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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2309906..2313139- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002344-T1 ID=KJC3_002344-T1|Name=KJC3_002344-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3234bp|location=Sequence derived from alignment at ch2:2309906..2313139- (Aspergillus niger KJC3)
CCACCCGAACACTCATTGCGAAAGCTCTCGGCCTGCGCGAACCCGCTCCG
GAAATCTTTCTTTCGGGACCTCAAACTGCAACTGAATGGGTTGTTATGCT
GTTGACATTCTATTGATACCCTTTCGCGCACTCTCCTAGATTCTCTGTGG
TCGCAATGCTCAAATCTACGTATACCCCACCCCCTCCGTTACCTCCAGGG
TGGACCGAACATAAAGCTCCTTCAGGTTTGGTTACCAGCTTCCCCGATAT
CCTCTTAAAGTCGCTCTAATTAGACCCAGGTCATCTGTATTACTACAACT
CGCAGACCAAGCAATCCACATATACAAGGCCTCAGGCCACTCCCGTACAA
CCTCCGCCTGCACCTGCACCAGAACCCACGAATAACGCGCCATTCCTAAC
CCCAGATACACTTCCTCCCTTTTCTTCGACTCCTTATGCTCCTCATGGTT
TTGGGCATAGCGCTGCATCTCACGGGCCACCTTTCGATGGTCAGTCACGC
GGAGGCTTTCGCGGGGGCAGAGGATACCATGACCGCAAACCCCGTGGGCC
ACAGGATAGGCCTAAAACCAAACATGATATTCCTGGATGCGCGCCATGGA
TACTCGTGAAGACGAAGCTGGGAAGGAGATTTATTCACAACCCCGAAACG
AACGAAAGTTTTTGGAAGATCCCTCCAGAGGTACTGGTAGGAGTCCTTGA
GTACGATCGCTTGGAGAGAGAGGCGAAGGAAAGGAAGGAGCGGGGCGAGG
AGACGGAAGATGTCGCCAAAGGAAAACCCGAAGCTCAGGAGTCGGATCAA
CCACGGCGGGAAGAAGCAGAGAGTGGTGCCGCTACGGCAGCTGGGGAGGA
GAGCGATGAGTATGAGGAGGTCGAAGTTACTGATAGCGAGGGTGAGGAAG
AGCAACCTTTCAAACGACCGAGAACCGAAGAAGGGGACGAACAGCAGCCG
ATGGAGTTCACTGAAGAAGATATGGAATATCAATTAGCGGCAATGGGCGA
AGAATATGGCCTTGACCCTGGCGAATACGGCGAACCCGGAGAAGAAGAAT
GGGAAGAGGGCGCAGAAGGGCTTCCGCTCACGGAGGAGGATGCCACAGCC
TTATTCCGTGATCTTCTTGACGACTATCGCATTAACCCGTTCTCCACGTG
GGAAAAGATCATCGAAGAAGGTCGGATCATTGACGATAGCCGCTACACTG
TGCTGCCAAACATGAAAACGCGTCGTGAGGTCTGGTCCAACTGGAGTCGT
GACCGGATTCAAGAACTTAAAGAACGCAAAGAGAAGGAAGAAAAGAAGGA
CCCGCGCATCAAGTACTTGGCCTTCCTCCAGGAACACGCCACACCAAAGT
TGTATTGGCCCGAGTTCAAGCGCAAATACAAAAAGGAACCAGAAATGAAG
GATACGCAATTGTCAGACAAAGATCGAGAAAAGTACTACCGCGACTTGAT
TTCTCGATTGAAACAGTCAGAAAGCACGCGAAAGTCTGACCTTTCAGCGC
TACTAAAATCTGTACCACTGCACGAACTCAATCGGTCGTCTAATCTGGAG
GCTCTTCCTCCTTCCATCATCACCGATCTCAGATACATCGCCCTTATGCC
CAAAGTGCGGAATCCGCTTATCGAGGCTTACATCTCTACCTTGCCTGCTG
CTCCGGAAAGCGACATGACCGCCGAGGAAAGAGAAGAGCTAGAACGGAAG
AAGGTTGAACGTGATCGACGCGAAAAGGCGTTGGCAGAACGAGAGAAGCA
GGTACAAGAGGAGAAGAGAAAGCAAAAAGGCGAGCTTGTTCGCGGTAAAC
ACCTTTTGAGAGAAGGGGAAGCGGAGATCGAGGAAGCTATGAGGATCAAT
AGAGGAGGACTTCGCAGCTACATTGAAGCCGAAGATCAATCTTCAAAGGG
CCAAGGCGAGAACGCCAGTCAGCAGCCATGAAGAATCAAAGCTGGCAGCC
TATGTGATATATAAAGCATACTTATGATTGCAAATGACTGTAAAAATACA
TTTCCATCCTTTCTGGCTGATCCAGTATACATTCTCGCGCATGTAGGAGT
TCATCGTAGATAGTATGTTAAGAGTACAAAATGTCGCTGTCCCATCATAA
ACACGGGATACCGCCCACGCCGATAGAAAGTGTACTGTGGCCCATTAAGA
GAATTAATAGCAATGGCCTGTGATTTCACATAGCTTATTGGGTATCACTG
TAAGTAAGAAAAGTCCGGGACCTCCCTCGTATGAAATGACGCCTGTATTT
CCCACGCCCGACCCTTAGCCGCGTTAAACTCATTTAAACCTCCAATTGTC
CCAGTCATCGTCATAATCATCATCGTCATCGTCATCGTCTTCTTCAGCAT
TCGCGTCGCCTGCAGGTGGATTTTGTCGGTCCCCTGACGGGCTAGCAGCG
GAAGGAGGTTCGTCCATTCTCTGCATTTCTGCATCTTCCATGGACCTTAA
TTTCCTCAGCTCTTCACGTTTGTGCTTCAGACGTCTGACGCGCTCTTCTA
ATTGCTCCATTTCATCAAATTCATCTTCCATGAACCGTGCCGCATCCTCC
CTTTCGCCTTCGACTTCAGCCTCACGGCTTTTCTTGATGGCTTCGTTTTC
TTTCTGCTGCTGGGCGGCGAGCTCGTCTGCAGATACTGGCGCTGCTGATA
TAGTCGCTTCCGCGGCGAGCGCAGCCGGCCTATGTGGCACGCGGGTGGGC
TCGACAACTTCGCGCTCGAAAGCGGCCCATTCATCCTCGTCGATGGTTTG
AGTGGTCGTGGCAGGCGGTTCGGAAGCTACAAGAGACGGATCTGATGGCT
GTACATCCGGTTCAGCAGTTTGCTGCTCATGTGCGATGTCAGATGGCGGC
TGCGGTCCGGCGATGTCCTGCTCTGATTCCTCGATGATCTCTTCCTCTTC
CTCCTCGATAGCTCGTGCACTGGGAGGTTGTACGGTGTGCGCGGTCGGCT
GACCGGATGGCATGCTTGCCCTCAACCTCTTGCGCCTCAAATCATCTGCT
GGGTCTACCTTGCGCTTTTTGGTCACACGGTTCGTTGCGCTCCCTGTCTG
GGATGAGCCCTTGCGGGCGGCGAGCTCATTCCGAAGTAATGATCGAACAT
CTGCCATGATCTGTACTGAGTAAAGGTAGGATGGAAAAGATTATAGATAT
TGATTTGATTTTAAGTGAGCTCTAAACAACACGTCAACCGGGGACACGGG
TAAGAAGATCGTGAAAAGTAAAAGACAGTCTATG back to topCoding sequence (CDS) from alignment at ch2:2309906..2313139- >KJC3_002344-T1 ID=KJC3_002344-T1|Name=KJC3_002344-T1|organism=Aspergillus niger KJC3|type=CDS|length=3444bp|location=Sequence derived from alignment at ch2:2309906..2313139- (Aspergillus niger KJC3)
GTCATCTGTATTACTACAACTCGCAGACCAAGCAATCCACATATACAAGG
CCTCAGGCCACTCCCGTACAACCTCCGCCTGCACCTGCACCAGAACCCAC
GAATAACGCGCCATTCCTAACCCCAGATACACTTCCTCCCTTTTCTTCGA
CTCCTTATGCTCCTCATGGTTTTGGGCATAGCGCTGCATCTCACGGGCCA
CCTTTCGATGGTCAGTCACGCGGAGGCTTTCGCGGGGGCAGAGGATACCA
TGACCGCAAACCCCGTGGGCCACAGGATAGGCCTAAAACCAAACATGATA
TTCCTGGATGCGCGCCATGGATACTCGTGAAGACGAAGCTGGGAAGGAGA
TTTATTCACAACCCCGAAACGAACGAAAGTTTTTGGAAGATCCCTCCAGA
GGTACTGGTAGGAGTCCTTGAGTACGATCGCTTGGAGAGAGAGGCGAAGG
AAAGGAAGGAGCGGGGCGAGGAGACGGAAGATGTCGCCAAAGGAAAACCC
GAAGCTCAGGAGTCGGATCAACCACGGCGGGAAGAAGCAGAGAGTGGTGC
CGCTACGGCAGCTGGGGAGGAGAGCGATGAGTATGAGGAGGTCGAAGTTA
CTGATAGCGAGGGTGAGGAAGAGCAACCTTTCAAACGACCGAGAACCGAA
GAAGGGGACGAACAGCAGCCGATGGAGTTCACTGAAGAAGATATGGAATA
TCAATTAGCGGCAATGGGCGAAGAATATGGCCTTGACCCTGGCGAATACG
GCGAACCCGGAGAAGAAGAATGGGAAGAGGGCGCAGAAGGGCTTCCGCTC
ACGGAGGAGGATGCCACAGCCTTATTCCGTGATCTTCTTGACGACTATCG
CATTAACCCGTTCTCCACGTGGGAAAAGATCATCGAAGAAGGTCGGATCA
TTGACGATAGCCGCTACACTGTGCTGCCAAACATGAAAACGCGTCGTGAG
GTCTGGTCCAACTGGAGTCGTGACCGGATTCAAGAACTTAAAGAACGCAA
AGAGAAGGAAGAAAAGAAGGACCCGCGCATCAAGTACTTGGCCTTCCTCC
AGGAACACGCCACACCAAAGTTGTATTGGCCCGAGTTCAAGCGCAAATAC
AAAAAGGAACCAGAAATGAAGGATACGCAATTGTCAGACAAAGATCGAGA
AAAGTACTACCGCGACTTGATTTCTCGATTGAAACAGTCAGAAAGCACGC
GAAAGTCTGACCTTTCAGCGCTACTAAAATCTGTACCACTGCACGAACTC
AATCGGTCGTCTAATCTGGAGGCTCTTCCTCCTTCCATCATCACCGATCT
CAGATACATCGCCCTTATGCCCAAAGTGCGGAATCCGCTTATCGAGGCTT
ACATCTCTACCTTGCCTGCTGCTCCGGAAAGCGACATGACCGCCGAGGAA
AGAGAAGAGCTAGAACGGAAGAAGGTTGAACGTGATCGACGCGAAAAGGC
GTTGGCAGAACGAGAGAAGCAGGTACAAGAGGAGAAGAGAAAGCAAAAAG
GCGAGCTTGTTCGCGGTAAACACCTTTTGAGAGAAGGGGAAGCGGAGATC
GAGGAAGCTATGAGGATCAATAGAGGAGGACTTCGCAGCTACATTGAAGC
CGAAGATCAATCTTCAAAGGGCCAAGGCGAGAACGCCAGTCAGCAGCCAT
GAATGCTCAAATCTACGTATACCCCACCCCCTCCGTTACCTCCAGGGTGG
ACCGAACATAAAGCTCCTTCAGGTCATCTGTATTACTACAACTCGCAGAC
CAAGCAATCCACATATACAAGGCCTCAGGCCACTCCCGTACAACCTCCGC
CTGCACCTGCACCAGAACCCACGAATAACGCGCCATTCCTAACCCCAGAT
ACACTTCCTCCCTTTTCTTCGACTCCTTATGCTCCTCATGGTTTTGGGCA
TAGCGCTGCATCTCACGGGCCACCTTTCGATGGTCAGTCACGCGGAGGCT
TTCGCGGGGGCAGAGGATACCATGACCGCAAACCCCGTGGGCCACAGGAT
AGGCCTAAAACCAAACATGATATTCCTGGATGCGCGCCATGGATACTCGT
GAAGACGAAGCTGGGAAGGAGATTTATTCACAACCCCGAAACGAACGAAA
GTTTTTGGAAGATCCCTCCAGAGGTACTGGTAGGAGTCCTTGAGTACGAT
CGCTTGGAGAGAGAGGCGAAGGAAAGGAAGGAGCGGGGCGAGGAGACGGA
AGATGTCGCCAAAGGAAAACCCGAAGCTCAGGAGTCGGATCAACCACGGC
GGGAAGAAGCAGAGAGTGGTGCCGCTACGGCAGCTGGGGAGGAGAGCGAT
GAGTATGAGGAGGTCGAAGTTACTGATAGCGAGGGTGAGGAAGAGCAACC
TTTCAAACGACCGAGAACCGAAGAAGGGGACGAACAGCAGCCGATGGAGT
TCACTGAAGAAGATATGGAATATCAATTAGCGGCAATGGGCGAAGAATAT
GGCCTTGACCCTGGCGAATACGGCGAACCCGGAGAAGAAGAATGGGAAGA
GGGCGCAGAAGGGCTTCCGCTCACGGAGGAGGATGCCACAGCCTTATTCC
GTGATCTTCTTGACGACTATCGCATTAACCCGTTCTCCACGTGGGAAAAG
ATCATCGAAGAAGGTCGGATCATTGACGATAGCCGCTACACTGTGCTGCC
AAACATGAAAACGCGTCGTGAGGTCTGGTCCAACTGGAGTCGTGACCGGA
TTCAAGAACTTAAAGAACGCAAAGAGAAGGAAGAAAAGAAGGACCCGCGC
ATCAAGTACTTGGCCTTCCTCCAGGAACACGCCACACCAAAGTTGTATTG
GCCCGAGTTCAAGCGCAAATACAAAAAGGAACCAGAAATGAAGGATACGC
AATTGTCAGACAAAGATCGAGAAAAGTACTACCGCGACTTGATTTCTCGA
TTGAAACAGTCAGAAAGCACGCGAAAGTCTGACCTTTCAGCGCTACTAAA
ATCTGTACCACTGCACGAACTCAATCGGTCGTCTAATCTGGAGGCTCTTC
CTCCTTCCATCATCACCGATCTCAGATACATCGCCCTTATGCCCAAAGTG
CGGAATCCGCTTATCGAGGCTTACATCTCTACCTTGCCTGCTGCTCCGGA
AAGCGACATGACCGCCGAGGAAAGAGAAGAGCTAGAACGGAAGAAGGTTG
AACGTGATCGACGCGAAAAGGCGTTGGCAGAACGAGAGAAGCAGGTACAA
GAGGAGAAGAGAAAGCAAAAAGGCGAGCTTGTTCGCGGTAAACACCTTTT
GAGAGAAGGGGAAGCGGAGATCGAGGAAGCTATGAGGATCAATAGAGGAG
GACTTCGCAGCTACATTGAAGCCGAAGATCAATCTTCAAAGGGCCAAGGC
GAGAACGCCAGTCAGCAGCCATGAATGCTCAAATCTACGTATACCCCACC
CCCTCCGTTACCTCCAGGGTGGACCGAACATAAAGCTCCTTCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002344-T1.utr3p1 | KJC3_002344-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002344-T1.utr5p1 | KJC3_002344-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036020 |
| DBxref | InterPro:IPR036517 |
| DBxref | InterPro:IPR002713 |
| DBxref | InterPro:IPR001202 |
| DBxref | PFAM:PF00397 |
| DBxref | PFAM:PF01846 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2309906..2313139 - |
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