAGTATGTAGCACCTAGCGGAATGGAATCTTTAA
TCCCTGGGAAACAACCAGAATCATCTCAATAAATGTGAATGTATACCCCA
ATTTACGATATCG back to topCoding sequence (CDS) from alignment at ch2:1212951..1216863- >KJC3_001943-T1 ID=KJC3_001943-T1|Name=KJC3_001943-T1|organism=Aspergillus niger KJC3|type=CDS|length=6072bp|location=Sequence derived from alignment at ch2:1212951..1216863- (Aspergillus niger KJC3) GACAAACACATGCGCAATCCTTACGAGATCAATCTCATGGATGAGCTCAC TCTCCGCGGTATTACGCAGTATTATGCTTTTGTTGAGGAAAAGCAGAAGG TCCACTGCTTGAACACACTCTTCTCCAAGTTACAAATCAATCAATCTATA ATCTTCTGCAATTCTACTAACCGAGTCGAGTTGCTCGCGAAGAAGATAAC GGAATTGGGTTATTCTTGCTTCTATTCCCATGCCAGAATGCTTCAGCAGC ATCGCAACCGGGTGTTCCACGATTTCAGGAATGGCGTTTGCCGGAACCTT GTTTGCTCGGATTTGTTAACTCGAGGTATTGATATTCAAGCCGTCAATGT TGTCATAAATTTTGATTTTCCGAAGAACGCCGAGACTTATCTGCACCGAA TTGGTCGCTCTGGTCGCTTTGGACATCTTGGTCTTGCTATCAACCTTATC AATTGGGAAGACCGGTTCAATTTATATAAGATTGAGCAGGAACTTGGAAC TGAGATCCAGCCGATTCCGCAAAACATCGACAAGAAGCTTTATGTCTACG ACTCACCGGACACAATTCCACGCCCTATTGCCAACCCATCCCAGCCTCAG ATTACTGCTCAAGCCGCGAATGCAAACATTGGTGAGCGTCGTCACAATCA CCATATGAATGGCGGGCAGTACCAGTACGGTAGGGGCCGGGGCTCTTATC GCGGAGGTCGTGGACAAGGCCAGCGTCGCAATATGCAGAACGAAACCAAG TTTGGCACTCAAGGACAGTCAAGCGGCAAGTCCCACCCGACGCAAGTGTC ATAGGATGTGACTGCTACGAAAGGCTTGGAATTCGAAGACTTCTATATCA AACGCGAACTGATGATGGGTATATTCGAAGCTGGGTTCGAAAAGCCTTCT CCAATTCAGGAAGAGACGATACCAGTTGCTCTTACAGGCAGGGATATCTT GGCGCGAGCCAAGAATGGCACAGGAAAAACAGCAGCTTTCGTTATCCCTA CCTTGGAGCGCATCAATCCTAAAAGCACCAAGACACAAGCCCTTATCCTT GTTCCTACGAGAGAGCTGGCGCTCCAAACGTCACATGTCTGCAAAACCTT GGGAAAGCATCTTGGTATCAATGTCATGGTCACCACAGGAGGTACTGGCT TGATGGATGACATCATTCGGCTGAACGACGCAGTCCATATTCTCGTTGGG ACCCCAGGAAGAGTCCTGGACCTGGCCAGCAAAGGGGTTGCTGACCTTTC CGAGTGTCCTACCTTTGTTATGGACGAGGCTGATAAATTGCTGTCACCTG AATTCACGCCAGTCATCGAGCAACTACTATCATTCCATCCTAAAGACCGC CAGGTTATGCTTTTCAGCGCCACCTTTCCACTTATTGTGAAGTCATTCAA GGGATGCGAGCTCAGACGCGAAGTGGAAGGAGCAATTGAATGTCCCTGCC AAAGATGCAAGACCACAAACTGAGATGACCGACGCCTTAGCCTCTCAGCT GAATAACACTACTTTAGGGACAAACACATGCGCAATCCTTACGAGATCAA TCTCATGGATGAGCTCACTCTCCGCGGTATTACGCAGTATTATGCTTTTG TTGAGGAAAAGCAGAAGGTCCACTGCTTGAACACACTCTTCTCCAAGTTA CAAATCAATCAATCTATAATCTTCTGCAATTCTACTAACCGAGTCGAGTT GCTCGCGAAGAAGATAACGGAATTGGGTTATTCTTGCTTCTATTCCCATG CCAGAATGCTTCAGCAGCATCGCAACCGGGTGTTCCACGATTTCAGGAAT GGCGTTTGCCGGAACCTTGTTTGCTCGGATTTGTTAACTCGAGGTATTGA TATTCAAGCCGTCAATGTTGTCATAAATTTTGATTTTCCGAAGAACGCCG AGACTTATCTGCACCGAATTGGTCGCTCTGGTCGCTTTGGACATCTTGGT CTTGCTATCAACCTTATCAATTGGGAAGACCGGTTCAATTTATATAAGAT TGAGCAGGAACTTGGAACTGAGATCCAGCCGATTCCGCAAAACATCGACA AGAAGCTTTATGTCTACGACTCACCGGACACAATTCCACGCCCTATTGCC AACCCATCCCAGCCTCAGATTACTGCTCAAGCCGCGAATGCAAACATTGG TGAGCGTCGTCACAATCACCATATGAATGGCGGGCAGTACCAGTACGGTA GGGGCCGGGGCTCTTATCGCGGAGGTCGTGGACAAGGCCAGCGTCGCAAT ATGCAGAACGAAACCAAGTTTGGCACTCAAGGACAGTCAAGCGGCAAGTC CCACCCGACGCAAGTGTCATAGGATGTGACTGCTACGAAAGGCTTGGAAT TCGAAGACTTCTATATCAAACGCGAACTGATGATGGGTATATTCGAAGCT GGGTTCGAAAAGCCTTCTCCAATTCAGGAAGAGACGATACCAGTTGCTCT TACAGGCAGGGATATCTTGGCGCGAGCCAAGAATGGCACAGGAAAAACAG CAGCTTTCGTTATCCCTACCTTGGAGCGCATCAATCCTAAAAGCACCAAG ACACAAGCCCTTATCCTTGTTCCTACGAGAGAGCTGGCGCTCCAAACGTC ACATGTCTGCAAAACCTTGGGAAAGCATCTTGGTATCAATGTCATGGTCA CCACAGGAGGTACTGGCTTGATGGATGACATCATTCGGCTGAACGACGCA GTCCATATTCTCGTTGGGACCCCAGGAAGAGTCCTGGACCTGGCCAGCAA AGGGGTTGCTGACCTTTCCGAGTGTCCTACCTTTGTTATGGACGAGGCTG ATAAATTGCTGTCACCTGAATTCACGCCAGTCATCGAGCAACTACTATCA TTCCATCCTAAAGACCGCCAGGTTATGCTTTTCAGCGCCACCTTTCCACT TATTGTGAAGTCATTCAAGGGATGCGAGCTCAGACGCGAAGTGGAAGGAG CAATTGAATGTCCCTGCCAAAGATGCAAGACCACAAACTGAGATGACCGA CGCCTTAGCCTCTCAGCTGAATAACACTACTTTAGGGACAAACACATGCG CAATCCTTACGAGATCAATCTCATGGATGAGCTCACTCTCCGCGGTATTA CGCAGTATTATGCTTTTGTTGAGGAAAAGCAGAAGGTCCACTGCTTGAAC ACACTCTTCTCCAAGTTACAAATCAATCAATCTATAATCTTCTGCAATTC TACTAACCGAGTCGAGTTGCTCGCGAAGAAGATAACGGAATTGGGTTATT CTTGCTTCTATTCCCATGCCAGAATGCTTCAGCAGCATCGCAACCGGGTG TTCCACGATTTCAGGAATGGCGTTTGCCGGAACCTTGTTTGCTCGGATTT GTTAACTCGAGGTATTGATATTCAAGCCGTCAATGTTGTCATAAATTTTG ATTTTCCGAAGAACGCCGAGACTTATCTGCACCGAATTGGTCGCTCTGGT CGCTTTGGACATCTTGGTCTTGCTATCAACCTTATCAATTGGGAAGACCG GTTCAATTTATATAAGATTGAGCAGGAACTTGGAACTGAGATCCAGCCGA TTCCGCAAAACATCGACAAGAAGCTTTATGTCTACGACTCACCGGACACA ATTCCACGCCCTATTGCCAACCCATCCCAGCCTCAGATTACTGCTCAAGC CGCGAATGCAAACATTGGTGAGCGTCGTCACAATCACCATATGAATGGCG GGCAGTACCAGTACGGTAGGGGCCGGGGCTCTTATCGCGGAGGTCGTGGA CAAGGCCAGCGTCGCAATATGCAGAACGAAACCAAGTTTGGCACTCAAGG ACAGTCAAGCGGCAAGTCCCACCCGACGCAAGTGTCATAGGATGTGACTG CTACGAAAGGCTTGGAATTCGAAGACTTCTATATCAAACGCGAACTGATG ATGGGTATATTCGAAGCTGGGTTCGAAAAGCCTTCTCCAATTCAGGAAGA GACGATACCAGTTGCTCTTACAGGCAGGGATATCTTGGCGCGAGCCAAGA ATGGCACAGGAAAAACAGCAGCTTTCGTTATCCCTACCTTGGAGCGCATC AATCCTAAAAGCACCAAGACACAAGCCCTTATCCTTGTTCCTACGAGAGA GCTGGCGCTCCAAACGTCACATGTCTGCAAAACCTTGGGAAAGCATCTTG GTATCAATGTCATGGTCACCACAGGAGGTACTGGCTTGATGGATGACATC ATTCGGCTGAACGACGCAGTCCATATTCTCGTTGGGACCCCAGGAAGAGT CCTGGACCTGGCCAGCAAAGGGGTTGCTGACCTTTCCGAGTGTCCTACCT TTGTTATGGACGAGGCTGATAAATTGCTGTCACCTGAATTCACGCCAGTC ATCGAGCAACTACTATCATTCCATCCTAAAGACCGCCAGGTTATGCTTTT CAGCGCCACCTTTCCACTTATTGTGAAGTCATTCAAGGGATGCGAGCTCA GACGCGAAGTGGAAGGAGCAATTGAATGTCCCTGCCAAAGATGCAAGACC ACAAACTGAGATGACCGACGCCTTAGCCTCTCAGCTGAATAACACTACTT TAGGGACAAACACATGCGCAATCCTTACGAGATCAATCTCATGGATGAGC TCACTCTCCGCGGTATTACGCAGTATTATGCTTTTGTTGAGGAAAAGCAG AAGGTCCACTGCTTGAACACACTCTTCTCCAAGTTACAAATCAATCAATC TATAATCTTCTGCAATTCTACTAACCGAGTCGAGTTGCTCGCGAAGAAGA TAACGGAATTGGGTTATTCTTGCTTCTATTCCCATGCCAGAATGCTTCAG CAGCATCGCAACCGGGTGTTCCACGATTTCAGGAATGGCGTTTGCCGGAA CCTTGTTTGCTCGGATTTGTTAACTCGAGGTATTGATATTCAAGCCGTCA ATGTTGTCATAAATTTTGATTTTCCGAAGAACGCCGAGACTTATCTGCAC CGAATTGGTCGCTCTGGTCGCTTTGGACATCTTGGTCTTGCTATCAACCT TATCAATTGGGAAGACCGGTTCAATTTATATAAGATTGAGCAGGAACTTG GAACTGAGATCCAGCCGATTCCGCAAAACATCGACAAGAAGCTTTATGTC TACGACTCACCGGACACAATTCCACGCCCTATTGCCAACCCATCCCAGCC TCAGATTACTGCTCAAGCCGCGAATGCAAACATTGGTGAGCGTCGTCACA ATCACCATATGAATGGCGGGCAGTACCAGTACGGTAGGGGCCGGGGCTCT TATCGCGGAGGTCGTGGACAAGGCCAGCGTCGCAATATGCAGAACGAAAC CAAGTTTGGCACTCAAGGACAGTCAAGCGGCAAGTCCCACCCGACGCAAG TGTCATAGGATGTGACTGCTACGAAAGGCTTGGAATTCGAAGACTTCTAT ATCAAACGCGAACTGATGATGGGTATATTCGAAGCTGGGTTCGAAAAGCC TTCTCCAATTCAGGAAGAGACGATACCAGTTGCTCTTACAGGCAGGGATA TCTTGGCGCGAGCCAAGAATGGCACAGGAAAAACAGCAGCTTTCGTTATC CCTACCTTGGAGCGCATCAATCCTAAAAGCACCAAGACACAAGCCCTTAT CCTTGTTCCTACGAGAGAGCTGGCGCTCCAAACGTCACATGTCTGCAAAA CCTTGGGAAAGCATCTTGGTATCAATGTCATGGTCACCACAGGAGGTACT GGCTTGATGGATGACATCATTCGGCTGAACGACGCAGTCCATATTCTCGT TGGGACCCCAGGAAGAGTCCTGGACCTGGCCAGCAAAGGGGTTGCTGACC TTTCCGAGTGTCCTACCTTTGTTATGGACGAGGCTGATAAATTGCTGTCA CCTGAATTCACGCCAGTCATCGAGCAACTACTATCATTCCATCCTAAAGA CCGCCAGGTTATGCTTTTCAGCGCCACCTTTCCACTTATTGTGAAGTCAT TCAAGGGATGCGAGCTCAGACGCGAAGTGGAAGGAGCAATTGAATGTCCC TGCCAAAGATGCAAGACCACAAACTGAGATGACCGACGCCTTAGCCTCTC AGCTGAATAACACTACTTTAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_001943-T1.utr3p1 | KJC3_001943-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR027417 |
DBxref | InterPro:IPR014014 |
DBxref | InterPro:IPR000629 |
DBxref | InterPro:IPR011545 |
DBxref | InterPro:IPR014001 |
DBxref | InterPro:IPR001650 |
DBxref | PFAM:PF00271 |
DBxref | PFAM:PF00270 |
Product | DExD/H-box ATP-dependent RNA helicase dhh1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch2 | supercontig | ch2:1212951..1216863 - |
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