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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1360887..1364786- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_001988-T1 ID=KJC3_001988-T1|Name=KJC3_001988-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3900bp|location=Sequence derived from alignment at ch2:1360887..1364786- (Aspergillus niger KJC3)
GTACAGAGCCTTGTCTGGTCAAAGTTCTGAGATAAAAATGATCTCATGTC
ATTTTACTGACGATGAGCAATATTTTGAACCGTCATTCTCGCGGGATGGG
GGCGTATCGAGGGGCCAGGAAAGCAGGCAACTGAAGGGAACTAAACGCGA
TAACGAACCATTGAAACGGCCCAAGAAAGGAACGAGAAGCGCACCCGCCG
GAATGGAACCCCGGCCATACAAACACGCTTTCCCCGGTTACTGCTTTCGC
CCACGTCGGACCGGCTCTGGAAAAGCATCTTCTTTCTTTATCATCTATAA
CACTCTTCTGTATGTATATCTAGCAAGGGTATACTTGCTGCTGAAACCCC
CCGACAGCGCCCCTTTTCCCCATCTTTTTAGACTGCAGTTTTGTTCTTCT
TTTGCAGTTGCTGGCCCGGTGTTTCCCATCTGGCCTGCCTCCCTCTCGGC
CTTCCCCTTCTCTCTCTGTTCCTCTCACTCTCACTCTCGCTTCTCTCTCT
CCCTTCCCTCTTTCTTCCTTTTCCTTTCCTCCCCCCATCCATTCATCGTC
ATCCACTTTTCTACTCCCCCCCATCCATCATCTAACTTTCCATCTCCACC
ACCTTCCTTCAACCTTTCTTCATCTCCATCCATTCGACTTTCAATTCTTT
TGTTATCTAATTTTATTGTTCTGAGTACAAGGATTAGATCTCCTTCATCA
CCAACCACCACCACCACCACCACTCTCACCACCCAAGGACGTCAGTCCAT
CACTCCACTCCCCCCTCTGACCAACCTCGCCCTTTCACTCGATGCTTGAC
CACCAGCTGTGATTCGTCCCTTCGCGCCCTCCCCTCCCTTCCTCTCCTCT
TCACCATGTCCACAGAGCCATCTGTTTTGTCGACTGCAGGTGAACACGAG
TCGCGTTCCGCCATCGAATATCCCGCCCGCGAAACTCGTACCCGACGGTC
GCGTCGCAGGAAGGAAGACGATCTCGACCTCGAGCGGAAAGAACCCGTCC
GAACGCCTAAAACCAGAGAAAAAGAAAAGGAGAAGGAGAAAGAATTGAAG
GAAAAGGAAAAAGAGAAGGAGAAGGAGAAGGAGGAAAAGCTGGAGCCCAA
ACGGGGCAGCCGTCGCCAACGAGAGAAGTCCTCGTCGACATCTACTAACC
CGCCCAATTCGGCCGCGTCTCACTCTCGCAAGAGGCCCAAGTTGGAGGCT
GCCACCCCCGACCAAAGTCCCAGTGTCGCGGCGCCTCCTGCCCGTTCACC
GAATCCCGCGCCTGCTGCCGCTCCAGAAGGGCCTGCGACCAGTCCTCCTA
CCACTGCAGTTTCGGCTGCATCTGCAGCTCCGGCCCCAGCCCCGGCTCCA
GCTCCAGCTCCAGCTCCAGCTCTAGCCCCGGCCTCGACGCCTGCCCCAAG
CACTCCCATAACGAGCCCGCGGAAACAAACACTAGATTCTGAAGTGATGT
CTCATGGGACATCGCGTCTCCTGAACCCTCCGTCTTTGCCACCCTCGGCC
CATCCAACACCGCCATCCGTGGCCCCTACAACTCTCGTCTCACCTTATCC
GGGCCTGATGCCCTCCGCTCCTCCTCCGCGGCCACACTCCCAGCCGCCCG
CTCCTCCGCCGCAAAGAACCAGCGGTCAAAATTTCGATCCCATTCGGTCG
GCCTTCGATACATCGTCTCCGGCCCCAGCCCCAGCACCGACCCCGACGTT
GGCTGCGGCGCCACCTCCGGGGCGCCCCTCCTTTAGTCCCCCGGCCCGCC
CTATCTCACCCCGTCCGACATATCGCGCCAGTGCCTCTCCGGCCATTGCT
AGTATCATTGATCCGCCTGCTGCCTCGTCGCCGCCCGTCTATGTCCCTCG
ACCGTATGGCTCTCCGATTCACGGTGCGTCGAGCTACTCTCCATCGCCCG
CGGGCGCATCCATCGCTCCCACTCCGCCACAACCGCAACCACAACCACAG
CCTCAATCTCAACCCCCACGACCGGTCTCACCATATGCTCATCGATCCCC
CTATGCCACACCGGTCCAAGCACCACCCCCGCCGCCGCCTCAGGAATCAC
GGACATCTGCACCAGAGCCACAACCCCCGTCTGTCCCTCCTCCTTCGGCC
TCGGAACCTCATACCCCAGCACCTTCTAATAACCGACCGCCCTCGCCGGG
TCCCACGCCCATGGATGTGGAGCCCGAGGCACCTGCTGCGTCGACGGCCC
CTAAGGTGACCAAGAAGGAAGCCAAAACCCCCTCAACAGTACCTACTTCG
AAGGCGCCGTCACCCAAACCGGCCCGGGCCGCCAAGGAAACGCCTTCGCT
ACCTCAAGGCTCGGGATTGATCTCCAATGCCCTCTTCGGAGTGGATGGTG
GCTCCTCCACGGGCGACTCGAGTAACCGCCAGGTGCCGAGTATCATCCTA
CACGTCCCTATTCAGGGTCACGGGAATCAGATCATCAACTTCGCCCGTTT
AGCGGAGGAGCAATATGGGTTTGCGGCCCTGCATCCTCGCCTCGCTGCGC
ACAAGGAACGGCTGGCACGGGTAGCTGCGGCTGGAGCGGCCTTGGAGCGC
AACGACAAGGCGAGCGGACGTGGTCTGTCTGCGGGAGAGAGTGCAGATGA
GGATTTGAGCATGGAGGTCGACCGGGACAGCGAGATGGATGGGGAAGGTG
CGACTTCCGCACCAGCCCGCTCGAATGGGCCTGACCCGGCAGATGGGAAG
AAGAAGCGTCGTAAGAAGAAAATGGAGGAGTATGATCGAGACGACCCGTT
CGTGGATGACAGTGAGTTAGCCTGGCAGGAACAGGCGGCCGCCAGTAAGG
ACGGGTTCTTTGTTTACAGTGGGCCGCTGGTGCCGGAGGGTGAAAAGGTC
CAAGTGGAACGGTAAGCGCCATACCCTTGGGGACATTGAATCCCTTGCTT
TTTGTGTTGACTGAGATGCTAATGGTTTATAAATAGGGCCGACGGTACGA
TCAAGCGTGGTCGCGGCCGTGGACGTGGGAGTCGGGGCCGGGCGCCTCTG
ACATCCCACCAGGTGCCTTTGGCCGCTGCGGTTCCAATCTCCCAGGAAAC
CGGTCTTCCCCTTCGGGGCCCCGGCTCACGAGGAGGCAGTACTACTCGTC
GCCCGCGCATCAGCAAAGCTGCTCGTCAGCAGGCAGAGCAGGAGAAAGCC
AACGCCGCATCGGGGACCCCCCACGGACGCGGTGGAGGTGCTGCCGGTCG
TGGCGGTTCGACCAGCAGTCGAGGAGGCAAGCACCCCATGGTCGAGTTGG
CGCCGCGTCCAAATATTGCCCCTGCTCCTCCGGGCCCGAGTCCAGTGAGT
GGATCAGAGCTTGCGATGAAGTAGGGCTGGTTGCCTATCATCTTCTTTTC
TCTCCTCAGTCTCGTCATGAGTGTCCTATGCTGGGATTCAGGGATGCCGG
TTCCTGTTCTTTGACGGACTGCTCAGTATGTGCGTGCTTTTGGTATCTAC
TTTCATTTTTTTTTTCTGTTGGCGTCGTCGGATTCCGGGTTACAGGGGGA
ATGATGAACGGGCATGAGTAGAAGGGACCATCCAGTCTGATGTTGGGTTG
TGTTTGTTGTCGGATGTGCGGTTTCTGACCGTCTATCTTCGTTGGCTACT
TATATGCCATTCGGCGCTATTCTCTACGTCTCTCGTATGGTGTGATGGGA
TTTCCTCGTTTCCTACCTGCATGATTCGGTGCGGTGTTTATGCTTCTCTC
TTGTATCTGTGTGCCTTTGCGCTTGCTCCATGTTTTACCTGTTGACTTTC
ACATGGAAAGAAAGCCAATATTGCCATGATCATTTCCTCCCTACTACTTT
ACTGTCTAGCATTGAAAACGAAGCAAAACATTGACAGGCATGGCCATTTT
ATCCCATCCCAGTGGTGTAGACTGTAGTCGGTCTATAGCATGCAAAGGCT
back to topCoding sequence (CDS) from alignment at ch2:1360887..1364786- >KJC3_001988-T1 ID=KJC3_001988-T1|Name=KJC3_001988-T1|organism=Aspergillus niger KJC3|type=CDS|length=4788bp|location=Sequence derived from alignment at ch2:1360887..1364786- (Aspergillus niger KJC3)
GGCCGACGGTACGATCAAGCGTGGTCGCGGCCGTGGACGTGGGAGTCGGG
GCCGGGCGCCTCTGACATCCCACCAGGTGCCTTTGGCCGCTGCGGTTCCA
ATCTCCCAGGAAACCGGTCTTCCCCTTCGGGGCCCCGGCTCACGAGGAGG
CAGTACTACTCGTCGCCCGCGCATCAGCAAAGCTGCTCGTCAGCAGGCAG
AGCAGGAGAAAGCCAACGCCGCATCGGGGACCCCCCACGGACGCGGTGGA
GGTGCTGCCGGTCGTGGCGGTTCGACCAGCAGTCGAGGAGGCAAGCACCC
CATGGTCGAGTTGGCGCCGCGTCCAAATATTGCCCCTGCTCCTCCGGGCC
CGAGTCCAGTGAGTGGATCAGAGCTTGCGATGAAGTAGATGTCCACAGAG
CCATCTGTTTTGTCGACTGCAGGTGAACACGAGTCGCGTTCCGCCATCGA
ATATCCCGCCCGCGAAACTCGTACCCGACGGTCGCGTCGCAGGAAGGAAG
ACGATCTCGACCTCGAGCGGAAAGAACCCGTCCGAACGCCTAAAACCAGA
GAAAAAGAAAAGGAGAAGGAGAAAGAATTGAAGGAAAAGGAAAAAGAGAA
GGAGAAGGAGAAGGAGGAAAAGCTGGAGCCCAAACGGGGCAGCCGTCGCC
AACGAGAGAAGTCCTCGTCGACATCTACTAACCCGCCCAATTCGGCCGCG
TCTCACTCTCGCAAGAGGCCCAAGTTGGAGGCTGCCACCCCCGACCAAAG
TCCCAGTGTCGCGGCGCCTCCTGCCCGTTCACCGAATCCCGCGCCTGCTG
CCGCTCCAGAAGGGCCTGCGACCAGTCCTCCTACCACTGCAGTTTCGGCT
GCATCTGCAGCTCCGGCCCCAGCCCCGGCTCCAGCTCCAGCTCCAGCTCC
AGCTCTAGCCCCGGCCTCGACGCCTGCCCCAAGCACTCCCATAACGAGCC
CGCGGAAACAAACACTAGATTCTGAAGTGATGTCTCATGGGACATCGCGT
CTCCTGAACCCTCCGTCTTTGCCACCCTCGGCCCATCCAACACCGCCATC
CGTGGCCCCTACAACTCTCGTCTCACCTTATCCGGGCCTGATGCCCTCCG
CTCCTCCTCCGCGGCCACACTCCCAGCCGCCCGCTCCTCCGCCGCAAAGA
ACCAGCGGTCAAAATTTCGATCCCATTCGGTCGGCCTTCGATACATCGTC
TCCGGCCCCAGCCCCAGCACCGACCCCGACGTTGGCTGCGGCGCCACCTC
CGGGGCGCCCCTCCTTTAGTCCCCCGGCCCGCCCTATCTCACCCCGTCCG
ACATATCGCGCCAGTGCCTCTCCGGCCATTGCTAGTATCATTGATCCGCC
TGCTGCCTCGTCGCCGCCCGTCTATGTCCCTCGACCGTATGGCTCTCCGA
TTCACGGTGCGTCGAGCTACTCTCCATCGCCCGCGGGCGCATCCATCGCT
CCCACTCCGCCACAACCGCAACCACAACCACAGCCTCAATCTCAACCCCC
ACGACCGGTCTCACCATATGCTCATCGATCCCCCTATGCCACACCGGTCC
AAGCACCACCCCCGCCGCCGCCTCAGGAATCACGGACATCTGCACCAGAG
CCACAACCCCCGTCTGTCCCTCCTCCTTCGGCCTCGGAACCTCATACCCC
AGCACCTTCTAATAACCGACCGCCCTCGCCGGGTCCCACGCCCATGGATG
TGGAGCCCGAGGCACCTGCTGCGTCGACGGCCCCTAAGGTGACCAAGAAG
GAAGCCAAAACCCCCTCAACAGTACCTACTTCGAAGGCGCCGTCACCCAA
ACCGGCCCGGGCCGCCAAGGAAACGCCTTCGCTACCTCAAGGCTCGGGAT
TGATCTCCAATGCCCTCTTCGGAGTGGATGGTGGCTCCTCCACGGGCGAC
TCGAGTAACCGCCAGGTGCCGAGTATCATCCTACACGTCCCTATTCAGGG
TCACGGGAATCAGATCATCAACTTCGCCCGTTTAGCGGAGGAGCAATATG
GGTTTGCGGCCCTGCATCCTCGCCTCGCTGCGCACAAGGAACGGCTGGCA
CGGGTAGCTGCGGCTGGAGCGGCCTTGGAGCGCAACGACAAGGCGAGCGG
ACGTGGTCTGTCTGCGGGAGAGAGTGCAGATGAGGATTTGAGCATGGAGG
TCGACCGGGACAGCGAGATGGATGGGGAAGGTGCGACTTCCGCACCAGCC
CGCTCGAATGGGCCTGACCCGGCAGATGGGAAGAAGAAGCGTCGTAAGAA
GAAAATGGAGGAGTATGATCGAGACGACCCGTTCGTGGATGACAGTGAGT
TAGCCTGGCAGGAACAGGCGGCCGCCAGTAAGGACGGGTTCTTTGTTTAC
AGTGGGCCGCTGGTGCCGGAGGGTGAAAAGGTCCAAGTGGAACGGGCCGA
CGGTACGATCAAGCGTGGTCGCGGCCGTGGACGTGGGAGTCGGGGCCGGG
CGCCTCTGACATCCCACCAGGTGCCTTTGGCCGCTGCGGTTCCAATCTCC
CAGGAAACCGGTCTTCCCCTTCGGGGCCCCGGCTCACGAGGAGGCAGTAC
TACTCGTCGCCCGCGCATCAGCAAAGCTGCTCGTCAGCAGGCAGAGCAGG
AGAAAGCCAACGCCGCATCGGGGACCCCCCACGGACGCGGTGGAGGTGCT
GCCGGTCGTGGCGGTTCGACCAGCAGTCGAGGAGGCAAGCACCCCATGGT
CGAGTTGGCGCCGCGTCCAAATATTGCCCCTGCTCCTCCGGGCCCGAGTC
CAGTGAGTGGATCAGAGCTTGCGATGAAGTAGATGTCCACAGAGCCATCT
GTTTTGTCGACTGCAGGTGAACACGAGTCGCGTTCCGCCATCGAATATCC
CGCCCGCGAAACTCGTACCCGACGGTCGCGTCGCAGGAAGGAAGACGATC
TCGACCTCGAGCGGAAAGAACCCGTCCGAACGCCTAAAACCAGAGAAAAA
GAAAAGGAGAAGGAGAAAGAATTGAAGGAAAAGGAAAAAGAGAAGGAGAA
GGAGAAGGAGGAAAAGCTGGAGCCCAAACGGGGCAGCCGTCGCCAACGAG
AGAAGTCCTCGTCGACATCTACTAACCCGCCCAATTCGGCCGCGTCTCAC
TCTCGCAAGAGGCCCAAGTTGGAGGCTGCCACCCCCGACCAAAGTCCCAG
TGTCGCGGCGCCTCCTGCCCGTTCACCGAATCCCGCGCCTGCTGCCGCTC
CAGAAGGGCCTGCGACCAGTCCTCCTACCACTGCAGTTTCGGCTGCATCT
GCAGCTCCGGCCCCAGCCCCGGCTCCAGCTCCAGCTCCAGCTCCAGCTCT
AGCCCCGGCCTCGACGCCTGCCCCAAGCACTCCCATAACGAGCCCGCGGA
AACAAACACTAGATTCTGAAGTGATGTCTCATGGGACATCGCGTCTCCTG
AACCCTCCGTCTTTGCCACCCTCGGCCCATCCAACACCGCCATCCGTGGC
CCCTACAACTCTCGTCTCACCTTATCCGGGCCTGATGCCCTCCGCTCCTC
CTCCGCGGCCACACTCCCAGCCGCCCGCTCCTCCGCCGCAAAGAACCAGC
GGTCAAAATTTCGATCCCATTCGGTCGGCCTTCGATACATCGTCTCCGGC
CCCAGCCCCAGCACCGACCCCGACGTTGGCTGCGGCGCCACCTCCGGGGC
GCCCCTCCTTTAGTCCCCCGGCCCGCCCTATCTCACCCCGTCCGACATAT
CGCGCCAGTGCCTCTCCGGCCATTGCTAGTATCATTGATCCGCCTGCTGC
CTCGTCGCCGCCCGTCTATGTCCCTCGACCGTATGGCTCTCCGATTCACG
GTGCGTCGAGCTACTCTCCATCGCCCGCGGGCGCATCCATCGCTCCCACT
CCGCCACAACCGCAACCACAACCACAGCCTCAATCTCAACCCCCACGACC
GGTCTCACCATATGCTCATCGATCCCCCTATGCCACACCGGTCCAAGCAC
CACCCCCGCCGCCGCCTCAGGAATCACGGACATCTGCACCAGAGCCACAA
CCCCCGTCTGTCCCTCCTCCTTCGGCCTCGGAACCTCATACCCCAGCACC
TTCTAATAACCGACCGCCCTCGCCGGGTCCCACGCCCATGGATGTGGAGC
CCGAGGCACCTGCTGCGTCGACGGCCCCTAAGGTGACCAAGAAGGAAGCC
AAAACCCCCTCAACAGTACCTACTTCGAAGGCGCCGTCACCCAAACCGGC
CCGGGCCGCCAAGGAAACGCCTTCGCTACCTCAAGGCTCGGGATTGATCT
CCAATGCCCTCTTCGGAGTGGATGGTGGCTCCTCCACGGGCGACTCGAGT
AACCGCCAGGTGCCGAGTATCATCCTACACGTCCCTATTCAGGGTCACGG
GAATCAGATCATCAACTTCGCCCGTTTAGCGGAGGAGCAATATGGGTTTG
CGGCCCTGCATCCTCGCCTCGCTGCGCACAAGGAACGGCTGGCACGGGTA
GCTGCGGCTGGAGCGGCCTTGGAGCGCAACGACAAGGCGAGCGGACGTGG
TCTGTCTGCGGGAGAGAGTGCAGATGAGGATTTGAGCATGGAGGTCGACC
GGGACAGCGAGATGGATGGGGAAGGTGCGACTTCCGCACCAGCCCGCTCG
AATGGGCCTGACCCGGCAGATGGGAAGAAGAAGCGTCGTAAGAAGAAAAT
GGAGGAGTATGATCGAGACGACCCGTTCGTGGATGACAGTGAGTTAGCCT
GGCAGGAACAGGCGGCCGCCAGTAAGGACGGGTTCTTTGTTTACAGTGGG
CCGCTGGTGCCGGAGGGTGAAAAGGTCCAAGTGGAACG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001988-T1.utr3p1 | KJC3_001988-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_001988-T1.utr5p1 | KJC3_001988-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR014840 |
| DBxref | PFAM:PF08729 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1360887..1364786 - |
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