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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1488677..1489918- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002032-T1 ID=KJC3_002032-T1|Name=KJC3_002032-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1242bp|location=Sequence derived from alignment at ch2:1488677..1489918- (Aspergillus niger KJC3)
TCATTCCAGCACCAACAACCCCCCAATCGGCTTGAACACTATCCAACCAA
GCCAACATGTTTCCCACGGCCCGATGCCTAGCTGCAAAGCCATCCGGCTT
CCTCAAACGCAGCGTCGAGGAATTCGGTCGTCTGTCCCGGATCGGTGCGC
TCCTCTCCACATACACTAACCAAACTATCGATAAACTGATTGATAAATAT
TTCCAATGACCAGCCTGGAACAGCGAAGCCCTCCACACCCCAACCAAGCC
CTACGTCCTCCTCGACTTCGAAGATGAGTCGTCCGTCGCCGGCTGCAAGA
CCATGGCCGACCGCGTCGTCGGAGGGTACAGCACCGCCAGTCTCGACTAC
GTCCCTGCCGACGCGGCCACGAACAGTCCGGCACATGCTCGATTCCATGG
AAGTATCTCCACTAAGCTTCCTAAGAACTGGCGCGTTGAGCGAACAGGTA
CATACCTCCCCATCCCTCCACCTTCTTCTATACTAAGATTAATCCGTACT
GATGGCATTCTTGGTAATAGGCTACGCCGCCTTCCGCAACCACGACCGCG
GCCTCTGGCTCTTCGGTCGCCTCTACTGGGACGTCGACCCATACACGTAC
CTCGCACTACGAGTGAAGTCCGACGGCCGTCGATACACCGTCAACATCCA
GACGGACTCCATCGTCGACACCGATATCCACCAACACCGTCTATACACGC
GGCATCATCGTGTGCAGTCCTCCTTCTCTACCTCGCACGCCGACTCCTCC
GATCTAGCGGACCAGCTGTACCCCAATGGCAGCATCCCGGCCGCCTTGTC
TGATATCCCGCCCGAGAGCATCGTTATGGGTAGTGGTAGTTCGAGTGCCA
CGACTTCTGGAGGCACGGGATGGGAGACGATCCTGTTGCCGTTCAACTCG
TTTGTGCGCACGAATCACGGTATGGTGGTTGAGCCACAGACGTCGATCAT
TCGGCAGAGGATTAAGAGTGTGGGCATTGGGTTGACAGATCGTGTGGAGG
GGCCGTACGATTTGAGGATTCAGAAGATTTGGGCGACGAATGGTATGAGT
GAGGCGGAGATTGAGGAGGAGAGGAGGATTTGTGGGGCGGATGCGTTGCC
TGTTGATGAGGGGGTGAAGACGGGCTGGACCGGTGAGGTGGCTGGTAAGG
GACAGAGTCAGAGGGAGAGTGTGAAGGAGACGGCGCAGGGAGAGCCCAAG
GCGAAGGGGTTGAAGGGGTTGAAGGATGAGTGGGAGGCGTAG back to topCoding sequence (CDS) from alignment at ch2:1488677..1489918- >KJC3_002032-T1 ID=KJC3_002032-T1|Name=KJC3_002032-T1|organism=Aspergillus niger KJC3|type=CDS|length=3132bp|location=Sequence derived from alignment at ch2:1488677..1489918- (Aspergillus niger KJC3)
GCTACGCCGCCTTCCGCAACCACGACCGCGGCCTCTGGCTCTTCGGTCGC
CTCTACTGGGACGTCGACCCATACACGTACCTCGCACTACGAGTGAAGTC
CGACGGCCGTCGATACACCGTCAACATCCAGACGGACTCCATCGTCGACA
CCGATATCCACCAACACCGTCTATACACGCGGCATCATCGTGTGCAGTCC
TCCTTCTCTACCTCGCACGCCGACTCCTCCGATCTAGCGGACCAGCTGTA
CCCCAATGGCAGCATCCCGGCCGCCTTGTCTGATATCCCGCCCGAGAGCA
TCGTTATGGGTAGTGGTAGTTCGAGTGCCACGACTTCTGGAGGCACGGGA
TGGGAGACGATCCTGTTGCCGTTCAACTCGTTTGTGCGCACGAATCACGG
TATGGTGGTTGAGCCACAGACGTCGATCATTCGGCAGAGGATTAAGAGTG
TGGGCATTGGGTTGACAGATCGTGTGGAGGGGCCGTACGATTTGAGGATT
CAGAAGATTTGGGCGACGAATGGTATGAGTGAGGCGGAGATTGAGGAGGA
GAGGAGGATTTGTGGGGCGGATGCGTTGCCTGTTGATGAGGGGGTGAAGA
CGGGCTGGACCGGTGAGGTGGCTGGTAAGGGACAGAGTCAGAGGGAGAGT
GTGAAGGAGACGGCGCAGGGAGAGCCCAAGGCGAAGGGGTTGAAGGGGTT
GAAGGATGAGTGGGAGGCGTAGCCTGGAACAGCGAAGCCCTCCACACCCC
AACCAAGCCCTACGTCCTCCTCGACTTCGAAGATGAGTCGTCCGTCGCCG
GCTGCAAGACCATGGCCGACCGCGTCGTCGGAGGGTACAGCACCGCCAGT
CTCGACTACGTCCCTGCCGACGCGGCCACGAACAGTCCGGCACATGCTCG
ATTCCATGGAAGTATCTCCACTAAGCTTCCTAAGAACTGGCGCGTTGAGC
GAACAGATGTTTCCCACGGCCCGATGCCTAGCTGCAAAGCCATCCGGCTT
CCTCAAACGCAGCGTCGAGGAATTCGGTCGTCTGTCCCGGATCGGCTACG
CCGCCTTCCGCAACCACGACCGCGGCCTCTGGCTCTTCGGTCGCCTCTAC
TGGGACGTCGACCCATACACGTACCTCGCACTACGAGTGAAGTCCGACGG
CCGTCGATACACCGTCAACATCCAGACGGACTCCATCGTCGACACCGATA
TCCACCAACACCGTCTATACACGCGGCATCATCGTGTGCAGTCCTCCTTC
TCTACCTCGCACGCCGACTCCTCCGATCTAGCGGACCAGCTGTACCCCAA
TGGCAGCATCCCGGCCGCCTTGTCTGATATCCCGCCCGAGAGCATCGTTA
TGGGTAGTGGTAGTTCGAGTGCCACGACTTCTGGAGGCACGGGATGGGAG
ACGATCCTGTTGCCGTTCAACTCGTTTGTGCGCACGAATCACGGTATGGT
GGTTGAGCCACAGACGTCGATCATTCGGCAGAGGATTAAGAGTGTGGGCA
TTGGGTTGACAGATCGTGTGGAGGGGCCGTACGATTTGAGGATTCAGAAG
ATTTGGGCGACGAATGGTATGAGTGAGGCGGAGATTGAGGAGGAGAGGAG
GATTTGTGGGGCGGATGCGTTGCCTGTTGATGAGGGGGTGAAGACGGGCT
GGACCGGTGAGGTGGCTGGTAAGGGACAGAGTCAGAGGGAGAGTGTGAAG
GAGACGGCGCAGGGAGAGCCCAAGGCGAAGGGGTTGAAGGGGTTGAAGGA
TGAGTGGGAGGCGTAGCCTGGAACAGCGAAGCCCTCCACACCCCAACCAA
GCCCTACGTCCTCCTCGACTTCGAAGATGAGTCGTCCGTCGCCGGCTGCA
AGACCATGGCCGACCGCGTCGTCGGAGGGTACAGCACCGCCAGTCTCGAC
TACGTCCCTGCCGACGCGGCCACGAACAGTCCGGCACATGCTCGATTCCA
TGGAAGTATCTCCACTAAGCTTCCTAAGAACTGGCGCGTTGAGCGAACAG
ATGTTTCCCACGGCCCGATGCCTAGCTGCAAAGCCATCCGGCTTCCTCAA
ACGCAGCGTCGAGGAATTCGGTCGTCTGTCCCGGATCGGCTACGCCGCCT
TCCGCAACCACGACCGCGGCCTCTGGCTCTTCGGTCGCCTCTACTGGGAC
GTCGACCCATACACGTACCTCGCACTACGAGTGAAGTCCGACGGCCGTCG
ATACACCGTCAACATCCAGACGGACTCCATCGTCGACACCGATATCCACC
AACACCGTCTATACACGCGGCATCATCGTGTGCAGTCCTCCTTCTCTACC
TCGCACGCCGACTCCTCCGATCTAGCGGACCAGCTGTACCCCAATGGCAG
CATCCCGGCCGCCTTGTCTGATATCCCGCCCGAGAGCATCGTTATGGGTA
GTGGTAGTTCGAGTGCCACGACTTCTGGAGGCACGGGATGGGAGACGATC
CTGTTGCCGTTCAACTCGTTTGTGCGCACGAATCACGGTATGGTGGTTGA
GCCACAGACGTCGATCATTCGGCAGAGGATTAAGAGTGTGGGCATTGGGT
TGACAGATCGTGTGGAGGGGCCGTACGATTTGAGGATTCAGAAGATTTGG
GCGACGAATGGTATGAGTGAGGCGGAGATTGAGGAGGAGAGGAGGATTTG
TGGGGCGGATGCGTTGCCTGTTGATGAGGGGGTGAAGACGGGCTGGACCG
GTGAGGTGGCTGGTAAGGGACAGAGTCAGAGGGAGAGTGTGAAGGAGACG
GCGCAGGGAGAGCCCAAGGCGAAGGGGTTGAAGGGGTTGAAGGATGAGTG
GGAGGCGTAGCCTGGAACAGCGAAGCCCTCCACACCCCAACCAAGCCCTA
CGTCCTCCTCGACTTCGAAGATGAGTCGTCCGTCGCCGGCTGCAAGACCA
TGGCCGACCGCGTCGTCGGAGGGTACAGCACCGCCAGTCTCGACTACGTC
CCTGCCGACGCGGCCACGAACAGTCCGGCACATGCTCGATTCCATGGAAG
TATCTCCACTAAGCTTCCTAAGAACTGGCGCGTTGAGCGAACAGATGTTT
CCCACGGCCCGATGCCTAGCTGCAAAGCCATCCGGCTTCCTCAAACGCAG
CGTCGAGGAATTCGGTCGTCTGTCCCGGATCG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002032-T1.utr5p1 | KJC3_002032-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR008979 |
| DBxref | InterPro:IPR013857 |
| DBxref | PFAM:PF08547 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1488677..1489918 - |
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