You are here

Home

KJC3_002263-T1, KJC3_002263-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002263-T1
Unique NameKJC3_002263-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2105314..2106991-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002263-T1 ID=KJC3_002263-T1|Name=KJC3_002263-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1678bp|location=Sequence derived from alignment at ch2:2105314..2106991- (Aspergillus niger KJC3)
CCCGAAAACAACCTGACTCATTGCTTGCTCCACATGCACTTCTTCGACTT
ACCTCAAGAGCTTCTGGAAGCTATCTTGGCACAAGCCTCGCGTGGCTCTC
TCGCCAGCCTCGCGCGGGTTTGCCAACGCCTCCGACCGCTCGCCGAGCGC
ATCCTGTACCAGTCGGTGTACTTGCGAAATCACGACGGAGAAAAGTTCAC
CTACGCACTGGACTGTGTGCCAGCTCGCGCTGGGTATGTTAGAGAGCTGA
TAGTTCACTACCATTATGTCGATGTTGAAGATGAAGAGGAGTATTATCCC
TTGTATGCAGAAACCCTCTCCCCGACGATCGGGCGTCTCGTAAATCTGCG
AACACTTGTCATCAAGGGGCTCGAGTTCGATGCGGACCGCGAAGAGGACG
ATGAAATCATTGGGGGGTATGAAAGAGTCATCGCAGAAGCCGAGAAATGG
GACACACTTTTTGCGCAATCTGCTGTGCCGGGCTCGCAGATCCTTCCTTC
TCTTACAAAATGTCTGCCAATAACCTTCACTGCTCTCTTACCTCATATGC
TAATATTTCTCAGGTATGATGATCATGGACGACATCGCGCCCAATCAACC
AGCGTGGGACTTTAGTCTGAGGGGCGCCGTGCTAATCCATCCGTGCCTTC
AAGACCTGACCATCGTCGGGGGCGAAATTGAGAGCCTGAAGAATCATGTG
CCTTCACCACGATCAACGCCCCTCGAGAGGCTAAGCCTGTTCGGCTGCGA
TGTGTCCCCCTCTGCGATGGGCGAGATGTTGTCGCTGCCACGTGCCTTGA
AACATTTGACGTATAAAGGGGCTCCATGGTGTTACAGGCCCACAAATCTT
ATGCCGAACCGGCAAATATACGTCGACAAGATAAAGGCACAAGCGGATTC
GCTTCTGAGTCTTGACATTGACTTCTATCCAGGGGTTGTTGACAATCCCC
CGGTAGACTTCACCGCCCTCCAGTGCCTGGAACAACTTACCGTCGAATCA
GATGCATTGAGAGGAACTGGAGAATACGACCCCAAGAACAACAGCAAACT
ATGCCTCTGGAAAAGCCCCGAGCTAAAATGTCAGCTTCCTCCAAGCCTCA
AGCATCTAGTGCTGTTCCTATACTGCCCGAAGAACCCGCCCGATTGGCGT
ACTCTAATTGTACTCTACAACTGGATTTCGCGGGGAAGTTTGCCGAACCT
GGAAAAGGTCACGTTCCAGATAGCAAAACCGTGTGGGCAAGAGATACTGG
ACCGTTCGATCGGAGGAAATGAAATGTCGATTGGTCAGGCTTTTGGAGAG
GTCAAAGTGCAATTGCAGTTCGAGCTGGTCCCTAACAGCAACAACGACGG
CTACGAGCTTTTCGACTGCCCTGAATGCGGCGTAAATTGGCGAAACATGC
ATGCTTGACCTGACCCTTGTTTTATGCTCAAGGAATGGTCGCAGTATTTC
TAAAGAGACATCTGTCAAGCGTTTGATATATTACTCGCAATATACTAGAA
TCGAATACATGTCGCACATCATAGTGGAGCAGTAGTTACACATATTTTCC
AGAACACACACCGAATTCAATCACTGCACACAACAAGGGAACCAGTAGCC
TACATACCCAGCAAAGAGCCCAATAAACTGTCTAACTCCCGTGACCCTCC
AAAAAAACAAACCAAACCACAATCCTAA
back to top

Coding sequence (CDS) from alignment at ch2:2105314..2106991-

>KJC3_002263-T1 ID=KJC3_002263-T1|Name=KJC3_002263-T1|organism=Aspergillus niger KJC3|type=CDS|length=2646bp|location=Sequence derived from alignment at ch2:2105314..2106991- (Aspergillus niger KJC3)
GTATGATGATCATGGACGACATCGCGCCCAATCAACCAGCGTGGGACTTT
AGTCTGAGGGGCGCCGTGCTAATCCATCCGTGCCTTCAAGACCTGACCAT
CGTCGGGGGCGAAATTGAGAGCCTGAAGAATCATGTGCCTTCACCACGAT
CAACGCCCCTCGAGAGGCTAAGCCTGTTCGGCTGCGATGTGTCCCCCTCT
GCGATGGGCGAGATGTTGTCGCTGCCACGTGCCTTGAAACATTTGACGTA
TAAAGGGGCTCCATGGTGTTACAGGCCCACAAATCTTATGCCGAACCGGC
AAATATACGTCGACAAGATAAAGGCACAAGCGGATTCGCTTCTGAGTCTT
GACATTGACTTCTATCCAGGGGTTGTTGACAATCCCCCGGTAGACTTCAC
CGCCCTCCAGTGCCTGGAACAACTTACCGTCGAATCAGATGCATTGAGAG
GAACTGGAGAATACGACCCCAAGAACAACAGCAAACTATGCCTCTGGAAA
AGCCCCGAGCTAAAATGTCAGCTTCCTCCAAGCCTCAAGCATCTAGTGCT
GTTCCTATACTGCCCGAAGAACCCGCCCGATTGGCGTACTCTAATTGTAC
TCTACAACTGGATTTCGCGGGGAAGTTTGCCGAACCTGGAAAAGGTCACG
TTCCAGATAGCAAAACCGTGTGGGCAAGAGATACTGGACCGTTCGATCGG
AGGAAATGAAATGTCGATTGGTCAGGCTTTTGGAGAGGTCAAAGTGCAAT
TGCAGTTCGAGCTGGTCCCTAACAGCAACAACGACGGCTACGAGCTTTTC
GACTGCCCTGAATGCGGCGTAAATTGGCGAAACATGCATGCTTGAATGCA
CTTCTTCGACTTACCTCAAGAGCTTCTGGAAGCTATCTTGGCACAAGCCT
CGCGTGGCTCTCTCGCCAGCCTCGCGCGGGTTTGCCAACGCCTCCGACCG
CTCGCCGAGCGCATCCTGTACCAGTCGGTGTACTTGCGAAATCACGACGG
AGAAAAGTTCACCTACGCACTGGACTGTGTGCCAGCTCGCGCTGGGTATG
TTAGAGAGCTGATAGTTCACTACCATTATGTCGATGTTGAAGATGAAGAG
GAGTATTATCCCTTGTATGCAGAAACCCTCTCCCCGACGATCGGGCGTCT
CGTAAATCTGCGAACACTTGTCATCAAGGGGCTCGAGTTCGATGCGGACC
GCGAAGAGGACGATGAAATCATTGGGGGGTATGAAAGAGTCATCGCAGAA
GCCGAGAAATGGGACACACTTTTTGCGCAATCTGCTGTGCCGGGCTCGCA
GATCCTTCCTTCTCTTACAAAATGTATGATGATCATGGACGACATCGCGC
CCAATCAACCAGCGTGGGACTTTAGTCTGAGGGGCGCCGTGCTAATCCAT
CCGTGCCTTCAAGACCTGACCATCGTCGGGGGCGAAATTGAGAGCCTGAA
GAATCATGTGCCTTCACCACGATCAACGCCCCTCGAGAGGCTAAGCCTGT
TCGGCTGCGATGTGTCCCCCTCTGCGATGGGCGAGATGTTGTCGCTGCCA
CGTGCCTTGAAACATTTGACGTATAAAGGGGCTCCATGGTGTTACAGGCC
CACAAATCTTATGCCGAACCGGCAAATATACGTCGACAAGATAAAGGCAC
AAGCGGATTCGCTTCTGAGTCTTGACATTGACTTCTATCCAGGGGTTGTT
GACAATCCCCCGGTAGACTTCACCGCCCTCCAGTGCCTGGAACAACTTAC
CGTCGAATCAGATGCATTGAGAGGAACTGGAGAATACGACCCCAAGAACA
ACAGCAAACTATGCCTCTGGAAAAGCCCCGAGCTAAAATGTCAGCTTCCT
CCAAGCCTCAAGCATCTAGTGCTGTTCCTATACTGCCCGAAGAACCCGCC
CGATTGGCGTACTCTAATTGTACTCTACAACTGGATTTCGCGGGGAAGTT
TGCCGAACCTGGAAAAGGTCACGTTCCAGATAGCAAAACCGTGTGGGCAA
GAGATACTGGACCGTTCGATCGGAGGAAATGAAATGTCGATTGGTCAGGC
TTTTGGAGAGGTCAAAGTGCAATTGCAGTTCGAGCTGGTCCCTAACAGCA
ACAACGACGGCTACGAGCTTTTCGACTGCCCTGAATGCGGCGTAAATTGG
CGAAACATGCATGCTTGAATGCACTTCTTCGACTTACCTCAAGAGCTTCT
GGAAGCTATCTTGGCACAAGCCTCGCGTGGCTCTCTCGCCAGCCTCGCGC
GGGTTTGCCAACGCCTCCGACCGCTCGCCGAGCGCATCCTGTACCAGTCG
GTGTACTTGCGAAATCACGACGGAGAAAAGTTCACCTACGCACTGGACTG
TGTGCCAGCTCGCGCTGGGTATGTTAGAGAGCTGATAGTTCACTACCATT
ATGTCGATGTTGAAGATGAAGAGGAGTATTATCCCTTGTATGCAGAAACC
CTCTCCCCGACGATCGGGCGTCTCGTAAATCTGCGAACACTTGTCATCAA
GGGGCTCGAGTTCGATGCGGACCGCGAAGAGGACGATGAAATCATTGGGG
GGTATGAAAGAGTCATCGCAGAAGCCGAGAAATGGGACACACTTTTTGCG
CAATCTGCTGTGCCGGGCTCGCAGATCCTTCCTTCTCTTACAAAAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002263KJC3_002263Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002263-T1KJC3_002263-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002263-T1.cdsKJC3_002263-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002263-T1.utr3p1KJC3_002263-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002263-T1.exon2KJC3_002263-T1.exon2Aspergillus niger KJC3exon
KJC3_002263-T1.exon1KJC3_002263-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002263-T1.utr5p1KJC3_002263-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036047
DBxrefInterPro:IPR001810
DBxrefPFAM:PF12937
DBxrefPFAM:PF00646
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2105314..2106991 -
Powered by Drupal