You are here

Home

KJC3_002053-T1, KJC3_002053-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002053-T1
Unique NameKJC3_002053-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:1541131..1542119-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002053-T1 ID=KJC3_002053-T1|Name=KJC3_002053-T1|organism=Aspergillus niger KJC3|type=mRNA|length=989bp|location=Sequence derived from alignment at ch2:1541131..1542119- (Aspergillus niger KJC3)
AATCTCCCCGCTTCGGCATCGGCCTGCAATTCAGTCTGTCCGAGTTCCAT
CCCGTCACTTTTTACCCCGCATCGCTTTCAGAATCCTCCTGGTTCCTCGA
ATCTTGCATACATAGCACAATCAGCAGCCATGGCCGACGCAGAGCTTGAA
GAGGTCAGTATGAACCTTCCCACCTACGTTCAACTTTCCCAGTCTTCCAT
GGACATTCATGCTTGTTGAATCTCCTTCGGGTCCACACCTTCGACACTTC
TCGTATCAAATGCTTAAATGTGGTATAGATCAGACGGGCCCGTCTTGCCC
AGCTTCAGCAACAGGGTGGTGGCGCACGTGGTGGCCCTTCGGACGGCAAC
CAGGAGGAACAGAGAAGGTATGCTTCCCAGATGTTGTTTTTGCTTCTGCG
CTTGTAAATCCTTACTGACTTGTCGCTCCACTTTAGGCAAGCTGAAGGTA
TGCGCAATCTCATAACCCATTAGAATAGGACATGCTGGAGGAATCTCTCT
GCCTACATCGCTCTCTCTCAAACAATTTGCTTATTCTTTCACAAATAGCC
GACCGCCGCGCCACTATCCTGAACCAGATCCTCGAGCCCGAAGCCGCCGA
TCGTTTGGGTCGCATCCGCCTTGTTAAGGAATCCCGCGCTGCTGACGTCG
AATCCCGTCTCATCATGCTCGCCCAGTCCGGTCAATTGCGCCAGAAGGTC
ACCGAGGACCAGCTCAAGCAGCTGCTGAACGCCATGGCCGAGAACCAGCG
CAAGGATGAGGAGGAGCACAAAATTGTAATCAACCGACGCGGCGGCTGGG
ATGATGATGACGACCTGTTGGATCTGTGAGATGTGTTTTTAGCGAAGGGT
GTTCGGTTTGTGCTGAATGCTTGCCATTTTCAATGATACCTCCAGCTCTC
CGATTGCAGAGCAGCTTTGCGGCGCAGCTGTTCTGCCATGAAAAGTACAG
TTTCTCCATCTCGATAGTCGAGCAGCAGCTCCTAATAAT
back to top

Coding sequence (CDS) from alignment at ch2:1541131..1542119-

>KJC3_002053-T1 ID=KJC3_002053-T1|Name=KJC3_002053-T1|organism=Aspergillus niger KJC3|type=CDS|length=348bp|location=Sequence derived from alignment at ch2:1541131..1542119- (Aspergillus niger KJC3)
ATGCTGGAGGAATCTCTCTGCCTACATCGCTCTCTCTCAAACAATTTGCT
TATTCTTTCACAAATAGCCGACCGCCGCGCCACTATCCTGAACCAGATCC
TCGAGCCCGAAGCCGCCGATCGTTTGGGTCGCATCCGCCTTGTTAAGGAA
TCCCGCGCTGCTGACGTCGAATCCCGTCTCATCATGCTCGCCCAGTCCGG
TCAATTGCGCCAGAAGGTCACCGAGGACCAGCTCAAGCAGCTGCTGAACG
CCATGGCCGAGAACCAGCGCAAGGATGAGGAGGAGCACAAAATTGTAATC
AACCGACGCGGCGGCTGGGATGATGATGACGACCTGTTGGATCTGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002053KJC3_002053Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002053-T1KJC3_002053-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002053-T1.cdsKJC3_002053-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002053-T1.utr3p1KJC3_002053-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002053-T1.exon3KJC3_002053-T1.exon3Aspergillus niger KJC3exon
KJC3_002053-T1.exon2KJC3_002053-T1.exon2Aspergillus niger KJC3exon
KJC3_002053-T1.exon1KJC3_002053-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002053-T1.utr5p3KJC3_002053-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_002053-T1.utr5p2KJC3_002053-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_002053-T1.utr5p1KJC3_002053-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036883
DBxrefInterPro:IPR002836
DBxrefPFAM:PF01984
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:1541131..1542119 -
Powered by Drupal