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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1251945..1255513+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001955-T1 ID=KJC3_001955-T1|Name=KJC3_001955-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3569bp|location=Sequence derived from alignment at ch2:1251945..1255513+ (Aspergillus niger KJC3)
GATCAGCTCCCGCTGTCGATGTGCTCTACTAACGGGATATCTTGAAATCG
AGACTGACGAGTGGGTTTGGGCCCTGATCTGCGTGCCGTTTCCTGCGTGG
CCGCGGCCGTCTACAGTATGGAACCGGAGCCGTCGCAAGCGCAACCTCAA
CCTGCTCCTGAGGAACCGGTCAAGTCGATCGAGAACGATGGCCAGACCGA
TAGTCAGGCCCCCACTGATGGGATCACAGATGAACAATGGAGGTCAATGA
TGAATGTGGTTTTGGCTATCTATGAATTCAGAGAAGAGGAGTAAGTTCTC
CAATCCCCTTGTCCTGCGGGTTGGACCCGGAGGAGACTCGCGGCGCTGGG
TCGCATTCTGTCCGAGGCTGGATCTTGTCCCCTCAGTTGAGACTGACAAT
CCCTTCTTTCCCACGTATTGCAGTGGCCATGATCCATCAAGATTATTCCA
GCGAAGCGTCAACAAACGCAATGTTCCCGATTATTATGATATTATCAAGG
AGCCCATGGCTCTAAGCATTCTCAAACAAAAGATCAATAAGCGCGAGTAT
AAAAGCTTCTCGGAATTCGTGCGCGACTGTGCCCTAGTATGTTGCATCTC
TCTTGCCCTGTCGCCAACCGGGTTCATAATTAGCTTACGTTAATCCTGTT
CGCTAGATCCCTCACAATGCGCAAACCTACAACCGCCCCAAATCCCAAGC
GTACGAAGATGCGCTCGTGATAAAGGTCTGTAGAAACTCGGGCTCTACCT
TCGGTTATCGATGCGTTCCTGTTCGGTTTCGCTGACTGCAAATTTGAAAA
CAAAAGGATGTCTTCATTGCAGAGTTTCGAAAACTGGTTGATCAAGGGAT
CATCACTGCGGAAGAGGCTGAACTTCCCGATCTTGGAGAAATTCCCGAAG
CCGATCCCCTTCCCGAGGAAGAGGAAGAGGAGGATGAGGATGAGGAAGAC
GAAGAGGATGAGGAAGATTCGGATGATGAGAGCCGACGGAAGAAGAAAAG
GGGCCCTCGCCCGGGTGGTAAACGTGACGGTGGCAAAGATGATGGTCAAA
AGTCGAATGATCCCGAGCTGAGGAAGAAACGTGGCCGACCACCGCGTGTT
GACACTCCGATGGAGGCCAGAATCAAAGCTGTTCTAAAGGGTATTCGGAA
GCTGAAAGGGCCCGGTAGCCAACTCAAGGTGCGACATTTCGAGCGATTGC
CCGACAAGGCTACCTACCCGGACTATTACATGGAAATCAGAGAACCCATT
GCTATCGACATCATCAAGCGGAAGTCAAAGCGGAAGAAGTACAATTCGGT
GGACCATTTCATGAGGGACATGGACCTCATGTTCAACAACGCAAAGGCCT
ACAACCAGCCAGAGAGTCAGATCTATAAGGACGCGGTTGACTTGCAATTA
GAAGCACGGAAACTGGCTGAGCACGAGAAGAAGAAGCCAGACAGTGAGTA
CTTGATGGAGGATGGACGCTTGCCCCTACCGGATGGCATCCTGCACAAGA
GCGAGCTGTGGAAGGTTGGCGACTGGGTACATATTCAGAACCCGAATGAC
GTTACAAAACCCATTGTCGCCCAGATCTACCGCACATGGCAGGATTCTGA
GGGTGAGAAATGGATCAACGCTTGTTGGTACTATCGCCCGGAGCAAACTG
TCCATCACTTCGAGAAGCATTTCTACCCCAATGAAGTGGTCAAAACTGGT
CAGTATCGCGATCACCGGGTGGAAGAGATTGTGGATCGTTGCTTCGTGAT
GTTCTTCACTCGCTACAATCGTGGTCGACCTCGAGGTCTTCCTCCCGATA
AAGATGTCTACGTCTGCGAGGCTCGGTACAATGAGGAGAAGCATAAATTG
AACAAGATCAAAACGTGGGCGAGTTGTCTCCCTGATGAAGTCAGGGAGAA
GGACTACGAGATGGATCTGTTTGATGCCCCCCGAAGGATCAAAAAGATCC
CCAGCCCAATCAAGCATTTGCTGAAGAGCGATGCAAAGGAAACCGACGAC
CTGCCCAAGCCGACGTGGGGAGCCGACAATGCACCTCCTGTCGTCGGTGC
AGTTCATCGCCGTCCTCGAGATGAGAACGTAAACTTCCCCATGCTCCCTC
CCCCCTCTTCTCTACTGCTGGTGATTGGCACCACTGACAGGACCTACGCT
TTACCAGGAATCCCCTCCCCCAGAACCGACCCCGTCACCACCTCCGTCCC
TGCCACCACCGACTTTGCCCCCAGCTCCACCTCGACAGCCATCGATCCCT
CAGTCGTCTGGACGGCCCAGTATAGACAATCAAAGCACCGGCGCGACGGC
TGGAACTGCGGCGGCGGTCCGATCCCCAGCTGCACCTATTCCTCCGGCCC
AGAGCTCACCGGCACCAGTTCCTCCGGTAAATTTCCATCAACCCCAGATT
CCCCCTACCCAGGCTTATCAGCCTGCCTTGCAGAAGCGTGCCAGCGCGTT
TGTCCCTCAAACACCTCACCCGGCTACCTACCAAGCGTCGGCCCTGTCTC
ATCCATACACGGCCGCTCAACAAACACCATATAATCTATATTCTAGCGGC
CGGTTGCCGGTTCCTCCCATGGGAATGTACAATCCCAACGCTCCTCGTCC
GATCGAAGTCTTCCATTTGAGCGATTCCGCGAATGCTGCCATTCCGGCAG
ACATACGTGAACAGTTTCACTGTGATGACCAGGGTCGCGTGCTATTCTTC
TCGAGCCCGCCGCTTGATATAGTCCCATCTGTTCAGCAAAAGCTAGGCCA
TTCACTTAAATATCTGGCTGCCAAAGAGGAGCGAAGAAAGTTGGTGGAGG
CCAAGAAGCGCAAGGAGAATGATGAACTGGCCGAGCGCGAAGCAGGTGCT
AAGCGACAGCGAGCTGACGATGAGACAACTCTCGCCGCTCGGGTGGACGC
TCTGACAACCAGGGCCGTGGAGAATTTGACGTCCCAGATCACGCAGGGCA
CAAGTCAGCTCTATGAAATCCTTTATCAGGACCAGGCGGGAAGTATTCGG
CAAACAGATACCAAAGCTCACGAACGAAGGCTTCTTGCCGACCACATGTC
CCAGCAGGAAACTGCGCGGATATTGGCAAACTCGCAGCCGCCGAGCTACA
TCAGCCTCAGAGGTAACGCCATGTATTTGAGCGACATTGGACCTAAAGCT
TGATTTTATGCGACGGAACTGTCTCGGATCGGCTACGGCTCAATTTTCTC
AAATGCTCATGTGAGACAAAAATTGCCTTCTGGATTGCCGCGAGCTAGGT
AGGATGAGGGTACAACCACGAAACTTGACTCGAACGGTTGGCGATGTCGT
CGTCCTCGTCCTCGATAAGCCCTTGTTACCCGACCAAATTCAATCGTAGA
AGATTTTATTCATCAGGCCCATGTTCTCATGTATAGTAGTAGGTTAAATG
CAGTCGATGTCTCTTTAGGAAGGTCATTCCGTTATAACTTAGTATTCATG
TCTCAGATGTTCTTTCCCTTAGTAAATGATACATGCACCTGTCAGAATGC
AATAGCATAGTGCCAGATTGCAATAGTCTACGAGGTGCAGACATAGCTAT
GTTCTACTTCCGGAGAATT back to topCoding sequence (CDS) from alignment at ch2:1251945..1255513+ >KJC3_001955-T1 ID=KJC3_001955-T1|Name=KJC3_001955-T1|organism=Aspergillus niger KJC3|type=CDS|length=5724bp|location=Sequence derived from alignment at ch2:1251945..1255513+ (Aspergillus niger KJC3)
ATGGAGGCCAGAATCAAAGCTGTTCTAAAGGGTATTCGGAAGCTGAAAGG
GCCCGGTAGCCAACTCAAGGTGCGACATTTCGAGCGATTGCCCGACAAGG
CTACCTACCCGGACTATTACATGGAAATCAGAGAACCCATTGCTATCGAC
ATCATCAAGCGGAAGTCAAAGCGGAAGAAGTACAATTCGGTGGACCATTT
CATGAGGGACATGGACCTCATGTTCAACAACGCAAAGGCCTACAACCAGC
CAGAGAGTCAGATCTATAAGGACGCGGTTGACTTGCAATTAGAAGCACGG
AAACTGGCTGAGCACGAGAAGAAGAAGCCAGACAGTGAGTACTTGATGGA
GGATGGACGCTTGCCCCTACCGGATGGCATCCTGCACAAGAGCGAGCTGT
GGAAGGTTGGCGACTGGGTACATATTCAGAACCCGAATGACGTTACAAAA
CCCATTGTCGCCCAGATCTACCGCACATGGCAGGATTCTGAGGGTGAGAA
ATGGATCAACGCTTGTTGGTACTATCGCCCGGAGCAAACTGTCCATCACT
TCGAGAAGCATTTCTACCCCAATGAAGTGGTCAAAACTGGTCAGTATCGC
GATCACCGGGTGGAAGAGATTGTGGATCGTTGCTTCGTGATGTTCTTCAC
TCGCTACAATCGTGGTCGACCTCGAGGTCTTCCTCCCGATAAAGATGTCT
ACGTCTGCGAGGCTCGGTACAATGAGGAGAAGCATAAATTGAACAAGATC
AAAACGTGGGCGAGTTGTCTCCCTGATGAAGTCAGGGAGAAGGACTACGA
GATGGATCTGTTTGATGCCCCCCGAAGGATCAAAAAGATCCCCAGCCCAA
TCAAGCATTTGCTGAAGAGCGATGCAAAGGAAACCGACGACCTGCCCAAG
CCGACGTGGGGAGCCGACAATGCACCTCCTGTCGTCGGTGCAGTTCATCG
CCGTCCTCGAGATGAGAACGAATCCCCTCCCCCAGAACCGACCCCGTCAC
CACCTCCGTCCCTGCCACCACCGACTTTGCCCCCAGCTCCACCTCGACAG
CCATCGATCCCTCAGTCGTCTGGACGGCCCAGTATAGACAATCAAAGCAC
CGGCGCGACGGCTGGAACTGCGGCGGCGGTCCGATCCCCAGCTGCACCTA
TTCCTCCGGCCCAGAGCTCACCGGCACCAGTTCCTCCGAAGCGTGCCAGC
GCGTTTGTCCCTCAAACACCTCACCCGGCTACCTACCAAGCGTCGGCCCT
GTCTCATCCATACACGGCCGCTCAACAAACACCATATAATCTATATTCTA
GCGGCCGGTTGCCGGTTCCTCCCATGGGAATGTACAATCCCAACGCTCCT
CGTCCGATCGAAGTCTTCCATTTGAGCGATTCCGCGAATGCTGCCATTCC
GGCAGACATACGTGAACAGTTTCACTGTGATGACCAGGGTCGCGTGCTAT
TCTTCTCGAGCCCGCCGCTTGATATAGTCCCATCTGTTCAGCAAAAGCTA
GGCCATTCACTTAAATATCTGGCTGCCAAAGAGGAGCGAAGAAAGTTGGT
GGAGGCCAAGAAGCGCAAGGAGAATGATGAACTGGCCGAGCGCGAAGCAG
GTGCTAAGCGACAGCGAGCTGACGATGAGACAACTCTCGCCGCTCGGGTG
GACGCTCTGACAACCAGGGCCGTGGAGAATTTGACGTCCCAGATCACGCA
GGGCACAAGTCAGCTCTATGAAATCCTTTATCAGGACCAGGCGGGAAGTA
TTCGGCAAACAGATACCAAAGCTCACGAACGAAGGCTTCTTGCCGACCAC
ATGTCCCAGCAGGAAACTGCGCGGATATTGGCAAACTCGCAGCCGCCGAG
CTACATCAGCCTCAGAGGTAACGCCATGTATTTGAGCGACATTGGACCTA
AAGCTTGAATGGAGGCCAGAATCAAAGCTGTTCTAAAGGGTATTCGGAAG
CTGAAAGGGCCCGGTAGCCAACTCAAGGTGCGACATTTCGAGCGATTGCC
CGACAAGGCTACCTACCCGGACTATTACATGGAAATCAGAGAACCCATTG
CTATCGACATCATCAAGCGGAAGTCAAAGCGGAAGAAGTACAATTCGGTG
GACCATTTCATGAGGGACATGGACCTCATGTTCAACAACGCAAAGGCCTA
CAACCAGCCAGAGAGTCAGATCTATAAGGACGCGGTTGACTTGCAATTAG
AAGCACGGAAACTGGCTGAGCACGAGAAGAAGAAGCCAGACAGTGAGTAC
TTGATGGAGGATGGACGCTTGCCCCTACCGGATGGCATCCTGCACAAGAG
CGAGCTGTGGAAGGTTGGCGACTGGGTACATATTCAGAACCCGAATGACG
TTACAAAACCCATTGTCGCCCAGATCTACCGCACATGGCAGGATTCTGAG
GGTGAGAAATGGATCAACGCTTGTTGGTACTATCGCCCGGAGCAAACTGT
CCATCACTTCGAGAAGCATTTCTACCCCAATGAAGTGGTCAAAACTGGTC
AGTATCGCGATCACCGGGTGGAAGAGATTGTGGATCGTTGCTTCGTGATG
TTCTTCACTCGCTACAATCGTGGTCGACCTCGAGGTCTTCCTCCCGATAA
AGATGTCTACGTCTGCGAGGCTCGGTACAATGAGGAGAAGCATAAATTGA
ACAAGATCAAAACGTGGGCGAGTTGTCTCCCTGATGAAGTCAGGGAGAAG
GACTACGAGATGGATCTGTTTGATGCCCCCCGAAGGATCAAAAAGATCCC
CAGCCCAATCAAGCATTTGCTGAAGAGCGATGCAAAGGAAACCGACGACC
TGCCCAAGCCGACGTGGGGAGCCGACAATGCACCTCCTGTCGTCGGTGCA
GTTCATCGCCGTCCTCGAGATGAGAACGAATCCCCTCCCCCAGAACCGAC
CCCGTCACCACCTCCGTCCCTGCCACCACCGACTTTGCCCCCAGCTCCAC
CTCGACAGCCATCGATCCCTCAGTCGTCTGGACGGCCCAGTATAGACAAT
CAAAGCACCGGCGCGACGGCTGGAACTGCGGCGGCGGTCCGATCCCCAGC
TGCACCTATTCCTCCGGCCCAGAGCTCACCGGCACCAGTTCCTCCGAAGC
GTGCCAGCGCGTTTGTCCCTCAAACACCTCACCCGGCTACCTACCAAGCG
TCGGCCCTGTCTCATCCATACACGGCCGCTCAACAAACACCATATAATCT
ATATTCTAGCGGCCGGTTGCCGGTTCCTCCCATGGGAATGTACAATCCCA
ACGCTCCTCGTCCGATCGAAGTCTTCCATTTGAGCGATTCCGCGAATGCT
GCCATTCCGGCAGACATACGTGAACAGTTTCACTGTGATGACCAGGGTCG
CGTGCTATTCTTCTCGAGCCCGCCGCTTGATATAGTCCCATCTGTTCAGC
AAAAGCTAGGCCATTCACTTAAATATCTGGCTGCCAAAGAGGAGCGAAGA
AAGTTGGTGGAGGCCAAGAAGCGCAAGGAGAATGATGAACTGGCCGAGCG
CGAAGCAGGTGCTAAGCGACAGCGAGCTGACGATGAGACAACTCTCGCCG
CTCGGGTGGACGCTCTGACAACCAGGGCCGTGGAGAATTTGACGTCCCAG
ATCACGCAGGGCACAAGTCAGCTCTATGAAATCCTTTATCAGGACCAGGC
GGGAAGTATTCGGCAAACAGATACCAAAGCTCACGAACGAAGGCTTCTTG
CCGACCACATGTCCCAGCAGGAAACTGCGCGGATATTGGCAAACTCGCAG
CCGCCGAGCTACATCAGCCTCAGAGGTAACGCCATGTATTTGAGCGACAT
TGGACCTAAAGCTTGAATGGAGGCCAGAATCAAAGCTGTTCTAAAGGGTA
TTCGGAAGCTGAAAGGGCCCGGTAGCCAACTCAAGGTGCGACATTTCGAG
CGATTGCCCGACAAGGCTACCTACCCGGACTATTACATGGAAATCAGAGA
ACCCATTGCTATCGACATCATCAAGCGGAAGTCAAAGCGGAAGAAGTACA
ATTCGGTGGACCATTTCATGAGGGACATGGACCTCATGTTCAACAACGCA
AAGGCCTACAACCAGCCAGAGAGTCAGATCTATAAGGACGCGGTTGACTT
GCAATTAGAAGCACGGAAACTGGCTGAGCACGAGAAGAAGAAGCCAGACA
GTGAGTACTTGATGGAGGATGGACGCTTGCCCCTACCGGATGGCATCCTG
CACAAGAGCGAGCTGTGGAAGGTTGGCGACTGGGTACATATTCAGAACCC
GAATGACGTTACAAAACCCATTGTCGCCCAGATCTACCGCACATGGCAGG
ATTCTGAGGGTGAGAAATGGATCAACGCTTGTTGGTACTATCGCCCGGAG
CAAACTGTCCATCACTTCGAGAAGCATTTCTACCCCAATGAAGTGGTCAA
AACTGGTCAGTATCGCGATCACCGGGTGGAAGAGATTGTGGATCGTTGCT
TCGTGATGTTCTTCACTCGCTACAATCGTGGTCGACCTCGAGGTCTTCCT
CCCGATAAAGATGTCTACGTCTGCGAGGCTCGGTACAATGAGGAGAAGCA
TAAATTGAACAAGATCAAAACGTGGGCGAGTTGTCTCCCTGATGAAGTCA
GGGAGAAGGACTACGAGATGGATCTGTTTGATGCCCCCCGAAGGATCAAA
AAGATCCCCAGCCCAATCAAGCATTTGCTGAAGAGCGATGCAAAGGAAAC
CGACGACCTGCCCAAGCCGACGTGGGGAGCCGACAATGCACCTCCTGTCG
TCGGTGCAGTTCATCGCCGTCCTCGAGATGAGAACGAATCCCCTCCCCCA
GAACCGACCCCGTCACCACCTCCGTCCCTGCCACCACCGACTTTGCCCCC
AGCTCCACCTCGACAGCCATCGATCCCTCAGTCGTCTGGACGGCCCAGTA
TAGACAATCAAAGCACCGGCGCGACGGCTGGAACTGCGGCGGCGGTCCGA
TCCCCAGCTGCACCTATTCCTCCGGCCCAGAGCTCACCGGCACCAGTTCC
TCCGAAGCGTGCCAGCGCGTTTGTCCCTCAAACACCTCACCCGGCTACCT
ACCAAGCGTCGGCCCTGTCTCATCCATACACGGCCGCTCAACAAACACCA
TATAATCTATATTCTAGCGGCCGGTTGCCGGTTCCTCCCATGGGAATGTA
CAATCCCAACGCTCCTCGTCCGATCGAAGTCTTCCATTTGAGCGATTCCG
CGAATGCTGCCATTCCGGCAGACATACGTGAACAGTTTCACTGTGATGAC
CAGGGTCGCGTGCTATTCTTCTCGAGCCCGCCGCTTGATATAGTCCCATC
TGTTCAGCAAAAGCTAGGCCATTCACTTAAATATCTGGCTGCCAAAGAGG
AGCGAAGAAAGTTGGTGGAGGCCAAGAAGCGCAAGGAGAATGATGAACTG
GCCGAGCGCGAAGCAGGTGCTAAGCGACAGCGAGCTGACGATGAGACAAC
TCTCGCCGCTCGGGTGGACGCTCTGACAACCAGGGCCGTGGAGAATTTGA
CGTCCCAGATCACGCAGGGCACAAGTCAGCTCTATGAAATCCTTTATCAG
GACCAGGCGGGAAGTATTCGGCAAACAGATACCAAAGCTCACGAACGAAG
GCTTCTTGCCGACCACATGTCCCAGCAGGAAACTGCGCGGATATTGGCAA
ACTCGCAGCCGCCGAGCTACATCAGCCTCAGAGGTAACGCCATGTATTTG
AGCGACATTGGACCTAAAGCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003682 | chromatin binding |
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001955-T1.utr5p1 | KJC3_001955-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001955-T1.utr3p1 | KJC3_001955-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018359 |
| DBxref | InterPro:IPR036427 |
| DBxref | InterPro:IPR043151 |
| DBxref | InterPro:IPR001025 |
| DBxref | InterPro:IPR001487 |
| DBxref | PFAM:PF00439 |
| DBxref | PFAM:PF01426 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1251945..1255513 + |
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