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KJC3_002495-T1, KJC3_002495-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002495-T1
Unique NameKJC3_002495-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2727853..2728373+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002495-T1 ID=KJC3_002495-T1|Name=KJC3_002495-T1|organism=Aspergillus niger KJC3|type=mRNA|length=521bp|location=Sequence derived from alignment at ch2:2727853..2728373+ (Aspergillus niger KJC3)
ATGAAGCTCGTCCGGTAAGCCAACCGCTGCAGATCGCGCCTGGTGCAGCT
GTGCCCGCGAAGATTGCACAGCGACTAATTCCTATCCGCACAGGTTTCTG
ATGAAGTGCGCCAACGAGACGGTGACGATTGAGCTGAAGAATGGTGAGTT
TCCTATCCCTTTATTTCTTCCAGCGCCTGAAGCTCCATCCATCTCAACAT
CAAATCTAACCACAAATAGGCACCATCCTCCACGGCACCATCACCTCCGT
CTCCCCCCAGATGAACACCTCCCTCCGCACGGTTAAAATGACCCCCAAAG
GCCGCGACCCCATCTCCCTCGACACCATCAACATCCGTGGCTCCACGATT
CGCTACTACATCCTGCCCGATAGTCTGCCCCTCGATACGCTGCTGATCGA
CGACACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGCGGACCGCGGAG
GCCGTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCGGTCGTGGCCGT
GGTCGTGGTCGTGGATTCTAA
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Coding sequence (CDS) from alignment at ch2:2727853..2728373+

>KJC3_002495-T1 ID=KJC3_002495-T1|Name=KJC3_002495-T1|organism=Aspergillus niger KJC3|type=CDS|length=1098bp|location=Sequence derived from alignment at ch2:2727853..2728373+ (Aspergillus niger KJC3)
ATGAAGCTCGTCCGGTTTCTGATGAAGTGCGCCAACGAGACGGTGACGAT
TGAGCTGAAGAATGGCACCATCCTCCACGGCACCATCACCTCCGTCTCCC
CCCAGATGAACACCTCCCTCCGCACGGTTAAAATGACCCCCAAAGGCCGC
GACCCCATCTCCCTCGACACCATCAACATCCGTGGCTCCACGATTCGCTA
CTACATCCTGCCCGATAGTCTGCCCCTCGATACGCTGCTGATCGACGACA
CGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGCGGACCGCGGAGGCCGT
GGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCGGTCGTGGCCGTGGTCG
TGGTCGTGGATTCTAAATGAAGCTCGTCCGGTTTCTGATGAAGTGCGCCA
ACGAGACGGTGACGATTGAGCTGAAGAATGGCACCATCCTCCACGGCACC
ATCACCTCCGTCTCCCCCCAGATGAACACCTCCCTCCGCACGGTTAAAAT
GACCCCCAAAGGCCGCGACCCCATCTCCCTCGACACCATCAACATCCGTG
GCTCCACGATTCGCTACTACATCCTGCCCGATAGTCTGCCCCTCGATACG
CTGCTGATCGACGACACGCCCAAGCCGAAGAACAAGGCGCGCAAGGAAGC
GGACCGCGGAGGCCGTGGTGGTCGTGGTGGTCCTCGTGGTAGAGGGCGCG
GTCGTGGCCGTGGTCGTGGTCGTGGATTCTAAATGAAGCTCGTCCGGTTT
CTGATGAAGTGCGCCAACGAGACGGTGACGATTGAGCTGAAGAATGGCAC
CATCCTCCACGGCACCATCACCTCCGTCTCCCCCCAGATGAACACCTCCC
TCCGCACGGTTAAAATGACCCCCAAAGGCCGCGACCCCATCTCCCTCGAC
ACCATCAACATCCGTGGCTCCACGATTCGCTACTACATCCTGCCCGATAG
TCTGCCCCTCGATACGCTGCTGATCGACGACACGCCCAAGCCGAAGAACA
AGGCGCGCAAGGAAGCGGACCGCGGAGGCCGTGGTGGTCGTGGTGGTCCT
CGTGGTAGAGGGCGCGGTCGTGGCCGTGGTCGTGGTCGTGGATTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SMD1KJC3_002495Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002495-T1.exon1KJC3_002495-T1.exon1Aspergillus niger KJC3exon
KJC3_002495-T1.exon2KJC3_002495-T1.exon2Aspergillus niger KJC3exon
KJC3_002495-T1.exon3KJC3_002495-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002495-T1.cdsKJC3_002495-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002495-T1KJC3_002495-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09265FL1
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034102
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductmRNA splicing protein smd1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2727853..2728373 +
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