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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2065856..2066892- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002245-T1 ID=KJC3_002245-T1|Name=KJC3_002245-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1037bp|location=Sequence derived from alignment at ch2:2065856..2066892- (Aspergillus niger KJC3)
ATGACACCACCCTTTCCCCCTCCAACTCTAATCTTCCGACCAACCATCCC
CAATCAGGAAACCACATCACGTGCCCCCATCCATCCCAATCCTCCAAACT
TCTCCGGCGCAACTCCGCAAGTCACGAAACGAGGAACCCAGGCAATCCAC
CCCCTCAAGCCCAATCTCCCTCAAAACCTCCTCAAAATGGCCAAGAAAGG
TGAGTCAACCCACCTCTCATCACTCTAACCCTGCGGCAACCTCCCACAAT
GCTCGACTGCACCCGCAGTCTCCCCGAAATCCAAATCCAAATCCATAGCC
ACTGATGAATGATAAACTGACAACAATCGCACCACACAGTCAAGTCGCGC
ACCATCACCGTGCGCCTCATCTCCATGGCCATGACCGGCTTCTATCGCAC
GATGATCCGTCCCCGTACGCACCGCCCGCTCAGCATGCTCAAGTACGACC
CCGTCGTGAAGAAGAAGGTCCTGTTCTTGGAGGCTACGAAGGGTGGTCGG
AATAAATAGATCATCTGAAGTTCCGGCACCTTTGTTTTTACTCGGTGGCT
CGTTTCGAATACCTGCACGGCGGGACGGTCGATATACATACATGCATGTT
GCTTGGGAACGATAGTCGCGCTGCGCTTCGCTTCTTTTCCACGGATAATC
GCTACGAGACGACTGCGACTTTGCGAGATGCAGATACCTATACCGATACT
GCCGGCTTGAGCTTCGGAATTAGCCATCACTGGATCATTTTTTTTTATCG
ATATGAGACGATCATGTACATTAGACGGTGCAGTGGTGAGGATGGTCGTG
GGAGCTGTGCCATAACGACAGGCTTCTGTGGACGTTCGAGCTGTGTATCT
TTTTCGGTGTTATATTGTGGCGTTTAGAGCAAGACATTTTGGGTTGAATC
AATCTTCAATTACTATCAATTTATTTGCGTTAATGCATCTAGCAATAAGT
GGAAAGCTTTCAGACATTCTGTGTTGCGGAATTTGAATTAGGAATATGCT
CTCTCACTTCTCGATATCACGCCGTGTAAGATATAAG back to topCoding sequence (CDS) from alignment at ch2:2065856..2066892- >KJC3_002245-T1 ID=KJC3_002245-T1|Name=KJC3_002245-T1|organism=Aspergillus niger KJC3|type=CDS|length=738bp|location=Sequence derived from alignment at ch2:2065856..2066892- (Aspergillus niger KJC3)
TCAAGTCGCGCACCATCACCGTGCGCCTCATCTCCATGGCCATGACCGGC
TTCTATCGCACGATGATCCGTCCCCGTACGCACCGCCCGCTCAGCATGCT
CAAGTACGACCCCGTCGTGAAGAAGAAGGTCCTGTTCTTGGAGGCTACGA
AGGGTGGTCGGAATAAATAGATGACACCACCCTTTCCCCCTCCAACTCTA
ATCTTCCGACCAACCATCCCCAATCAGGAAACCACATCACGTGCCCCCAT
CCATCCCAATCCTCCAAACTTCTCCGGCGCAACTCCGCAAGTCACGAAAC
GAGGAACCCAGGCAATCCACCCCCTCAAGCCCAATCTCCCTCAAAACCTC
CTCAAAATGGCCAAGAAAGTCAAGTCGCGCACCATCACCGTGCGCCTCAT
CTCCATGGCCATGACCGGCTTCTATCGCACGATGATCCGTCCCCGTACGC
ACCGCCCGCTCAGCATGCTCAAGTACGACCCCGTCGTGAAGAAGAAGGTC
CTGTTCTTGGAGGCTACGAAGGGTGGTCGGAATAAATAGATGACACCACC
CTTTCCCCCTCCAACTCTAATCTTCCGACCAACCATCCCCAATCAGGAAA
CCACATCACGTGCCCCCATCCATCCCAATCCTCCAAACTTCTCCGGCGCA
ACTCCGCAAGTCACGAAACGAGGAACCCAGGCAATCCACCCCCTCAAGCC
CAATCTCCCTCAAAACCTCCTCAAAATGGCCAAGAAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002245-T1.utr3p1 | KJC3_002245-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011332 |
| DBxref | InterPro:IPR038584 |
| DBxref | InterPro:IPR001705 |
| DBxref | PFAM:PF00471 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2065856..2066892 - |
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