KJC3_002162-T1, KJC3_002162-T1 (mRNA) Aspergillus niger KJC3

Overview


Name	KJC3_002162-T1
Unique Name	KJC3_002162-T1
Type	mRNA
Organism	Aspergillus niger KJC3

Sequences

The following sequences are available for this feature:

mRNA from alignment at ch2:1844204..1846086+
coding sequence from alignment at ch2:1844204..1846086+

mRNA from alignment at ch2:1844204..1846086+

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KJC3_002162-T1 ID=KJC3_002162-T1|Name=KJC3_002162-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1883bp|location=Sequence derived from alignment at ch2:1844204..1846086+ (Aspergillus niger KJC3)
CAGGCAGCCATTATTCGCCTCTCGCCTACGTCACACTATTCGAACAGGAA
TTCTGCGAAACGCCGTCGACTTTCCATCTCCAGGACAGGTTTAGGTCAGC
ACCGTTTTTTGCTCTGGGATCAGCCAGGTATTTTTGGCCGACATCGCTTT
GACTCCATGGTTCACCTATTGTCGCAGACCAACGTGACAAATTGACAGGG
CGATATTGTGTGTTATGATGCTGCATCAAAATAATCAACTTGTCCAGGGC
CCTTTCCTGAGATCTGGTGCACGGTTGAGAACGAGAAGTGGTTGTGGCGA
ATGTACGAGCCCAAACAAAACCGTTCAGTTGTCGCGCCTAAACTCGCAAG
CGCACTGCTTGTTAACAAACAACATGTAGGTCGGCGACGTCGAAAGAAGT
GTGATGAAAAACGGCCCAGATGCGGAGGCTGTAGTCGAAATGATTTCGAA
TGTCAATGGCCCAGCGAGGTCCAGACTGTTGACCGACGAAGGTATCGGAA
AACTTCAGACTCCCGGAGAGAGATGTCTTCCCTGGCTCTAGGAACAGCCC
TCCCCAGTGCAGACGACGGAGCTCAACCAGGAACCACGGTTATGGCGTCT
GACCTCCGTCCGGGGTGGTCCCTTCCACCCCCTGTAAGCATGCCCGCGCC
ATTTCACAAGAATGAGCATCTGCGTATATACCGGTATTTCGCGCACTCCA
TAGCACCAAAACTTGTTCGACAGACCTCGTTATCCAGGTATTCCCAAGAC
TTACACATCACCCGCCTTGCCCTTGTTCACCCACTTCTCATGGGTGTCCT
CATTGCTATTGCTGGAATGGAGATGTCATTGCAGTCATCCAATCTCCATT
CGCTGGCTCTACAAAGTTACCTATTTGCCATAACTAGCATCAAGACGGGT
CTGATGGAGGGACGGCATACTGGTACTGAGGATTGGCTTCTGGCCACCAC
GACCTTCTTGTGTCTTTTTGAAGTAGGTGCCTCACTTCCCATGCTAACCC
CTTGCTGCTCTCAGTTCCCCAGCTGAACCTTATATCAAAGAACTCTCGCC
GCGATGCGATGCCAAATGCCCTGTCTCATGTGTTGGCATCAGGCCAGATG
TTGTCCCTTCGTAGGCCAAAACCCCGAAACGCCTCACAGGAGGTCATTGT
CTTCGAACGCATTTGTGTAGAATCATTTTTGTACCACGCCGCTCTACTCA
CACTGTTTGATTCTTCAGTCAACTGCCTGCCTCTTATCAAGGGGGGTTTA
AATCTGGAGGGCTATTTTGCAGACCCGGATCACCCGAACGATGTCCCGCC
AGGGACCTTAACGTCAACCCAGCCGGTTCTAGATGCGTCTTATGAATTCT
TTCTTTTGGTTCACGATGTTACAAAGCTCGCTCAATCGTGTCCCCTGACC
ACCAGTACTGAATTTGACATGTGGTCTCGAGCACAAGACATGGTTGTTCA
TTGGGAGAAGGCGATTGACAACCAACAGACGCCCATGTCAGAGAATCACG
TGGGACGACTCTATACTGTGGCAATGCGAATTCTACTTGTACACGCAGAT
CCCAGGCGCTCCATGTCCGACTGGGTTCAGTTGTTAGAATTATACCTTTT
ACGTGGCCTTGAAATCATTACAGCATTGGTTGTTGACGAGTGCTTTTCAT
TTTACTACCTGTGGCCGCTATTAGCGGTGGGCTCAGTAGCCGTCCTACCG
GGCGAGAAGCAGATCGTCCGAGCCAAGCTTGCTCAGGTTTCAGTCTTACG
GCAGGGAGGTCCCGTCAATCTGGCGCATTATCGCCTGCAGAAAGTCTGGA
GGTCAGGTGCTCGGTATACTGACTCTGATCGTGGACAGGTTGTTTCAAGG
CAGCTTCGGACCTTGCTAAAAGAAGATCGATAG

Coding sequence (CDS) from alignment at ch2:1844204..1846086+

>KJC3_002162-T1 ID=KJC3_002162-T1|Name=KJC3_002162-T1|organism=Aspergillus niger KJC3|type=CDS|length=4572bp|location=Sequence derived from alignment at ch2:1844204..1846086+ (Aspergillus niger KJC3)
ATGATGCTGCATCAAAATAATCAACTTGTCCAGGGCCCTTTCCTGAGATC
TGGTGCACGGTTGAGAACGAGAAGTGGTTGTGGCGAATGTCGGCGACGTC
GAAAGAAGTGTGATGAAAAACGGCCCAGATGCGGAGGCTGTAGTCGAAAT
GATTTCGAATGTCAATGGCCCAGCGAGGTCCAGACTGTTGACCGACGAAG
GTATCGGAAAACTTCAGACTCCCGGAGAGAGATGTCTTCCCTGGCTCTAG
GAACAGCCCTCCCCAGTGCAGACGACGGAGCTCAACCAGGAACCACGGTT
ATGGCGTCTGACCTCCGTCCGGGGTGGTCCCTTCCACCCCCTGTAAGCAT
GCCCGCGCCATTTCACAAGAATGAGCATCTGCGTATATACCGGTATTTCG
CGCACTCCATAGCACCAAAACTTGTTCGACAGACCTCGTTATCCAGGTAT
TCCCAAGACTTACACATCACCCGCCTTGCCCTTGTTCACCCACTTCTCAT
GGGTGTCCTCATTGCTATTGCTGGAATGGAGATGTCATTGCAGTCATCCA
ATCTCCATTCGCTGGCTCTACAAAGTTACCTATTTGCCATAACTAGCATC
AAGACGGGTCTGATGGAGGGACGGCATACTGGTACTGAGGATTGGCTTCT
GGCCACCACGACCTTCTTGTGTCTTTTTGAAAACTCTCGCCGCGATGCGA
TGCCAAATGCCCTGTCTCATGTGTTGGCATCAGGCCAGATGTTGTCCCTT
CGTAGGCCAAAACCCCGAAACGCCTCACAGGAGGTCATTGTCTTCGAACG
CATTTGTGTAGAATCATTTTTGTACCACGCCGCTCTACTCACACTGTTTG
ATTCTTCAGTCAACTGCCTGCCTCTTATCAAGGGGGGTTTAAATCTGGAG
GGCTATTTTGCAGACCCGGATCACCCGAACGATGTCCCGCCAGGGACCTT
AACGTCAACCCAGCCGGTTCTAGATGCGTCTTATGAATTCTTTCTTTTGG
TTCACGATGTTACAAAGCTCGCTCAATCGTGTCCCCTGACCACCAGTACT
GAATTTGACATGTGGTCTCGAGCACAAGACATGGTTGTTCATTGGGAGAA
GGCGATTGACAACCAACAGACGCCCATGTCAGAGAATCACGTGGGACGAC
TCTATACTGTGGCAATGCGAATTCTACTTGTACACGCAGATCCCAGGCGC
TCCATGTCCGACTGGGTTCAGTTGTTAGAATTATACCTTTTACGTGGCCT
TGAAATCATTACAGCATTGGTTGTTGACGAGTGCTTTTCATTTTACTACC
TGTGGCCGCTATTAGCGGTGGGCTCAGTAGCCGTCCTACCGGGCGAGAAG
CAGATCGTCCGAGCCAAGCTTGCTCAGGTTTCAGTCTTACGGCAGGGAGG
TCCCGTCAATCTGGCGCATTATCGCCTGCAGAAAGTCTGGAGGTCAGGTG
CTCGGTATACTGACTCTGATCGTGGACAGGTTGTTTCAAGGCAGCTTCGG
ACCTTGCTAAAAGAAGATCGATAGATGATGCTGCATCAAAATAATCAACT
TGTCCAGGGCCCTTTCCTGAGATCTGGTGCACGGTTGAGAACGAGAAGTG
GTTGTGGCGAATGTCGGCGACGTCGAAAGAAGTGTGATGAAAAACGGCCC
AGATGCGGAGGCTGTAGTCGAAATGATTTCGAATGTCAATGGCCCAGCGA
GGTCCAGACTGTTGACCGACGAAGGTATCGGAAAACTTCAGACTCCCGGA
GAGAGATGTCTTCCCTGGCTCTAGGAACAGCCCTCCCCAGTGCAGACGAC
GGAGCTCAACCAGGAACCACGGTTATGGCGTCTGACCTCCGTCCGGGGTG
GTCCCTTCCACCCCCTGTAAGCATGCCCGCGCCATTTCACAAGAATGAGC
ATCTGCGTATATACCGGTATTTCGCGCACTCCATAGCACCAAAACTTGTT
CGACAGACCTCGTTATCCAGGTATTCCCAAGACTTACACATCACCCGCCT
TGCCCTTGTTCACCCACTTCTCATGGGTGTCCTCATTGCTATTGCTGGAA
TGGAGATGTCATTGCAGTCATCCAATCTCCATTCGCTGGCTCTACAAAGT
TACCTATTTGCCATAACTAGCATCAAGACGGGTCTGATGGAGGGACGGCA
TACTGGTACTGAGGATTGGCTTCTGGCCACCACGACCTTCTTGTGTCTTT
TTGAAAACTCTCGCCGCGATGCGATGCCAAATGCCCTGTCTCATGTGTTG
GCATCAGGCCAGATGTTGTCCCTTCGTAGGCCAAAACCCCGAAACGCCTC
ACAGGAGGTCATTGTCTTCGAACGCATTTGTGTAGAATCATTTTTGTACC
ACGCCGCTCTACTCACACTGTTTGATTCTTCAGTCAACTGCCTGCCTCTT
ATCAAGGGGGGTTTAAATCTGGAGGGCTATTTTGCAGACCCGGATCACCC
GAACGATGTCCCGCCAGGGACCTTAACGTCAACCCAGCCGGTTCTAGATG
CGTCTTATGAATTCTTTCTTTTGGTTCACGATGTTACAAAGCTCGCTCAA
TCGTGTCCCCTGACCACCAGTACTGAATTTGACATGTGGTCTCGAGCACA
AGACATGGTTGTTCATTGGGAGAAGGCGATTGACAACCAACAGACGCCCA
TGTCAGAGAATCACGTGGGACGACTCTATACTGTGGCAATGCGAATTCTA
CTTGTACACGCAGATCCCAGGCGCTCCATGTCCGACTGGGTTCAGTTGTT
AGAATTATACCTTTTACGTGGCCTTGAAATCATTACAGCATTGGTTGTTG
ACGAGTGCTTTTCATTTTACTACCTGTGGCCGCTATTAGCGGTGGGCTCA
GTAGCCGTCCTACCGGGCGAGAAGCAGATCGTCCGAGCCAAGCTTGCTCA
GGTTTCAGTCTTACGGCAGGGAGGTCCCGTCAATCTGGCGCATTATCGCC
TGCAGAAAGTCTGGAGGTCAGGTGCTCGGTATACTGACTCTGATCGTGGA
CAGGTTGTTTCAAGGCAGCTTCGGACCTTGCTAAAAGAAGATCGATAGAT
GATGCTGCATCAAAATAATCAACTTGTCCAGGGCCCTTTCCTGAGATCTG
GTGCACGGTTGAGAACGAGAAGTGGTTGTGGCGAATGTCGGCGACGTCGA
AAGAAGTGTGATGAAAAACGGCCCAGATGCGGAGGCTGTAGTCGAAATGA
TTTCGAATGTCAATGGCCCAGCGAGGTCCAGACTGTTGACCGACGAAGGT
ATCGGAAAACTTCAGACTCCCGGAGAGAGATGTCTTCCCTGGCTCTAGGA
ACAGCCCTCCCCAGTGCAGACGACGGAGCTCAACCAGGAACCACGGTTAT
GGCGTCTGACCTCCGTCCGGGGTGGTCCCTTCCACCCCCTGTAAGCATGC
CCGCGCCATTTCACAAGAATGAGCATCTGCGTATATACCGGTATTTCGCG
CACTCCATAGCACCAAAACTTGTTCGACAGACCTCGTTATCCAGGTATTC
CCAAGACTTACACATCACCCGCCTTGCCCTTGTTCACCCACTTCTCATGG
GTGTCCTCATTGCTATTGCTGGAATGGAGATGTCATTGCAGTCATCCAAT
CTCCATTCGCTGGCTCTACAAAGTTACCTATTTGCCATAACTAGCATCAA
GACGGGTCTGATGGAGGGACGGCATACTGGTACTGAGGATTGGCTTCTGG
CCACCACGACCTTCTTGTGTCTTTTTGAAAACTCTCGCCGCGATGCGATG
CCAAATGCCCTGTCTCATGTGTTGGCATCAGGCCAGATGTTGTCCCTTCG
TAGGCCAAAACCCCGAAACGCCTCACAGGAGGTCATTGTCTTCGAACGCA
TTTGTGTAGAATCATTTTTGTACCACGCCGCTCTACTCACACTGTTTGAT
TCTTCAGTCAACTGCCTGCCTCTTATCAAGGGGGGTTTAAATCTGGAGGG
CTATTTTGCAGACCCGGATCACCCGAACGATGTCCCGCCAGGGACCTTAA
CGTCAACCCAGCCGGTTCTAGATGCGTCTTATGAATTCTTTCTTTTGGTT
CACGATGTTACAAAGCTCGCTCAATCGTGTCCCCTGACCACCAGTACTGA
ATTTGACATGTGGTCTCGAGCACAAGACATGGTTGTTCATTGGGAGAAGG
CGATTGACAACCAACAGACGCCCATGTCAGAGAATCACGTGGGACGACTC
TATACTGTGGCAATGCGAATTCTACTTGTACACGCAGATCCCAGGCGCTC
CATGTCCGACTGGGTTCAGTTGTTAGAATTATACCTTTTACGTGGCCTTG
AAATCATTACAGCATTGGTTGTTGACGAGTGCTTTTCATTTTACTACCTG
TGGCCGCTATTAGCGGTGGGCTCAGTAGCCGTCCTACCGGGCGAGAAGCA
GATCGTCCGAGCCAAGCTTGCTCAGGTTTCAGTCTTACGGCAGGGAGGTC
CCGTCAATCTGGCGCATTATCGCCTGCAGAAAGTCTGGAGGTCAGGTGCT
CGGTATACTGACTCTGATCGTGGACAGGTTGTTTCAAGGCAGCTTCGGAC
CTTGCTAAAAGAAGATCGATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042025	host cell nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
KJC3_002162	KJC3_002162	Aspergillus niger KJC3	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_002162-T1.utr5p1	KJC3_002162-T1.utr5p1	Aspergillus niger KJC3	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_002162-T1.exon1	KJC3_002162-T1.exon1	Aspergillus niger KJC3	exon
KJC3_002162-T1.exon2	KJC3_002162-T1.exon2	Aspergillus niger KJC3	exon
KJC3_002162-T1.exon3	KJC3_002162-T1.exon3	Aspergillus niger KJC3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_002162-T1.cds	KJC3_002162-T1.cds	Aspergillus niger KJC3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_002162-T1	KJC3_002162-T1-protein	Aspergillus niger KJC3	polypeptide

Properties


Property Name	Value
DBxref	InterPro:IPR021858
DBxref	InterPro:IPR036864
DBxref	InterPro:IPR001138
DBxref	PFAM:PF00172
DBxref	PFAM:PF11951
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC3	2021-10-31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ch2	supercontig	ch2:1844204..1846086 +

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KJC3_002162-T1, KJC3_002162-T1 (mRNA) Aspergillus niger KJC3

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KJC3_002162-T1, KJC3_002162-T1 (mRNA) Aspergillus niger KJC3