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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2304448..2305651+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002341-T1 ID=KJC3_002341-T1|Name=KJC3_002341-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1204bp|location=Sequence derived from alignment at ch2:2304448..2305651+ (Aspergillus niger KJC3)
ATTCAATCCCTCAGTTACGCTCTGACCATTCGTGCTCTCCCCACCCTCCA
TTCTCCCTCTAACATCATCCCATCATGGCGGCGGAACAAAGAAAGCTGCT
TGAGCAGCTCATGGGAGGTAAATTCTCCAAGCCCAGCTTCTACCAAGCTC
TAAACAGCTAACCCAATTCTTTTTCTCCAGCGGACCAGCTCATAGGTACC
GGCGCTCCCTCTCGCAATGCGCAGCTCCAAATCACCGATCCAAAAGTCTG
TCGCTCGTATCTCGTCGGCACTTGTCCGCATGACCTCTTCACCAATACCA
AGCAAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGAAGGATTGAAGACG
GAGTATGAGACCGCCTCGGCAGCTGAGAAGGCCAAATGGGGATTCGATTA
CGACTATATGCGCGACATGCAGAAATACATCGATGATTGTGACCGACGTA
TCGATACCGCTCAGCGACGCTTGGAAAAGACTCCGGACGAGATCAGGCAG
ACCAACAACTTGGTAAGGCATATACTCCAGCCCAACCACAGGACACCCCA
AGTGGCCAAAAGAAGACTGGACTGATCATATTCTCAATAATATAGCTGAA
GCAAATCTCCGACCTGACCAAAACCATCAACACGGGTCTCCTCGAGATCT
CGGTGCTGGGCGAAACCGGCTCCGTCGCACAGGCCCTGAACGAACTTCAC
AAGATCCGCACAGCCAAGCACCAAAAGGAAACGTGTGAGCGAGAACTGAA
GAATCTTCAAGATACCTCCGGACCTTCGGGTCATCAGAAGCTGCAAGTGT
GCGATGTCTGCGGCGCGTACCTGAGTCGTCTCGATAACGATCGTCGGTTG
GCGGACCATTTCTTCGGAAAGATGCACATGGGATACTCGGACATGCGCAA
GGGGTATAAGAAGCTCAGCGAGGAGCTTAAGGGACGGCCTCCGCCGGTTC
GTCATCACGATGATGATGATGGTGGTTGGGGTGGACGCTCCGGTGGTGGA
CGTGGTCCTCGGTATGGCGGTGGTGGTTACAAGAAGCGCGGTCCTCGCTG
GTAAAACATTGATGAGCGTCTTGTCTTTTCTTGGAGTTTATTCTGCAATG
CTGTTGTAATTTGTCTGGATTTGCATAGCGCAGGCGTTTTCGTTACTACT
ACGTCTGGGATGTTACGGATTAAATAAAAATATAATAAACATGTACAGGC
CGAG back to topCoding sequence (CDS) from alignment at ch2:2304448..2305651+ >KJC3_002341-T1 ID=KJC3_002341-T1|Name=KJC3_002341-T1|organism=Aspergillus niger KJC3|type=CDS|length=2502bp|location=Sequence derived from alignment at ch2:2304448..2305651+ (Aspergillus niger KJC3)
ATGGCGGCGGAACAAAGAAAGCTGCTTGAGCAGCTCATGGGAGCGGACCA
GCTCATAGGTACCGGCGCTCCCTCTCGCAATGCGCAGCTCCAAATCACCG
ATCCAAAAGTCTGTCGCTCGTATCTCGTCGGCACTTGTCCGCATGACCTC
TTCACCAATACCAAGCAAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGA
AGGATTGAAGACGGAGTATGAGACCGCCTCGGCAGCTGAGAAGGCCAAAT
GGGGATTCGATTACGACTATATGCGCGACATGCAGAAATACATCGATGAT
TGTGACCGACGTATCGATACCGCTCAGCGACGCTTGGAAAAGACTCCGGA
CGAGATCAGGCAGACCAACAACTTGCTGAAGCAAATCTCCGACCTGACCA
AAACCATCAACACGGGTCTCCTCGAGATCTCGGTGCTGGGCGAAACCGGC
TCCGTCGCACAGGCCCTGAACGAACTTCACAAGATCCGCACAGCCAAGCA
CCAAAAGGAAACGTGTGAGCGAGAACTGAAGAATCTTCAAGATACCTCCG
GACCTTCGGGTCATCAGAAGCTGCAAGTGTGCGATGTCTGCGGCGCGTAC
CTGAGTCGTCTCGATAACGATCGTCGGTTGGCGGACCATTTCTTCGGAAA
GATGCACATGGGATACTCGGACATGCGCAAGGGGTATAAGAAGCTCAGCG
AGGAGCTTAAGGGACGGCCTCCGCCGGTTCGTCATCACGATGATGATGAT
GGTGGTTGGGGTGGACGCTCCGGTGGTGGACGTGGTCCTCGGTATGGCGG
TGGTGGTTACAAGAAGCGCGGTCCTCGCTGGTAAATGGCGGCGGAACAAA
GAAAGCTGCTTGAGCAGCTCATGGGAGCGGACCAGCTCATAGGTACCGGC
GCTCCCTCTCGCAATGCGCAGCTCCAAATCACCGATCCAAAAGTCTGTCG
CTCGTATCTCGTCGGCACTTGTCCGCATGACCTCTTCACCAATACCAAGC
AAGACCTGGGCCCTTGTCAGAAAGTTCACAGCGAAGGATTGAAGACGGAG
TATGAGACCGCCTCGGCAGCTGAGAAGGCCAAATGGGGATTCGATTACGA
CTATATGCGCGACATGCAGAAATACATCGATGATTGTGACCGACGTATCG
ATACCGCTCAGCGACGCTTGGAAAAGACTCCGGACGAGATCAGGCAGACC
AACAACTTGCTGAAGCAAATCTCCGACCTGACCAAAACCATCAACACGGG
TCTCCTCGAGATCTCGGTGCTGGGCGAAACCGGCTCCGTCGCACAGGCCC
TGAACGAACTTCACAAGATCCGCACAGCCAAGCACCAAAAGGAAACGTGT
GAGCGAGAACTGAAGAATCTTCAAGATACCTCCGGACCTTCGGGTCATCA
GAAGCTGCAAGTGTGCGATGTCTGCGGCGCGTACCTGAGTCGTCTCGATA
ACGATCGTCGGTTGGCGGACCATTTCTTCGGAAAGATGCACATGGGATAC
TCGGACATGCGCAAGGGGTATAAGAAGCTCAGCGAGGAGCTTAAGGGACG
GCCTCCGCCGGTTCGTCATCACGATGATGATGATGGTGGTTGGGGTGGAC
GCTCCGGTGGTGGACGTGGTCCTCGGTATGGCGGTGGTGGTTACAAGAAG
CGCGGTCCTCGCTGGTAAATGGCGGCGGAACAAAGAAAGCTGCTTGAGCA
GCTCATGGGAGCGGACCAGCTCATAGGTACCGGCGCTCCCTCTCGCAATG
CGCAGCTCCAAATCACCGATCCAAAAGTCTGTCGCTCGTATCTCGTCGGC
ACTTGTCCGCATGACCTCTTCACCAATACCAAGCAAGACCTGGGCCCTTG
TCAGAAAGTTCACAGCGAAGGATTGAAGACGGAGTATGAGACCGCCTCGG
CAGCTGAGAAGGCCAAATGGGGATTCGATTACGACTATATGCGCGACATG
CAGAAATACATCGATGATTGTGACCGACGTATCGATACCGCTCAGCGACG
CTTGGAAAAGACTCCGGACGAGATCAGGCAGACCAACAACTTGCTGAAGC
AAATCTCCGACCTGACCAAAACCATCAACACGGGTCTCCTCGAGATCTCG
GTGCTGGGCGAAACCGGCTCCGTCGCACAGGCCCTGAACGAACTTCACAA
GATCCGCACAGCCAAGCACCAAAAGGAAACGTGTGAGCGAGAACTGAAGA
ATCTTCAAGATACCTCCGGACCTTCGGGTCATCAGAAGCTGCAAGTGTGC
GATGTCTGCGGCGCGTACCTGAGTCGTCTCGATAACGATCGTCGGTTGGC
GGACCATTTCTTCGGAAAGATGCACATGGGATACTCGGACATGCGCAAGG
GGTATAAGAAGCTCAGCGAGGAGCTTAAGGGACGGCCTCCGCCGGTTCGT
CATCACGATGATGATGATGGTGGTTGGGGTGGACGCTCCGGTGGTGGACG
TGGTCCTCGGTATGGCGGTGGTGGTTACAAGAAGCGCGGTCCTCGCTGGT
AA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005685 | U1 snRNP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006376 | mRNA splice site selection |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003729 | mRNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002341-T1.utr5p1 | KJC3_002341-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002341-T1.utr3p1 | KJC3_002341-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264D7Y |
| DBxref | InterPro:IPR004882 |
| DBxref | PFAM:PF03194 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2304448..2305651 + |
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