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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2638031..2639849+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002467-T1 ID=KJC3_002467-T1|Name=KJC3_002467-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1819bp|location=Sequence derived from alignment at ch2:2638031..2639849+ (Aspergillus niger KJC3)
CTCCGCATTGCACCGACTTGCCTGTCCACATTCTTTCCTGCACTCACCTC
TGATCTCGTGTCCATCGCGTGCTACCAACTACCCACAGTTACCTATCGCA
CTACAGTTCTTCAGATCCGCGAGAATACCATGGCCGACGCCGCACAGCAA
CGGACGCTCGCGACTGCCTTTGCCCCGCCGCCTCCGCTATGGAAACACTT
CACGCCCGATAATATGAAGAGACTCGAGGAGATCAAGAAGGAGGCATCCA
AAGGCGAGGATGGGAAACCGCAGAAGAAGAAGTGGTCGCCTGCCGAATTG
CGCGCTCTCGATCTACCACCAGAGCTTCGGCTTCTCGTGCCACCAGCGAT
CCCTGACACCGGCCATTACAGCGTGTTCGGAGAGCTTCAGAACGTAAGTC
TTCGATTATTCTGCCACTGTGGCTCTGCTGCTCACACATCACCACAGCTT
TCGACAGCTTTACCGTCCCTGAAAGATCAAGGCATTACCCAGCTATACCC
TTCCTCCTCCCCGGCAGATACCGACCGTCAATCTCCCTCAGAGCCTTCGC
GGCCGCTCAACCACGCATACTACCTCCTCAAGATCAGCAAATCTCTCCTT
TTAAACTTTCTCGAATTTGTCGGCGTTCTATCAGTATCCCCGGAGCAGTT
TGAATCTAAAGTCGAGGACTTGCGCAACCTCTTCATCAACGCACATCATC
TCCTCAACTTGTACAGACCACACCAAGCTAGGGAATCTCTGATCATGATG
ATGGAAGAGCAATTGAGTCGAACCAAGGAAGAAATTCAGCAGATGGACAA
ACTGAAAGCCGAGATCACGGGTGTTCTAGAGCGGTTGGAAGCAGATGGCA
TCGCTGCGCAGTCACATCCCCAGCAGACCAATGAGGACAGCAAAAAAGAT
TCTGAAACCAGTCAAAAGACCATCGAAGATGCACAATTAGTGTGGGATCT
CCTGGATGGGAAGATTGAGGGTTGAAATTCTCGAATGCCGATAGCCTCGT
GATTGTCCGATAACAACCCACAAAAGAAGCAGTTAGCTCCTGCTACGAAC
CTCCGATTGTATAGCACAGATGCAGATCGACACCATGACATCTTGGTGGG
AATACGACCAGATTGCGAAATTATTAACGAACTATACATCTCTACTGTCG
CGACCAATCCTTGACAGAGATCGTTCAACAAGCAACAGGGATCGGGCCAA
ATACAGGCAGATACGGTCCACTGCTACCATTACCCAAGCATTCAAACACA
ACATACGCGATTTACAACGGGCACCATGGACTAGAAAGCATCCACTTTTC
GATACCCATAAATTCCACACTGCGGTCGGGAACAACATGGTTCCGCGATG
ATCACGTGTCGCGCTAACGGCGCGCGTTTAAATTCCCACCAAATTTTCTC
CCGCAACTCTTCTTCAGTTCTACAACAACGAAGATTCGACATGACCAAGC
TGGCCTTTTGAGGACTCGGCAATATTAGAAAGCTTAATGATGCTTCAGCT
TGAGCTTCAAGACTAGCTCTCCGGCTTAAATGCCATGCCCAATTTCAAAT
TCAATTGGTAAGTCGAGCAATATGTCTCCTAGTTTGGCTTATATGATGAT
TTGCGTATATCTTTGTTTCAACCCCATCTGAAAGTACAAATTGTACTCTT
TGATTATAACTGCGCATATAATATCTGAAATAAGCTCAATTGCTTTTATT
GCTTTGCTTGCAATCACGAAAGAATGAATGAACTGTCTTGCTGACTTTGT
TCAAGATCTAGGTCTTCACTTTATTACTATTATGATAGTCAAGATCAATA
TAATATATTCGTTGAAAAA back to topCoding sequence (CDS) from alignment at ch2:2638031..2639849+ >KJC3_002467-T1 ID=KJC3_002467-T1|Name=KJC3_002467-T1|organism=Aspergillus niger KJC3|type=CDS|length=1584bp|location=Sequence derived from alignment at ch2:2638031..2639849+ (Aspergillus niger KJC3)
ATGGCCGACGCCGCACAGCAACGGACGCTCGCGACTGCCTTTGCCCCGCC
GCCTCCGCTATGGAAACACTTCACGCCCGATAATATGAAGAGACTCGAGG
AGATCAAGAAGGAGGCATCCAAAGGCGAGGATGGGAAACCGCAGAAGAAG
AAGTGGTCGCCTGCCGAATTGCGCGCTCTCGATCTACCACCAGAGCTTCG
GCTTCTCGTGCCACCAGCGATCCCTGACACCGGCCATTACAGCGTGTTCG
GAGAGCTTCAGAACCTTTCGACAGCTTTACCGTCCCTGAAAGATCAAGGC
ATTACCCAGCTATACCCTTCCTCCTCCCCGGCAGATACCGACCGTCAATC
TCCCTCAGAGCCTTCGCGGCCGCTCAACCACGCATACTACCTCCTCAAGA
TCAGCAAATCTCTCCTTTTAAACTTTCTCGAATTTGTCGGCGTTCTATCA
GTATCCCCGGAGCAGTTTGAATCTAAAGTCGAGGACTTGCGCAACCTCTT
CATCAACGCACATCATCTCCTCAACTTGTACAGACCACACCAAGCTAGGG
AATCTCTGATCATGATGATGGAAGAGCAATTGAGTCGAACCAAGGAAGAA
ATTCAGCAGATGGACAAACTGAAAGCCGAGATCACGGGTGTTCTAGAGCG
GTTGGAAGCAGATGGCATCGCTGCGCAGTCACATCCCCAGCAGACCAATG
AGGACAGCAAAAAAGATTCTGAAACCAGTCAAAAGACCATCGAAGATGCA
CAATTAGTGTGGGATCTCCTGGATGGGAAGATTGAGGGTTGAATGGCCGA
CGCCGCACAGCAACGGACGCTCGCGACTGCCTTTGCCCCGCCGCCTCCGC
TATGGAAACACTTCACGCCCGATAATATGAAGAGACTCGAGGAGATCAAG
AAGGAGGCATCCAAAGGCGAGGATGGGAAACCGCAGAAGAAGAAGTGGTC
GCCTGCCGAATTGCGCGCTCTCGATCTACCACCAGAGCTTCGGCTTCTCG
TGCCACCAGCGATCCCTGACACCGGCCATTACAGCGTGTTCGGAGAGCTT
CAGAACCTTTCGACAGCTTTACCGTCCCTGAAAGATCAAGGCATTACCCA
GCTATACCCTTCCTCCTCCCCGGCAGATACCGACCGTCAATCTCCCTCAG
AGCCTTCGCGGCCGCTCAACCACGCATACTACCTCCTCAAGATCAGCAAA
TCTCTCCTTTTAAACTTTCTCGAATTTGTCGGCGTTCTATCAGTATCCCC
GGAGCAGTTTGAATCTAAAGTCGAGGACTTGCGCAACCTCTTCATCAACG
CACATCATCTCCTCAACTTGTACAGACCACACCAAGCTAGGGAATCTCTG
ATCATGATGATGGAAGAGCAATTGAGTCGAACCAAGGAAGAAATTCAGCA
GATGGACAAACTGAAAGCCGAGATCACGGGTGTTCTAGAGCGGTTGGAAG
CAGATGGCATCGCTGCGCAGTCACATCCCCAGCAGACCAATGAGGACAGC
AAAAAAGATTCTGAAACCAGTCAAAAGACCATCGAAGATGCACAATTAGT
GTGGGATCTCCTGGATGGGAAGATTGAGGGTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002467-T1.utr5p1 | KJC3_002467-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926587S |
| DBxref | InterPro:IPR037212 |
| DBxref | InterPro:IPR009244 |
| DBxref | PFAM:PF05983 |
| Product | Mediator of RNA polymerase II transcription subunit 7 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2638031..2639849 + |
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