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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1806316..1808347+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002147-T1 ID=KJC3_002147-T1|Name=KJC3_002147-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2032bp|location=Sequence derived from alignment at ch2:1806316..1808347+ (Aspergillus niger KJC3)
ATCGAGCTCCTCAGTTTCTCCAGCTACTAAGTAGGAAAAGAAAAGTACAG
TCTTCTGACCAATGGAAGGCCTCATCCGCAATAGCACAGCCGGCCAGCTG
CTGCGCTGGATCACCAGGAATAAAGTTCTACTGCACCCTGAGGAACGTCC
GGATTTCCAATGTCCTCATTGCTACGCCGACAAAGCCGCCTCCCCGACAC
TGTTCGCTCATGAAGCAGATGGCGAGCAGACCCCGAAGCCCGAATCCGAC
CCGGAGGGTGAACAACGCGAAGATGCGACAGACAATGTCTCTCGATCCGA
AACTCGAGACGGAGAAACATTGGGCGCATCCGAATTGTCCCGCGTGCCTT
CGATGGCGGACGTGGAAAAGGTCCAGACCCAATCGGACCTGGCACGTATC
TATACGGCTGCCACACAGACAGAGACACTGCAGAAGGCTCCTAGCCGACC
CATCGCACCCACCAAAACTGCTGATGGTACAATCCTAGTCGACTGGTATA
CTACGCGCGATCCAGAGAATCCCCAAAACTGGTCTATCGGCAAGAAGTTA
GCCGTTGTCTCCCAGATCTATCTCTACACCTTAGTCGTCTATATGGGCTC
GTCCATCTACACTCCCAGCGCACCTCAGATTCAAGAACGCTTCGGGGTCT
CCTCGACAGCCGCATCGTTGGGCCTGGCTTTGTATGTCCTTGGGTACGGC
ATCGGCCCCATGATCTTCTCCCCACTTAGCGAGATCCCCAGCGTCGGCCG
TAACCCGCCATACATCATCACCTTTCTTCTCTTCATCCTGTTCAGCATTG
GTGCTGCAGTCGTCAACACATTCGGAGGTCTCCTCGTCCTCCGGTTTCTC
CAGGGCTTCTTCGGCAGTCCATGCCTCGCAACAGGCGGTGCCAGCATCGG
CGATGTATTCAGTCTCCTGAAGCTACCTTACGGTCTCTCCGCATGGGCTG
CCTTTGCCACTTTGGGCCCAGCCCTGGGACCCGTCATCTCGGGCTTCAGT
GTCCCCGTCGAGGGCTGGCGCTGGTCACTGTGGGAGACAGTCTGGATGTC
TTCCCCTATCCTGGTTGTCATGTTCTTCTTCCTCCCCGAAACCTTCCCGG
ACTCCATCCTCCTCCAACGCGCACGACGCCTCCGTCGACTGACCGGCAAC
GACAAACTCCTCTCCCAGTCAGAAATCAACCAGAAGAAGCTCACCTTCAC
CGCAGTGGCCATGGAAGCGCTCTACCGGCCCCTCCAGATTGTGGTCCTCG
ACCCTGCCATTCTCTTCGTCAACATCTACACCAGTCTCATCTACGGCATC
TACTACTCGTTCTTTGAAGTCTTTCCCATTGTCTACATCGACATGTACCA
CTTCAACCTCGGCCAAATGGGTCTCGTCTTCCTCAGCATTGCAGTGGCCC
TCGCCATAGCCGTCCCCGCCTACTTTATCTACCTGAATAAAGTCTTCGAG
CCCGAGATCCGAACCCAGGGTCTGCAGTCCCCCGAGCGACGCCTCATCCC
CGCCCTCTTCGCCTGTTTCCTGCCTCCGATCGGGCTCTTCCTCTTCGGAT
GGACCTCCCGCACCTCAGTGCACTGGATAGTCTCAGTAATTGGAATCTTG
ATCTATACTATTGGCATCTACGTGGTCATCCAGTGCATCTTCATCTACAT
CCCCATGACGTACCCACAGTACGCGGCGAGCCTGTTTGCAGGGAATGACC
TCATGCGGAGTGCGCTGGCATGTGGTGCGGTGCTGTTTGCACGTCCCCTG
TATGTGAATCTGGGGGTTGGGCCTGGGATCAGTCTGCTGGCGGGGTTGAC
GGTGGGTTGTATTGCGGGGATGTTTGCGCTGTATCACTTTGGGGCGGCGC
TGAGGGCGAGGAGTAGGTTTACGGCGAAGTAGATTGGTGGTTGTGTTTGA
GCGATCGGAATTTCGTCGACTTTGGGGTTTGCTTTAGCATTTAGCTTGTT
TTTATGGTATATGATAGTAGTGCTAGTAATAATAATAATGTTGTTTCTTG
GCCAGTTTAGCGTGCTAATGTACTTGCTTAGT back to topCoding sequence (CDS) from alignment at ch2:1806316..1808347+ >KJC3_002147-T1 ID=KJC3_002147-T1|Name=KJC3_002147-T1|organism=Aspergillus niger KJC3|type=CDS|length=1821bp|location=Sequence derived from alignment at ch2:1806316..1808347+ (Aspergillus niger KJC3)
ATGGAAGGCCTCATCCGCAATAGCACAGCCGGCCAGCTGCTGCGCTGGAT
CACCAGGAATAAAGTTCTACTGCACCCTGAGGAACGTCCGGATTTCCAAT
GTCCTCATTGCTACGCCGACAAAGCCGCCTCCCCGACACTGTTCGCTCAT
GAAGCAGATGGCGAGCAGACCCCGAAGCCCGAATCCGACCCGGAGGGTGA
ACAACGCGAAGATGCGACAGACAATGTCTCTCGATCCGAAACTCGAGACG
GAGAAACATTGGGCGCATCCGAATTGTCCCGCGTGCCTTCGATGGCGGAC
GTGGAAAAGGTCCAGACCCAATCGGACCTGGCACGTATCTATACGGCTGC
CACACAGACAGAGACACTGCAGAAGGCTCCTAGCCGACCCATCGCACCCA
CCAAAACTGCTGATGGTACAATCCTAGTCGACTGGTATACTACGCGCGAT
CCAGAGAATCCCCAAAACTGGTCTATCGGCAAGAAGTTAGCCGTTGTCTC
CCAGATCTATCTCTACACCTTAGTCGTCTATATGGGCTCGTCCATCTACA
CTCCCAGCGCACCTCAGATTCAAGAACGCTTCGGGGTCTCCTCGACAGCC
GCATCGTTGGGCCTGGCTTTGTATGTCCTTGGGTACGGCATCGGCCCCAT
GATCTTCTCCCCACTTAGCGAGATCCCCAGCGTCGGCCGTAACCCGCCAT
ACATCATCACCTTTCTTCTCTTCATCCTGTTCAGCATTGGTGCTGCAGTC
GTCAACACATTCGGAGGTCTCCTCGTCCTCCGGTTTCTCCAGGGCTTCTT
CGGCAGTCCATGCCTCGCAACAGGCGGTGCCAGCATCGGCGATGTATTCA
GTCTCCTGAAGCTACCTTACGGTCTCTCCGCATGGGCTGCCTTTGCCACT
TTGGGCCCAGCCCTGGGACCCGTCATCTCGGGCTTCAGTGTCCCCGTCGA
GGGCTGGCGCTGGTCACTGTGGGAGACAGTCTGGATGTCTTCCCCTATCC
TGGTTGTCATGTTCTTCTTCCTCCCCGAAACCTTCCCGGACTCCATCCTC
CTCCAACGCGCACGACGCCTCCGTCGACTGACCGGCAACGACAAACTCCT
CTCCCAGTCAGAAATCAACCAGAAGAAGCTCACCTTCACCGCAGTGGCCA
TGGAAGCGCTCTACCGGCCCCTCCAGATTGTGGTCCTCGACCCTGCCATT
CTCTTCGTCAACATCTACACCAGTCTCATCTACGGCATCTACTACTCGTT
CTTTGAAGTCTTTCCCATTGTCTACATCGACATGTACCACTTCAACCTCG
GCCAAATGGGTCTCGTCTTCCTCAGCATTGCAGTGGCCCTCGCCATAGCC
GTCCCCGCCTACTTTATCTACCTGAATAAAGTCTTCGAGCCCGAGATCCG
AACCCAGGGTCTGCAGTCCCCCGAGCGACGCCTCATCCCCGCCCTCTTCG
CCTGTTTCCTGCCTCCGATCGGGCTCTTCCTCTTCGGATGGACCTCCCGC
ACCTCAGTGCACTGGATAGTCTCAGTAATTGGAATCTTGATCTATACTAT
TGGCATCTACGTGGTCATCCAGTGCATCTTCATCTACATCCCCATGACGT
ACCCACAGTACGCGGCGAGCCTGTTTGCAGGGAATGACCTCATGCGGAGT
GCGCTGGCATGTGGTGCGGTGCTGTTTGCACGTCCCCTGTATGTGAATCT
GGGGGTTGGGCCTGGGATCAGTCTGCTGGCGGGGTTGACGGTGGGTTGTA
TTGCGGGGATGTTTGCGCTGTATCACTTTGGGGCGGCGCTGAGGGCGAGG
AGTAGGTTTACGGCGAAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002147-T1.utr5p1 | KJC3_002147-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002147-T1.utr3p1 | KJC3_002147-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1806316..1808347 + |
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