You are here

Home

KJC3_002385-T1, KJC3_002385-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002385-T1
Unique NameKJC3_002385-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2433344..2434861-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002385-T1 ID=KJC3_002385-T1|Name=KJC3_002385-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1518bp|location=Sequence derived from alignment at ch2:2433344..2434861- (Aspergillus niger KJC3)
GGCGGTGATGTCAAGGAGGACAGTCGATCCATTCCCGACCCCGCGTCTCG
CATCTACAACGTATCACTGACACCAACCTCGATCGCAACGGAAGGCTATC
CGACATTAGACCCTGTGAACTAGACCTTTTTCTTCTCGGTACTGAGATCC
GATGATATCCGTGTCTCTTGACGCTTAGGTACTAAGTTGATCTATCTCCG
ACATCGCTTCCCTGGGTGCCGAGGGGCTATCTGTCTATATAAGCTGCTGA
CCACCGACTAGACGAACGGTCCTGAAATCCGATATAGCTATTCGCTTGCC
ACATATACTCCGTGACTCTAGATCTCCTAGACTCTACCATTGTTACGTCG
CCAACATCCTCCTCCTTCAGCATGCGTCTTCTTCCTGAGCCAGCGGTCGC
CCAGATCCTGCGACAGTTGACCCCTGCACAATGCCATGACCTTCTCGACG
CTCTCTGTGAGGGTCTCACCACTGTATCTTCAGAGTCCTCCACACCAAGC
CACGAGCGACTTGTCCATCAACCGCTCCGCAGCACCATTGTCACCAAAGA
CCAGAACCTCTCCCTCTTCATGCCCGTTTCCAACACTGTCCACACCGGCT
TCAAAGTGGTAACCGCCTCCCAAGCAAACGGTATCATCGGCGTCATCAAC
ATTTTCTCCCCGGAAGGTAAATTGCAAGGACTCCTCAGTGCTGCAGAGAT
CACAGCCTTCCGCACCGCCTTGGCGGTTATGTCGCTGTTCCTTCGCTGCA
CAACCCTCAACAAAGAGCACATCTTGATCTTTGGCTCTGGACGCCAGGCA
GAATGGCATGCGCGACTAGCCCTGCTTCTCGTTCCAGATCAGATCAAGAA
AATTACCTTTATCAATCGCGGTCGCCGGCGGCTGGACGAGCTGGAGAGAG
ATGCGATCGCTGATCTGCGGTCTGCTCATCCCGATAAGACCTTTGCTACG
TTGGTCAAGGAAGATACACCGAATTACGAGGAACAGCTACGGATTGAACT
GGCTGCTTGCGATGTCATCTTCAGCTGTACGCCGGCGACCGAGCCAAACT
TTCCGTACACCTATCTGCAGCCGTCCAAGCGGCGGTTTATCTCTCTTATC
GGCTCGTACAAGCCGCATATGCGGGAGATTGATACTGAGACGCTGCTGTC
GGGCGGAGGGAAGGTCTACGTGGACTCGAAGGAGGCGTGCTTGGAAGAGT
CCGGAGAGTTGATTCTGGCCGAGGCGCAAGAAGATCAACTTATTGAGATT
GGAGAGCTGTTCGGTCGGATGCGAAAAGACGAGTCCATTGATGTGCCGGA
AGGGTGTAATGTGGTGTTCAAGTGCGTGGGGATGGGGATTATGGATTTGG
TGGTCGGGAATAAGCTGTTGGAAGTTGGTCGGGCCAGAAACATTGGTCTG
GAAGTGGATGGGTTTTAAGAATCGTACTAGCTCTACTACTAGAGAAAATA
GCTCCCCTAATGGGCTCGATGGTTACTGTAGTGATGGTCTATCTATATCC
GCCCCAGCTGCAATGGCC
back to top

Coding sequence (CDS) from alignment at ch2:2433344..2434861-

>KJC3_002385-T1 ID=KJC3_002385-T1|Name=KJC3_002385-T1|organism=Aspergillus niger KJC3|type=CDS|length=1047bp|location=Sequence derived from alignment at ch2:2433344..2434861- (Aspergillus niger KJC3)
ATGCGTCTTCTTCCTGAGCCAGCGGTCGCCCAGATCCTGCGACAGTTGAC
CCCTGCACAATGCCATGACCTTCTCGACGCTCTCTGTGAGGGTCTCACCA
CTGTATCTTCAGAGTCCTCCACACCAAGCCACGAGCGACTTGTCCATCAA
CCGCTCCGCAGCACCATTGTCACCAAAGACCAGAACCTCTCCCTCTTCAT
GCCCGTTTCCAACACTGTCCACACCGGCTTCAAAGTGGTAACCGCCTCCC
AAGCAAACGGTATCATCGGCGTCATCAACATTTTCTCCCCGGAAGGTAAA
TTGCAAGGACTCCTCAGTGCTGCAGAGATCACAGCCTTCCGCACCGCCTT
GGCGGTTATGTCGCTGTTCCTTCGCTGCACAACCCTCAACAAAGAGCACA
TCTTGATCTTTGGCTCTGGACGCCAGGCAGAATGGCATGCGCGACTAGCC
CTGCTTCTCGTTCCAGATCAGATCAAGAAAATTACCTTTATCAATCGCGG
TCGCCGGCGGCTGGACGAGCTGGAGAGAGATGCGATCGCTGATCTGCGGT
CTGCTCATCCCGATAAGACCTTTGCTACGTTGGTCAAGGAAGATACACCG
AATTACGAGGAACAGCTACGGATTGAACTGGCTGCTTGCGATGTCATCTT
CAGCTGTACGCCGGCGACCGAGCCAAACTTTCCGTACACCTATCTGCAGC
CGTCCAAGCGGCGGTTTATCTCTCTTATCGGCTCGTACAAGCCGCATATG
CGGGAGATTGATACTGAGACGCTGCTGTCGGGCGGAGGGAAGGTCTACGT
GGACTCGAAGGAGGCGTGCTTGGAAGAGTCCGGAGAGTTGATTCTGGCCG
AGGCGCAAGAAGATCAACTTATTGAGATTGGAGAGCTGTTCGGTCGGATG
CGAAAAGACGAGTCCATTGATGTGCCGGAAGGGTGTAATGTGGTGTTCAA
GTGCGTGGGGATGGGGATTATGGATTTGGTGGTCGGGAATAAGCTGTTGG
AAGTTGGTCGGGCCAGAAACATTGGTCTGGAAGTGGATGGGTTTTAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002385KJC3_002385Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002385-T1KJC3_002385-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002385-T1.cdsKJC3_002385-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002385-T1.utr3p1KJC3_002385-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002385-T1.exon2KJC3_002385-T1.exon2Aspergillus niger KJC3exon
KJC3_002385-T1.exon1KJC3_002385-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002385-T1.utr5p2KJC3_002385-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_002385-T1.utr5p1KJC3_002385-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR003462
DBxrefInterPro:IPR023401
DBxrefPFAM:PF02423
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2433344..2434861 -
Powered by Drupal