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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2008175..2009661- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002223-T1 ID=KJC3_002223-T1|Name=KJC3_002223-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1487bp|location=Sequence derived from alignment at ch2:2008175..2009661- (Aspergillus niger KJC3)
GAAGGCTTAAGTAGACTTTCATGTTTGGCGCTGCCTGCAAGCCTTTTGCT
ACATCTCTTGATACATCGTTCTAACATTACCATTGTCGAAATTCATGTCT
TCTCCCATACCACAGTCATGGACAACAAGCGCAGCCCTTCGCCAGCGATT
CCAATGGACAGTTCCGATTCTTCGGATACAGAAAAGCGGACTCCCACAGA
ATCCGCGAATAAAGTCCCTCCTCCCCCTCCTGATGGCGGCTTGACAGCGT
GGTTGCAAGTTGTGGGAGCCTTTTTCCTCTTCTTCAACTCCTGGTAAGTT
ATGCGGATCTCTTCAAACATAACCCATAACACCAAATAACTCAGTTCCTC
AGGGGTATCCTCAACGCCTACGGAGTATTCCAGAGCTACTACCAATCGGA
CCTGATCCCTACATACTCATCCTCCGCTATCACCTGGATCGGCACCGTGC
AAGGTTTCGTCCTGTTTCTGGTTGGAGTGATTGTCGGCCCCATCTTTGAC
AAAGGCTTTCTGCACAGCTTGATTGCCTTTGGAACCTTCATGGTCGTGTT
CGGCCTGATGATGACCTCCCTGTCAACCCAGTACTACCAGCTCTTCCTTG
CGCACGGCATCACAGTGGGCATCGGCTGCGCATTTCTCTTTCTACCCAGC
ATCGCCATCGTCGCCACCTACTTCACCTCACGCCGCGCCGTCGCCACCGG
CATTACAGCGTCAGGAGGCAGCATCGGGGCGGTGATATACCCCATAATGT
TCCACGAATTGATCAGCCGAGTAGGGTTCGGCTGGACGACACGGATCATC
GGCTTTGTAGCGCTAGCTGGACTCTCAGTCTCAATGCTGGTATTGAGGCG
GCGCCTACCACCACCAACGAAGAGTAGATCTTTGCTGGACGTTGCTGCTC
TCAAGGAACCAACCTTCCTGGTTTTCAGTTTCGGCCTGTTCTTCTGCTTC
GTGGGACTCTACTTCCCTTTCTTTTACCTCCAGAGTTACTTTACCTACTA
CCTGCACAACGATAGCAGCTTAGCATTCTACATTTTCGCAGTCCTAAACG
CTACCTCCGTGCTGGGCCGCATCACCCCCGGTCTTATGGCCGACCGTATC
GGCGGCTTGAACACTCTGGTGCCTATTAGTATCCTGGCGACCATTTTGGC
ATTTGTGTGGATTGCCGTGCGCAACGTGGGCGGGGCGGTTGTTTTCACCT
GCTTGTACGGCTACGCTTCCGGGGCGATTGTCTCCCTGCCACCGTCTATC
TTGACACGCATGTCTCCGAAACTGGGTGTTGTGGGCACGCGCCTGGGCAT
GATCTTCATGTTTGCTGGTTGCGGGTTCCTGATCGGTACGCCGATTGCTT
CGCTTCTGCTGGATCTAGAGGAGGCTTCGTTTTGGAAGGCTCAGCTATTC
AGTGGTATGTTTGTCGCTGCTGGGACGATCTGTTTTGTTGTTCTGCGGGT
GATGCTGTGGCGAAAGGGCGGGGGCTGGAAGATTTGA back to topCoding sequence (CDS) from alignment at ch2:2008175..2009661- >KJC3_002223-T1 ID=KJC3_002223-T1|Name=KJC3_002223-T1|organism=Aspergillus niger KJC3|type=CDS|length=2622bp|location=Sequence derived from alignment at ch2:2008175..2009661- (Aspergillus niger KJC3)
GGGTATCCTCAACGCCTACGGAGTATTCCAGAGCTACTACCAATCGGACC
TGATCCCTACATACTCATCCTCCGCTATCACCTGGATCGGCACCGTGCAA
GGTTTCGTCCTGTTTCTGGTTGGAGTGATTGTCGGCCCCATCTTTGACAA
AGGCTTTCTGCACAGCTTGATTGCCTTTGGAACCTTCATGGTCGTGTTCG
GCCTGATGATGACCTCCCTGTCAACCCAGTACTACCAGCTCTTCCTTGCG
CACGGCATCACAGTGGGCATCGGCTGCGCATTTCTCTTTCTACCCAGCAT
CGCCATCGTCGCCACCTACTTCACCTCACGCCGCGCCGTCGCCACCGGCA
TTACAGCGTCAGGAGGCAGCATCGGGGCGGTGATATACCCCATAATGTTC
CACGAATTGATCAGCCGAGTAGGGTTCGGCTGGACGACACGGATCATCGG
CTTTGTAGCGCTAGCTGGACTCTCAGTCTCAATGCTGGTATTGAGGCGGC
GCCTACCACCACCAACGAAGAGTAGATCTTTGCTGGACGTTGCTGCTCTC
AAGGAACCAACCTTCCTGGTTTTCAGTTTCGGCCTGTTCTTCTGCTTCGT
GGGACTCTACTTCCCTTTCTTTTACCTCCAGAGTTACTTTACCTACTACC
TGCACAACGATAGCAGCTTAGCATTCTACATTTTCGCAGTCCTAAACGCT
ACCTCCGTGCTGGGCCGCATCACCCCCGGTCTTATGGCCGACCGTATCGG
CGGCTTGAACACTCTGGTGCCTATTAGTATCCTGGCGACCATTTTGGCAT
TTGTGTGGATTGCCGTGCGCAACGTGGGCGGGGCGGTTGTTTTCACCTGC
TTGTACGGCTACGCTTCCGGGGCGATTGTCTCCCTGCCACCGTCTATCTT
GACACGCATGTCTCCGAAACTGGGTGTTGTGGGCACGCGCCTGGGCATGA
TCTTCATGTTTGCTGGTTGCGGGTTCCTGATCGGTACGCCGATTGCTTCG
CTTCTGCTGGATCTAGAGGAGGCTTCGTTTTGGAAGGCTCAGCTATTCAG
TGGTATGTTTGTCGCTGCTGGGACGATCTGTTTTGTTGTTCTGCGGGTGA
TGCTGTGGCGAAAGGGCGGGGGCTGGAAGATTTGAATGGACAACAAGCGC
AGCCCTTCGCCAGCGATTCCAATGGACAGTTCCGATTCTTCGGATACAGA
AAAGCGGACTCCCACAGAATCCGCGAATAAAGTCCCTCCTCCCCCTCCTG
ATGGCGGCTTGACAGCGTGGTTGCAAGTTGTGGGAGCCTTTTTCCTCTTC
TTCAACTCCTGGGGTATCCTCAACGCCTACGGAGTATTCCAGAGCTACTA
CCAATCGGACCTGATCCCTACATACTCATCCTCCGCTATCACCTGGATCG
GCACCGTGCAAGGTTTCGTCCTGTTTCTGGTTGGAGTGATTGTCGGCCCC
ATCTTTGACAAAGGCTTTCTGCACAGCTTGATTGCCTTTGGAACCTTCAT
GGTCGTGTTCGGCCTGATGATGACCTCCCTGTCAACCCAGTACTACCAGC
TCTTCCTTGCGCACGGCATCACAGTGGGCATCGGCTGCGCATTTCTCTTT
CTACCCAGCATCGCCATCGTCGCCACCTACTTCACCTCACGCCGCGCCGT
CGCCACCGGCATTACAGCGTCAGGAGGCAGCATCGGGGCGGTGATATACC
CCATAATGTTCCACGAATTGATCAGCCGAGTAGGGTTCGGCTGGACGACA
CGGATCATCGGCTTTGTAGCGCTAGCTGGACTCTCAGTCTCAATGCTGGT
ATTGAGGCGGCGCCTACCACCACCAACGAAGAGTAGATCTTTGCTGGACG
TTGCTGCTCTCAAGGAACCAACCTTCCTGGTTTTCAGTTTCGGCCTGTTC
TTCTGCTTCGTGGGACTCTACTTCCCTTTCTTTTACCTCCAGAGTTACTT
TACCTACTACCTGCACAACGATAGCAGCTTAGCATTCTACATTTTCGCAG
TCCTAAACGCTACCTCCGTGCTGGGCCGCATCACCCCCGGTCTTATGGCC
GACCGTATCGGCGGCTTGAACACTCTGGTGCCTATTAGTATCCTGGCGAC
CATTTTGGCATTTGTGTGGATTGCCGTGCGCAACGTGGGCGGGGCGGTTG
TTTTCACCTGCTTGTACGGCTACGCTTCCGGGGCGATTGTCTCCCTGCCA
CCGTCTATCTTGACACGCATGTCTCCGAAACTGGGTGTTGTGGGCACGCG
CCTGGGCATGATCTTCATGTTTGCTGGTTGCGGGTTCCTGATCGGTACGC
CGATTGCTTCGCTTCTGCTGGATCTAGAGGAGGCTTCGTTTTGGAAGGCT
CAGCTATTCAGTGGTATGTTTGTCGCTGCTGGGACGATCTGTTTTGTTGT
TCTGCGGGTGATGCTGTGGCGAAAGGGCGGGGGCTGGAAGATTTGAATGG
ACAACAAGCGCAGCCCTTCGCCAGCGATTCCAATGGACAGTTCCGATTCT
TCGGATACAGAAAAGCGGACTCCCACAGAATCCGCGAATAAAGTCCCTCC
TCCCCCTCCTGATGGCGGCTTGACAGCGTGGTTGCAAGTTGTGGGAGCCT
TTTTCCTCTTCTTCAACTCCTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002223-T1.utr5p1 | KJC3_002223-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2008175..2009661 - |
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