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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1269872..1270669+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001960-T1 ID=KJC3_001960-T1|Name=KJC3_001960-T1|organism=Aspergillus niger KJC3|type=mRNA|length=798bp|location=Sequence derived from alignment at ch2:1269872..1270669+ (Aspergillus niger KJC3)
ATGCCTACCCGTTTCTCGAAGACAAGGAAAGCGTGAGTCGCTTCAGTTCT
CCCTTTCGCCTCCGGTGGTCGACCGTCCCGTTTGTCGTGGTCAATTTGCG
ACAGGCTTGTGGCCTCATCCGACCACCTTCCGCCCCGTCTACCAGAACAA
CAAGAAAACTGACTTTTGTGTCCTCTTCCTTAGCCGCGGTCATGTCTCGG
CCGGTTACGGTCGCATTGGCAAGCACCGTAAGCACCCCGGTGGTCGTGGT
ATGGCCGGTGGTCAGCACCACCACCGCACCAACCTCGACAAGTACCACCC
CGGTTACTTCGGTAAGGTCGGTATGAGGTACTTCCACAAGACCCAGCAGC
AGTTCTGGAAGCCCACTATCAACCTTGACAAGGTACGTTTAAAATCGACA
ATACGATTCCAATCGAGAAGAGAAGCAGAAGGATGAGAAAGCGCAAGGGG
TGGACGTTTTGTCATCACACGACGTGGAAGAAGAATAGGAGAGGGAATAG
AACAGGAGCGCGAGAACACATGAGACTGGAATACGTTTTGAAGGATGTGG
GTAGCTGATCAATTCTCTTTCCAATATAGCTGTGGTCTCTCGTCCCCGCC
GAGAAGCGTGACGCCTACCTGAGCGGCCAGAAGACCGACACCGCCCCCGT
CATCGACCTCCTTCCCCTCGGCTACTCCAAGGTTCTCGGCAAGGGCCGTC
TCCCCGAGGTCCCCATCGTCGTCCGCGCTCGCTACTTCAGCCGGGATGCT
GAGGAGAAGATCAAGGCTGCCGGTGGTGTTGTTGAGCTCGTTGCTTAA back to topCoding sequence (CDS) from alignment at ch2:1269872..1270669+ >KJC3_001960-T1 ID=KJC3_001960-T1|Name=KJC3_001960-T1|organism=Aspergillus niger KJC3|type=CDS|length=1350bp|location=Sequence derived from alignment at ch2:1269872..1270669+ (Aspergillus niger KJC3)
ATGCCTACCCGTTTCTCGAAGACAAGGAAAGCCCGCGGTCATGTCTCGGC
CGGTTACGGTCGCATTGGCAAGCACCGTAAGCACCCCGGTGGTCGTGGTA
TGGCCGGTGGTCAGCACCACCACCGCACCAACCTCGACAAGTACCACCCC
GGTTACTTCGGTAAGGTCGGTATGAGGTACTTCCACAAGACCCAGCAGCA
GTTCTGGAAGCCCACTATCAACCTTGACAAGCTGTGGTCTCTCGTCCCCG
CCGAGAAGCGTGACGCCTACCTGAGCGGCCAGAAGACCGACACCGCCCCC
GTCATCGACCTCCTTCCCCTCGGCTACTCCAAGGTTCTCGGCAAGGGCCG
TCTCCCCGAGGTCCCCATCGTCGTCCGCGCTCGCTACTTCAGCCGGGATG
CTGAGGAGAAGATCAAGGCTGCCGGTGGTGTTGTTGAGCTCGTTGCTTAA
ATGCCTACCCGTTTCTCGAAGACAAGGAAAGCCCGCGGTCATGTCTCGGC
CGGTTACGGTCGCATTGGCAAGCACCGTAAGCACCCCGGTGGTCGTGGTA
TGGCCGGTGGTCAGCACCACCACCGCACCAACCTCGACAAGTACCACCCC
GGTTACTTCGGTAAGGTCGGTATGAGGTACTTCCACAAGACCCAGCAGCA
GTTCTGGAAGCCCACTATCAACCTTGACAAGCTGTGGTCTCTCGTCCCCG
CCGAGAAGCGTGACGCCTACCTGAGCGGCCAGAAGACCGACACCGCCCCC
GTCATCGACCTCCTTCCCCTCGGCTACTCCAAGGTTCTCGGCAAGGGCCG
TCTCCCCGAGGTCCCCATCGTCGTCCGCGCTCGCTACTTCAGCCGGGATG
CTGAGGAGAAGATCAAGGCTGCCGGTGGTGTTGTTGAGCTCGTTGCTTAA
ATGCCTACCCGTTTCTCGAAGACAAGGAAAGCCCGCGGTCATGTCTCGGC
CGGTTACGGTCGCATTGGCAAGCACCGTAAGCACCCCGGTGGTCGTGGTA
TGGCCGGTGGTCAGCACCACCACCGCACCAACCTCGACAAGTACCACCCC
GGTTACTTCGGTAAGGTCGGTATGAGGTACTTCCACAAGACCCAGCAGCA
GTTCTGGAAGCCCACTATCAACCTTGACAAGCTGTGGTCTCTCGTCCCCG
CCGAGAAGCGTGACGCCTACCTGAGCGGCCAGAAGACCGACACCGCCCCC
GTCATCGACCTCCTTCCCCTCGGCTACTCCAAGGTTCTCGGCAAGGGCCG
TCTCCCCGAGGTCCCCATCGTCGTCCGCGCTCGCTACTTCAGCCGGGATG
CTGAGGAGAAGATCAAGGCTGCCGGTGGTGTTGTTGAGCTCGTTGCTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015934 | large ribosomal subunit |
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036227 |
| DBxref | InterPro:IPR030878 |
| DBxref | InterPro:IPR001196 |
| DBxref | InterPro:IPR021131 |
| DBxref | PFAM:PF00828 |
| Product | 60S ribosomal protein L28 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1269872..1270669 + |
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