|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2006525..2007981+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002222-T1 ID=KJC3_002222-T1|Name=KJC3_002222-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1457bp|location=Sequence derived from alignment at ch2:2006525..2007981+ (Aspergillus niger KJC3)
TCTTATCACCCCAGATCTCACATTGTCCTAAACTACCTCTCAAAAACCAT
ATACCTAAAGTCTATAGACCTTTGCCGATAGGACCTATCATGTCATCCCC
ACTCACCAATGACCCCGCGCGGGTTGCCCGCATCATGCTGTCGTGGCACT
CCCTCGACCTCGTCTCCTGTACCACCCTCCAGACCCTGTGGGCCGGGTAC
GGGCACATCTGCGCCCTCACCGCCCGAGCCACCACCGCCGAAGCGGCGGA
GCATCTCGGGAAGCTTTGCGGAGTGGATTCGAGAACCGCAGGGAGCACTT
TTCCTCTGATTTTAAAGCTCATCTCACCGCCTCGCAAAGCAGCGGGAAAG
GAGGATGAGGGCCATCTTCGCAAGATGCTCAGCTACGAGGTTGAGCAGTA
CTTCTACAGTGATGTAGTCCCGCGACTAGGAGATGATATCGCTGTGGCTA
ACTGCCTGGCGTCTACGCGAGACATGCGTGGGAAGCAATGTGAAGAGGAA
CTTCGTGGTATGATGGCGACGATTATGGTTGATTTGCGGCCTGCATTCCC
GGTTGCGGGTGAGAAGAGAAGCGTGTTGAGTCGTGCTCAGGTGTATGGGG
CGCTGAATTGGTTGGCAAGGTTTCATAGTCGGTCGTGGGGGTTGTTGTCT
GATGACAGGAGTCTGGATGGGTATGTCCTACCGCCGCTTGAGGAAGCGAA
GAGGAGGCGGGACTTGGGGAAGACGGAAGTAGGGGATGCGTTGTGGCTTA
ACGGAGGGTACACGTATCTGGCAACCCGCCGGAAGGAGTACGCTTCGCTA
GTTGAGGATACGGACTCGGAGTGGTCTGATATCCTATGTACAGCTTCGGA
TGAGTCTGCGCTATCGGTTGCTGAGATGGCTGCGTTCCTCTTAACACCTT
GTGGAAGGAAGATGGAGTCACTTATCCATGGCGATGTCAAGTCAGAGAAC
CTCTTTACGACAAGCAAGGGCGATGAGGTAGCTTTCTTTGACTTTCAATA
TGTCGGGTTAGGTCTGGGAGTTTGTGACCTGGCAAAACTCTTTACGTGCT
CGGTTCCGTTGAGGATGCTTGCTGACGATGAGGAAGACTTGCTACCAGAG
CAATTGGAAATGTGTGAAGGTGAGCGAACTTTGCTGGAGCACTACCATAA
GACGTTGCTCCAGGATAAAGGAGAGCGCTGGTACGAATGGGAATCCTTTG
TACGACACTGGGAGACGGCTCTAGTGGACTGGTGCAGGTTTCAGGCTTCT
TGGGGCTTCTGGGGGAATACTGAGTGGCTTGAGGCTCGTGTGAGATCTAT
TGTGAGCGACCTGGGGTGGAGAGAGTGGTTAAGCCGCAGCATAAGCCGTT
GAATTCTTGCAGACGAATCAATAAATAGCGTTCGATATATTTGTTCATTA
TCAAAGACCCAGCAGGACTGGGGATGCGATGGGCGTCCATTTCAAAAACT
AGATGAC back to topCoding sequence (CDS) from alignment at ch2:2006525..2007981+ >KJC3_002222-T1 ID=KJC3_002222-T1|Name=KJC3_002222-T1|organism=Aspergillus niger KJC3|type=CDS|length=1263bp|location=Sequence derived from alignment at ch2:2006525..2007981+ (Aspergillus niger KJC3)
ATGTCATCCCCACTCACCAATGACCCCGCGCGGGTTGCCCGCATCATGCT
GTCGTGGCACTCCCTCGACCTCGTCTCCTGTACCACCCTCCAGACCCTGT
GGGCCGGGTACGGGCACATCTGCGCCCTCACCGCCCGAGCCACCACCGCC
GAAGCGGCGGAGCATCTCGGGAAGCTTTGCGGAGTGGATTCGAGAACCGC
AGGGAGCACTTTTCCTCTGATTTTAAAGCTCATCTCACCGCCTCGCAAAG
CAGCGGGAAAGGAGGATGAGGGCCATCTTCGCAAGATGCTCAGCTACGAG
GTTGAGCAGTACTTCTACAGTGATGTAGTCCCGCGACTAGGAGATGATAT
CGCTGTGGCTAACTGCCTGGCGTCTACGCGAGACATGCGTGGGAAGCAAT
GTGAAGAGGAACTTCGTGGTATGATGGCGACGATTATGGTTGATTTGCGG
CCTGCATTCCCGGTTGCGGGTGAGAAGAGAAGCGTGTTGAGTCGTGCTCA
GGTGTATGGGGCGCTGAATTGGTTGGCAAGGTTTCATAGTCGGTCGTGGG
GGTTGTTGTCTGATGACAGGAGTCTGGATGGGTATGTCCTACCGCCGCTT
GAGGAAGCGAAGAGGAGGCGGGACTTGGGGAAGACGGAAGTAGGGGATGC
GTTGTGGCTTAACGGAGGGTACACGTATCTGGCAACCCGCCGGAAGGAGT
ACGCTTCGCTAGTTGAGGATACGGACTCGGAGTGGTCTGATATCCTATGT
ACAGCTTCGGATGAGTCTGCGCTATCGGTTGCTGAGATGGCTGCGTTCCT
CTTAACACCTTGTGGAAGGAAGATGGAGTCACTTATCCATGGCGATGTCA
AGTCAGAGAACCTCTTTACGACAAGCAAGGGCGATGAGGTAGCTTTCTTT
GACTTTCAATATGTCGGGTTAGGTCTGGGAGTTTGTGACCTGGCAAAACT
CTTTACGTGCTCGGTTCCGTTGAGGATGCTTGCTGACGATGAGGAAGACT
TGCTACCAGAGCAATTGGAAATGTGTGAAGGTGAGCGAACTTTGCTGGAG
CACTACCATAAGACGTTGCTCCAGGATAAAGGAGAGCGCTGGTACGAATG
GGAATCCTTTGTACGACACTGGGAGACGGCTCTAGTGGACTGGTGCAGGT
TTCAGGCTTCTTGGGGCTTCTGGGGGAATACTGAGTGGCTTGAGGCTCGT
GTGAGATCTATTGTGAGCGACCTGGGGTGGAGAGAGTGGTTAAGCCGCAG
CATAAGCCGTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002222-T1.utr5p1 | KJC3_002222-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002222-T1.utr3p1 | KJC3_002222-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011009 |
| DBxref | InterPro:IPR004119 |
| DBxref | PFAM:PF02958 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2006525..2007981 + |
|
