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KJC3_001972-T1, KJC3_001972-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_001972-T1
Unique NameKJC3_001972-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1316161..1318360-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_001972-T1 ID=KJC3_001972-T1|Name=KJC3_001972-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2200bp|location=Sequence derived from alignment at ch2:1316161..1318360- (Aspergillus niger KJC3)
CATCATAATCAATCATCATCACTCTGACTTTACCTCGCCCTCGTCTTACT
CCTCCCCTGTATCTAGTTAAAAGAGCTTCGACCCTCCCGGTTTGGTCAAG
CCTGGCCTCTCTCTCCCCTCCCCAGATATACTTCCTCTTTACCACACCTT
CTACTACGCACCTTGCCTTTAGCCCAACCACCGGTGGATCGCTGTAACGC
TATCCTGTCCTTGGAACCGTTCAACTTGATCATTAATCATTACATGCGGT
TGTCTTGATCGAGCTCTCGCATTGGCTCGAACCCTCTGAACCTTCTCTGC
TCATTACACCTTCTTTTACCTTTATCCATCCGGCCTCGTTACATCATCGA
CCAATCTTACGTATTGTCGATCACTGACCATTGCAACACCGCACCACAAA
AAAAGGTATAGGCGAGGACAAGGCATAAGAAAAGCAATAAGAAAAAGAAA
GGGAAACCAGACTTCGAAAGAACAGGAAAACAAACAAAAAAAAAGCAAAG
CCGACTAGTTAGCCTACAAAACTAACCACCGGAACTGGAACTCGCGCTTT
CGATACTCTTTTTAATCTTCACCTTTTTGTTTGACTGGGAAGATACTCTT
TCGATTTCTCTGGCCACAACTGCCTTTCAATACCCGCAACCAAACCTCCT
TCAACCTCCATAAGTATATATATATGCGCACAATGACGGCACGCCAATCA
TCACCTACATCAGACCACTCACATTCGGACGGCAATGTCCGCAAGAGGGT
CTGTAAGGCTTGCGATCGGTGTAGACTGAAGAAATCCAAGGTAAGCCAAG
CCATGGCTCAGCATCAGCTTGTCCTGATGCACTGACCCGGTGCAGTGTGA
CGGATCCAACCCATGTGGTCGGTGCAGGACAGATAATGCCATCTGTGTCT
TTGGCGAGAGGAAGAAGGCTCACGACAAAGTGTACCCCAAGGGGTGAGCT
TGCACCCATTCGACATGTTGTATCAATCGCTAACCTGGCTCTCCGCCGCC
TTTTAGATATGTCGAGATGCTTGAACAACAACAAACGTGGCTGGTCAATG
GCCTTCAAGAAATGTACCGTCGCGCCTTGGAGGGTGAAGGCTGGCCGGGA
GAGCCCTTGAAATGCGAGCCCAACGGCCATCCTCTAACGCACGATCTGCT
TACACGACTCGGCGCTTTGGACCAGACCAAGGGTGAGCGCTTCGAAGAGA
ACACCGAGGCCATGCAGCAAGATCTCTGGAGGCAGAATTCCGGACACATG
CAACGCCAGGAGTCATCCGATGGTAGCTCAGAAAGCGCGCAGTCACCTAT
CATGCCCTCCCGCTTCTCAGACCCGTTTGCTCGCCAGCTCTCGAGTACAC
AATCCAGCTTCAGCACACCGTCCCAAACGCAAGGTCCCACTATCAAATCA
GAGCCTCAAATGGCACCGACGAATCCCGCCTTCGTTGCGCCCATGACCAT
GCAAGGGGTGGTGAACCCCCTCGCCCTTCAGACCCCGCAACAATGGCCCA
ACAATAACTTTGGCGCTTTCGACGATATGGATCTAATAGGCGCTTCCGAC
TATACGAATTTGTCCTTTGACGACCAGGTTCCCTCGCCAATGTTCAACCG
TCAACTACCGATGAGCTGCATGCTTTCCTCTTCCTCGTATATGGACACAA
AGGGTGACTATGAAGACATCAATCAGTTCTTAAATGCCAATGCGCCCGAG
ATTGCATCGACCTGAGATCACTACGATACGACGAAGTTCAGCATATTAAT
GTCTTTCTTTTGTCTGACATTTGTTTTGCATACGCCGTACGACGTAACGC
GTGTATTTACTACATGCTACATTTCGACATTGGGACTACTTTGAACATAT
GGCAGCACCCACCTTCATTTAGAAGGGTAATTGGATAGCTGTACAGTGGG
ATTCTTTTGGGTGACTGGCATCACATTCTTTTCCTTTCTTTTCTTGTGGG
GACAGCATCCTCTATCTTATATTTTGGCTTATATTTTTTTTCTAACGATG
AAGGCGCCGAGGTGTTTTGGGAGTTGGAGTTCACACAAAACATTTGGACG
GGCTCTTGAAATAGGTAGGGCGGTTGGTTTTCTCTCTCTTTGGATCCTTT
TGCGTGGATACTTGCCGATGCTGGTTCTAGTTTCGGATGTTCTATATGTC
ATTCTTATGCCTCCGACGTTGAAAATATACAATTTATTCTCTATTCTTAT
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Coding sequence (CDS) from alignment at ch2:1316161..1318360-

>KJC3_001972-T1 ID=KJC3_001972-T1|Name=KJC3_001972-T1|organism=Aspergillus niger KJC3|type=CDS|length=2772bp|location=Sequence derived from alignment at ch2:1316161..1318360- (Aspergillus niger KJC3)
ATATGTCGAGATGCTTGAACAACAACAAACGTGGCTGGTCAATGGCCTTC
AAGAAATGTACCGTCGCGCCTTGGAGGGTGAAGGCTGGCCGGGAGAGCCC
TTGAAATGCGAGCCCAACGGCCATCCTCTAACGCACGATCTGCTTACACG
ACTCGGCGCTTTGGACCAGACCAAGGGTGAGCGCTTCGAAGAGAACACCG
AGGCCATGCAGCAAGATCTCTGGAGGCAGAATTCCGGACACATGCAACGC
CAGGAGTCATCCGATGGTAGCTCAGAAAGCGCGCAGTCACCTATCATGCC
CTCCCGCTTCTCAGACCCGTTTGCTCGCCAGCTCTCGAGTACACAATCCA
GCTTCAGCACACCGTCCCAAACGCAAGGTCCCACTATCAAATCAGAGCCT
CAAATGGCACCGACGAATCCCGCCTTCGTTGCGCCCATGACCATGCAAGG
GGTGGTGAACCCCCTCGCCCTTCAGACCCCGCAACAATGGCCCAACAATA
ACTTTGGCGCTTTCGACGATATGGATCTAATAGGCGCTTCCGACTATACG
AATTTGTCCTTTGACGACCAGGTTCCCTCGCCAATGTTCAACCGTCAACT
ACCGATGAGCTGCATGCTTTCCTCTTCCTCGTATATGGACACAAAGGGTG
ACTATGAAGACATCAATCAGTTCTTAAATGCCAATGCGCCCGAGATTGCA
TCGACCTGATGTGACGGATCCAACCCATGTGGTCGGTGCAGGACAGATAA
TGCCATCTGTGTCTTTGGCGAGAGGAAGAAGGCTCACGACAAAGTGTACC
CCAAGGGATGCGCACAATGACGGCACGCCAATCATCACCTACATCAGACC
ACTCACATTCGGACGGCAATGTCCGCAAGAGGGTCTGTAAGGCTTGCGAT
CGGTGTAGACTGAAGAAATCCAAGATATGTCGAGATGCTTGAACAACAAC
AAACGTGGCTGGTCAATGGCCTTCAAGAAATGTACCGTCGCGCCTTGGAG
GGTGAAGGCTGGCCGGGAGAGCCCTTGAAATGCGAGCCCAACGGCCATCC
TCTAACGCACGATCTGCTTACACGACTCGGCGCTTTGGACCAGACCAAGG
GTGAGCGCTTCGAAGAGAACACCGAGGCCATGCAGCAAGATCTCTGGAGG
CAGAATTCCGGACACATGCAACGCCAGGAGTCATCCGATGGTAGCTCAGA
AAGCGCGCAGTCACCTATCATGCCCTCCCGCTTCTCAGACCCGTTTGCTC
GCCAGCTCTCGAGTACACAATCCAGCTTCAGCACACCGTCCCAAACGCAA
GGTCCCACTATCAAATCAGAGCCTCAAATGGCACCGACGAATCCCGCCTT
CGTTGCGCCCATGACCATGCAAGGGGTGGTGAACCCCCTCGCCCTTCAGA
CCCCGCAACAATGGCCCAACAATAACTTTGGCGCTTTCGACGATATGGAT
CTAATAGGCGCTTCCGACTATACGAATTTGTCCTTTGACGACCAGGTTCC
CTCGCCAATGTTCAACCGTCAACTACCGATGAGCTGCATGCTTTCCTCTT
CCTCGTATATGGACACAAAGGGTGACTATGAAGACATCAATCAGTTCTTA
AATGCCAATGCGCCCGAGATTGCATCGACCTGATGTGACGGATCCAACCC
ATGTGGTCGGTGCAGGACAGATAATGCCATCTGTGTCTTTGGCGAGAGGA
AGAAGGCTCACGACAAAGTGTACCCCAAGGGATGCGCACAATGACGGCAC
GCCAATCATCACCTACATCAGACCACTCACATTCGGACGGCAATGTCCGC
AAGAGGGTCTGTAAGGCTTGCGATCGGTGTAGACTGAAGAAATCCAAGAT
ATGTCGAGATGCTTGAACAACAACAAACGTGGCTGGTCAATGGCCTTCAA
GAAATGTACCGTCGCGCCTTGGAGGGTGAAGGCTGGCCGGGAGAGCCCTT
GAAATGCGAGCCCAACGGCCATCCTCTAACGCACGATCTGCTTACACGAC
TCGGCGCTTTGGACCAGACCAAGGGTGAGCGCTTCGAAGAGAACACCGAG
GCCATGCAGCAAGATCTCTGGAGGCAGAATTCCGGACACATGCAACGCCA
GGAGTCATCCGATGGTAGCTCAGAAAGCGCGCAGTCACCTATCATGCCCT
CCCGCTTCTCAGACCCGTTTGCTCGCCAGCTCTCGAGTACACAATCCAGC
TTCAGCACACCGTCCCAAACGCAAGGTCCCACTATCAAATCAGAGCCTCA
AATGGCACCGACGAATCCCGCCTTCGTTGCGCCCATGACCATGCAAGGGG
TGGTGAACCCCCTCGCCCTTCAGACCCCGCAACAATGGCCCAACAATAAC
TTTGGCGCTTTCGACGATATGGATCTAATAGGCGCTTCCGACTATACGAA
TTTGTCCTTTGACGACCAGGTTCCCTCGCCAATGTTCAACCGTCAACTAC
CGATGAGCTGCATGCTTTCCTCTTCCTCGTATATGGACACAAAGGGTGAC
TATGAAGACATCAATCAGTTCTTAAATGCCAATGCGCCCGAGATTGCATC
GACCTGATGTGACGGATCCAACCCATGTGGTCGGTGCAGGACAGATAATG
CCATCTGTGTCTTTGGCGAGAGGAAGAAGGCTCACGACAAAGTGTACCCC
AAGGGATGCGCACAATGACGGCACGCCAATCATCACCTACATCAGACCAC
TCACATTCGGACGGCAATGTCCGCAAGAGGGTCTGTAAGGCTTGCGATCG
GTGTAGACTGAAGAAATCCAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_001972KJC3_001972Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001972-T1KJC3_001972-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001972-T1.cdsKJC3_001972-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001972-T1.utr3p1KJC3_001972-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001972-T1.exon3KJC3_001972-T1.exon3Aspergillus niger KJC3exon
KJC3_001972-T1.exon2KJC3_001972-T1.exon2Aspergillus niger KJC3exon
KJC3_001972-T1.exon1KJC3_001972-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_001972-T1.utr5p1KJC3_001972-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1316161..1318360 -
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