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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:1990883..1991824+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002216-T2 ID=KJC3_002216-T2|Name=KJC3_002216-T2|organism=Aspergillus niger KJC3|type=mRNA|length=942bp|location=Sequence derived from alignment at ch2:1990883..1991824+ (Aspergillus niger KJC3)
CCTGAATTGCACCATCTTCTTTACTATACAACCACCCGGCAGAACCCCCA
CTAAATACCCCTCACCGCCCACCCAGCAGAGAAAAATGACAGTTTTTTAT
TTAGTAAGATCAGGCAGGCACAGCTGAAATGCCCATCCCCTCATCATTAC
TCCGCATCTACAGCCAGATATTCAAACCGGCAAAGACCATAAAAATGCCA
CTCATCTCCAACTTCCAGCTCCCCCCTTCGGCGAACCTCCTCGAGGTCCC
CACCGACAAGAAACTGTTCCTCGCCTTTATCTCGTCCGCAGATCCGGCTA
CCGGACAAGCGTGGTGTCCGGATGTCCGTGCCGCATGGCCTAAAATCGAA
GAAGCGTTCTCCAGCGAGCAAGGTCCGCAGGTTGGTGTTGTTGAAGTGGG
ACAGAAGCCCGAGTAAGTTATTCATTTATAACCTACTTATGTATATATTT
ATCTTATGCTGCACATCAACTTAGAGTTCTTGCTAATATACATCTTTTTC
GGTTTATGTAGATGGAAAGACCCACAAAACGCTTACCGGACTAAATGGAA
TGTGAACAACATTCCTGCACTGTTACGGTATGAGTCTGTGAACGGGGAGG
TTGTGGAGACGGGAAGGCTTGTTGAGGGGGAGATTCTAGATCAGGAGAAG
TTGGGTCAGTTTGTTGGATCGAGGTGAGGAGGTTGCATGTATCGTACTAG
TATGATGATATGAATTCTTTTGACTGCGACCATTTATTTGCATAGTGATG
GAATTGTGTCAGGGTTGCGTGTGAGAGTGCGCTTGCATGTCATGTGCCAT
GTATAAGCCTGAGTTGGGATAAGTAGTTGACTCCTCAACGGATTCTGAAA
TGATAGGCTATGACTCGATAGAGAGGACTCATGGGGAGAAGCCAGGTCTT
CTTCCAGCGAACCAATGTAGTGATGGGAAACGTTGATATGGT back to topCoding sequence (CDS) from alignment at ch2:1990883..1991824+ >KJC3_002216-T2 ID=KJC3_002216-T2|Name=KJC3_002216-T2|organism=Aspergillus niger KJC3|type=CDS|length=900bp|location=Sequence derived from alignment at ch2:1990883..1991824+ (Aspergillus niger KJC3)
ATGCCCATCCCCTCATCATTACTCCGCATCTACAGCCAGATATTCAAACC
GGCAAAGACCATAAAAATGCCACTCATCTCCAACTTCCAGCTCCCCCCTT
CGGCGAACCTCCTCGAGGTCCCCACCGACAAGAAACTGTTCCTCGCCTTT
ATCTCGTCCGCAGATCCGGCTACCGGACAAGCGTGGTGTCCGGATGTCCG
TGCCGCATGGCCTAAAATCGAAGAAGCGTTCTCCAGCGAGCAAGGTCCGC
AGGTTGGTGTTGTTGAAGTGGGACAGAAGCCCGAATGGAAAGACCCACAA
AACGCTTACCGGACTAAATGGAATGTGAACAACATTCCTGCACTGTTACG
GTATGAGTCTGTGAACGGGGAGGTTGTGGAGACGGGAAGGCTTGTTGAGG
GGGAGATTCTAGATCAGGAGAAGTTGGGTCAGTTTGTTGGATCGAGGTGA
ATGCCCATCCCCTCATCATTACTCCGCATCTACAGCCAGATATTCAAACC
GGCAAAGACCATAAAAATGCCACTCATCTCCAACTTCCAGCTCCCCCCTT
CGGCGAACCTCCTCGAGGTCCCCACCGACAAGAAACTGTTCCTCGCCTTT
ATCTCGTCCGCAGATCCGGCTACCGGACAAGCGTGGTGTCCGGATGTCCG
TGCCGCATGGCCTAAAATCGAAGAAGCGTTCTCCAGCGAGCAAGGTCCGC
AGGTTGGTGTTGTTGAAGTGGGACAGAAGCCCGAATGGAAAGACCCACAA
AACGCTTACCGGACTAAATGGAATGTGAACAACATTCCTGCACTGTTACG
GTATGAGTCTGTGAACGGGGAGGTTGTGGAGACGGGAAGGCTTGTTGAGG
GGGAGATTCTAGATCAGGAGAAGTTGGGTCAGTTTGTTGGATCGAGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002216-T2.utr5p1 | KJC3_002216-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002216-T2.utr3p1 | KJC3_002216-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036249 |
| DBxref | InterPro:IPR010357 |
| DBxref | PFAM:PF06110 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:1990883..1991824 + |
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