You are here

Home

KJC3_002504-T1, KJC3_002504-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002504-T1
Unique NameKJC3_002504-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2746226..2747520-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002504-T1 ID=KJC3_002504-T1|Name=KJC3_002504-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1295bp|location=Sequence derived from alignment at ch2:2746226..2747520- (Aspergillus niger KJC3)
CTTTCCTGAACTAGACTATGACCTCCATCTTCTCCTAAAATGTATCACGT
TGAACTCCTCCCCAACAGCACAACCACCCACGCCACTCCCGGGTGGACCT
ACGTCCCCGATCGCGGCTTCGACCCAGCCAAAGCCGCCATCACGCCCGCC
ATCGGCCGCAAACGCGGAATCCGCGATCCAGGCCGAGCGGACATCTCCTC
GCGACAGAACAATGCCATCGTCCGACATCTCGCGGAGCTGGATCGCGAGA
ATCACCGGGACGTGCAGATCTCAATTCCAGTAAAACAGAAGGATGCATCT
GGTCGAGGTATGCAATATACATACATCCGCCCCTATAATCATGAGGACAT
ACCCTCCTAACATCTATAACCTCACCAGGAACACGAGGCAAAGTCACCTC
CAACGTCCGACGAATCCTCCAATCCCAAAAGACCTTCCGCAACTATCTCG
ACGACGAAGAAGCCGCCCTAGCGCAGCAAGCTTCCACGCAGCAAACCCAA
CAAACCTCTACCTCATCCTCGCATCGCCCCTCCGTTAACAAAATCACCAA
ACCCTCCTCTTCCTCTCGTCGCAGCTCGACACCTCTAACAGCACCAACAC
CCAAACCCGACACCTCCTCTCGCAGTAATCGCAGCAAACAACAACATCAA
CCCTCCACCGCCCCTACCTCCTCCCGCGCCTCAACCGTAACTACCCCCGC
CGAAACAGAAACAGAAGCACAAACACCCGCGCCCGACAAAGATCAAACCC
AAGACAAAGACGCAGAGAAAAAGGATGAAGCGGAGGAGAAGGAGCAGCAA
AACCCTCACGAACTTATCAAATCCGAATACGACAACGACCCCCTCCTGAA
ATCGTACATCCCCTCCGCGCCCTCAGAACGCATCATGCAGGCCTTGCTCT
CCGAACCACCGTTAACGTATCATGCATCACGCGCTGGCCCGCCGATTGCG
AGAAAATCGCCGCGGTATTTCTGCTGTATGTGTGGGTATTGGGGGAAGAT
TCGGTGCAAGAATTGTCATTTGAGGACTTGTGGGTTGGGTTGTTATAAGG
TTCATGAGGATTCGAGGTGCGGGGCGTTTTTCTAATTGGGAAAATGAGGT
ACTTTGATGGATTAGGATGGCCAGGGATGTGCAGACAGCACTGTACTATT
CAACTTTTGACTCCAAGCTCAGGCCGTTACTACTGAATAGGCTGACGGAG
CCACTCTCAATCAGGGAGAAGTTCGGAGGCAAGTCCCTAACTAATGACGG
CCCACACTGACGCCAGCGAGATATTTATCTACTTGAAAACCTGTG
back to top

Coding sequence (CDS) from alignment at ch2:2746226..2747520-

>KJC3_002504-T1 ID=KJC3_002504-T1|Name=KJC3_002504-T1|organism=Aspergillus niger KJC3|type=CDS|length=1950bp|location=Sequence derived from alignment at ch2:2746226..2747520- (Aspergillus niger KJC3)
GAACACGAGGCAAAGTCACCTCCAACGTCCGACGAATCCTCCAATCCCAA
AAGACCTTCCGCAACTATCTCGACGACGAAGAAGCCGCCCTAGCGCAGCA
AGCTTCCACGCAGCAAACCCAACAAACCTCTACCTCATCCTCGCATCGCC
CCTCCGTTAACAAAATCACCAAACCCTCCTCTTCCTCTCGTCGCAGCTCG
ACACCTCTAACAGCACCAACACCCAAACCCGACACCTCCTCTCGCAGTAA
TCGCAGCAAACAACAACATCAACCCTCCACCGCCCCTACCTCCTCCCGCG
CCTCAACCGTAACTACCCCCGCCGAAACAGAAACAGAAGCACAAACACCC
GCGCCCGACAAAGATCAAACCCAAGACAAAGACGCAGAGAAAAAGGATGA
AGCGGAGGAGAAGGAGCAGCAAAACCCTCACGAACTTATCAAATCCGAAT
ACGACAACGACCCCCTCCTGAAATCGTACATCCCCTCCGCGCCCTCAGAA
CGCATCATGCAGGCCTTGCTCTCCGAACCACCGTTAACGTATCATGCATC
ACGCGCTGGCCCGCCGATTGCGAGAAAATCGCCGCGGTATTTCTGCTGTA
TGTGTGGGTATTGGGGGAAGATTCGGTGCAAGAATTGTCATTTGAGGACT
TGTGGGTTGGGTTGTTATAAGGTTCATGAGGATTCGAGGTGCGGGGCGTT
TTTCTAAATGTATCACGTTGAACTCCTCCCCAACAGCACAACCACCCACG
CCACTCCCGGGTGGACCTACGTCCCCGATCGCGGCTTCGACCCAGCCAAA
GCCGCCATCACGCCCGCCATCGGCCGCAAACGCGGAATCCGCGATCCAGG
CCGAGCGGACATCTCCTCGCGACAGAACAATGCCATCGTCCGACATCTCG
CGGAGCTGGATCGCGAGAATCACCGGGACGTGCAGATCTCAATTCCAGTA
AAACAGAAGGATGCATCTGGTCGAGGAACACGAGGCAAAGTCACCTCCAA
CGTCCGACGAATCCTCCAATCCCAAAAGACCTTCCGCAACTATCTCGACG
ACGAAGAAGCCGCCCTAGCGCAGCAAGCTTCCACGCAGCAAACCCAACAA
ACCTCTACCTCATCCTCGCATCGCCCCTCCGTTAACAAAATCACCAAACC
CTCCTCTTCCTCTCGTCGCAGCTCGACACCTCTAACAGCACCAACACCCA
AACCCGACACCTCCTCTCGCAGTAATCGCAGCAAACAACAACATCAACCC
TCCACCGCCCCTACCTCCTCCCGCGCCTCAACCGTAACTACCCCCGCCGA
AACAGAAACAGAAGCACAAACACCCGCGCCCGACAAAGATCAAACCCAAG
ACAAAGACGCAGAGAAAAAGGATGAAGCGGAGGAGAAGGAGCAGCAAAAC
CCTCACGAACTTATCAAATCCGAATACGACAACGACCCCCTCCTGAAATC
GTACATCCCCTCCGCGCCCTCAGAACGCATCATGCAGGCCTTGCTCTCCG
AACCACCGTTAACGTATCATGCATCACGCGCTGGCCCGCCGATTGCGAGA
AAATCGCCGCGGTATTTCTGCTGTATGTGTGGGTATTGGGGGAAGATTCG
GTGCAAGAATTGTCATTTGAGGACTTGTGGGTTGGGTTGTTATAAGGTTC
ATGAGGATTCGAGGTGCGGGGCGTTTTTCTAAATGTATCACGTTGAACTC
CTCCCCAACAGCACAACCACCCACGCCACTCCCGGGTGGACCTACGTCCC
CGATCGCGGCTTCGACCCAGCCAAAGCCGCCATCACGCCCGCCATCGGCC
GCAAACGCGGAATCCGCGATCCAGGCCGAGCGGACATCTCCTCGCGACAG
AACAATGCCATCGTCCGACATCTCGCGGAGCTGGATCGCGAGAATCACCG
GGACGTGCAGATCTCAATTCCAGTAAAACAGAAGGATGCATCTGGTCGAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002504KJC3_002504Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002504-T1KJC3_002504-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002504-T1.cdsKJC3_002504-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002504-T1.utr3p1KJC3_002504-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002504-T1.exon2KJC3_002504-T1.exon2Aspergillus niger KJC3exon
KJC3_002504-T1.exon1KJC3_002504-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002504-T1.utr5p1KJC3_002504-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR007529
DBxrefPFAM:PF04438
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2746226..2747520 -
Powered by Drupal