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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2870405..2872293- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002542-T1 ID=KJC3_002542-T1|Name=KJC3_002542-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1889bp|location=Sequence derived from alignment at ch2:2870405..2872293- (Aspergillus niger KJC3)
ATCTCATCTCTCATCTTATTCCTCATCTCTCATCCGCATACGCTTCCATC
AAAAACTATCTATCTATCCATCGCTGGTATACAGATAGTCAATCATCATG
GATAGTGCATTCCCGAAGCGTCCCTCCTTCGTGAGATACGGACCATACAC
CTACGATGACTACGGAGTCACCGTAGCCAACATCCCCAGAGCATCATCCC
AGACGCTGGCAACACTCTTCCCCACGAATCCGGTCACTGCACCCAGCAGA
AGGCCCGTGAAGCGGTGGATAGCGGCCCAGCTCCAACACTTCGGCATTCC
CTATCAGCCATCTAATACTATAGCTCAGCTGCTGGCTCTCCTTGAAAGAG
AGTACAAAGACGGAAAGGTAACACTCCTCCACCCTCTCAGTTCCAGACAA
AAAGCTGACCAAAGACGAACAGTGCAGCTACGAGTCGCCTTCAGTCCGCC
TCCTCGACAAAACCATGTACGAAATGTACAATGCCGTGCAGGAGGCCTAT
CAGCAGCAAAAGGCTGAGTGGCGGAAGAAGAAGTTCGCTCGTCAGGTCTC
TCCTTCCGACGAAGCTCTGTTCGATCCTTTTCTTTTTATGGCCAAGTACT
TCCTCGACAAGGAGAACGGAGTGCCGGATAAAACCAAGCAGACAGAGGCC
ATTGTCTTGCACAATGTTTATAACCAGCAGTTCGTGAGCACGGCTCTCTC
CATCCCCGGTCTGAGCTTCCACATCAGCCACCCGGCCACCGTCATCGGAT
GGGCAGACACCTTCGAAGAAGGCTTGGATGCAGGCTTCGCCAGTCTGTCA
CAGAACCACGTCAAGGAATATGTGCCGACCTTTGAGGCGAACTTTGATCA
CTGCCGCTTCCTGACCAAGTATTTCCTGTCGCTTGACTATCCCTATGAAA
TGGGTGTCCCTGCCCGTGACAGAACCGTGGAGCCCGTGCAGCTTATGCCC
CAGCTGTATTTCGACGTGCGCGAGAAACTCAGAAAGGAAGTGGCCAATAT
CAACGGTCTTTTGATCGCTACTACCCCCGGTCGAGGCGGTACCTGGACAC
TTATTACCTGGAGCGAGTACGCAGACAAGCTCACCGGTGTAGTCTCGAAG
ATCCACGCCGCCAGTATGAATGAGAAGATGTACGACGATACTCTCATCTC
TCTGGTGTGGCAGTCCAAGCTCAGTCGCCATACCCTGTTCAAGCAGTGCG
TGAAGCCCAACAACAACACTTCGGCGTTGAGATTGAGCCAGCTGCAGGGC
CAATATGTCATCCGCTGCAACGCCATCGATCCCTGGGGCTACGAGGACTT
CTCTCTTGACATCAACGCGCCCCGTCGCAACGATCCCGCCGCGCGCGCCA
CCTTCTCTCTCGGAAAACTGCAGGGGGCTATGATCCTCGCTCTAGACTGC
GACAAAGTAGACCAGATGCGCAAGATCCTGGAAAAGAAAAGCACCGCCAC
TCAACATAGCAATCCCGAGTCCGATGATGATAATGAGATGGACGAACACT
TGACCGTCCACCGATTCAGAGACGACGACGCTAAGTGGCGAGTCTACCTC
CAGTACGCAGGTACCTGCAACGGTCTTAACCAGGTCGATGAGCACAATGA
GCAGGTCGGGTTCATTGATTTCAACGTTGACCCTGAGCGAAGTGACGATG
ATGAGAAAGCTCTGGGCTATGGTCTTGCGTACGGACGCGGTCTTATCGTC
GGTCCTAAGTATATGACTTCGCGCAAGAGCGACAAGGGCGAGATTCTGGA
GATTGAGGTCTTCAAGTGGACTAGTGATACCGTCCGAGTCGCGGCTGAGT
GGAATGCGTTTAACTTCTGGGGTGGATTTGAAGCCCGATTCAGAGTTGGT
GAGAGAGCTATGACTATGACCAAGGGGTATGAGCTTTAG back to topCoding sequence (CDS) from alignment at ch2:2870405..2872293- >KJC3_002542-T1 ID=KJC3_002542-T1|Name=KJC3_002542-T1|organism=Aspergillus niger KJC3|type=CDS|length=3474bp|location=Sequence derived from alignment at ch2:2870405..2872293- (Aspergillus niger KJC3)
TGCAGCTACGAGTCGCCTTCAGTCCGCCTCCTCGACAAAACCATGTACGA
AATGTACAATGCCGTGCAGGAGGCCTATCAGCAGCAAAAGGCTGAGTGGC
GGAAGAAGAAGTTCGCTCGTCAGGTCTCTCCTTCCGACGAAGCTCTGTTC
GATCCTTTTCTTTTTATGGCCAAGTACTTCCTCGACAAGGAGAACGGAGT
GCCGGATAAAACCAAGCAGACAGAGGCCATTGTCTTGCACAATGTTTATA
ACCAGCAGTTCGTGAGCACGGCTCTCTCCATCCCCGGTCTGAGCTTCCAC
ATCAGCCACCCGGCCACCGTCATCGGATGGGCAGACACCTTCGAAGAAGG
CTTGGATGCAGGCTTCGCCAGTCTGTCACAGAACCACGTCAAGGAATATG
TGCCGACCTTTGAGGCGAACTTTGATCACTGCCGCTTCCTGACCAAGTAT
TTCCTGTCGCTTGACTATCCCTATGAAATGGGTGTCCCTGCCCGTGACAG
AACCGTGGAGCCCGTGCAGCTTATGCCCCAGCTGTATTTCGACGTGCGCG
AGAAACTCAGAAAGGAAGTGGCCAATATCAACGGTCTTTTGATCGCTACT
ACCCCCGGTCGAGGCGGTACCTGGACACTTATTACCTGGAGCGAGTACGC
AGACAAGCTCACCGGTGTAGTCTCGAAGATCCACGCCGCCAGTATGAATG
AGAAGATGTACGACGATACTCTCATCTCTCTGGTGTGGCAGTCCAAGCTC
AGTCGCCATACCCTGTTCAAGCAGTGCGTGAAGCCCAACAACAACACTTC
GGCGTTGAGATTGAGCCAGCTGCAGGGCCAATATGTCATCCGCTGCAACG
CCATCGATCCCTGGGGCTACGAGGACTTCTCTCTTGACATCAACGCGCCC
CGTCGCAACGATCCCGCCGCGCGCGCCACCTTCTCTCTCGGAAAACTGCA
GGGGGCTATGATCCTCGCTCTAGACTGCGACAAAGTAGACCAGATGCGCA
AGATCCTGGAAAAGAAAAGCACCGCCACTCAACATAGCAATCCCGAGTCC
GATGATGATAATGAGATGGACGAACACTTGACCGTCCACCGATTCAGAGA
CGACGACGCTAAGTGGCGAGTCTACCTCCAGTACGCAGGTACCTGCAACG
GTCTTAACCAGGTCGATGAGCACAATGAGCAGGTCGGGTTCATTGATTTC
AACGTTGACCCTGAGCGAAGTGACGATGATGAGAAAGCTCTGGGCTATGG
TCTTGCGTACGGACGCGGTCTTATCGTCGGTCCTAAGTATATGACTTCGC
GCAAGAGCGACAAGGGCGAGATTCTGGAGATTGAGGTCTTCAAGTGGACT
AGTGATACCGTCCGAGTCGCGGCTGAGTGGAATGCGTTTAACTTCTGGGG
TGGATTTGAAGCCCGATTCAGAGTTGGTGAGAGAGCTATGACTATGACCA
AGGGGTATGAGCTTTAGATGGATAGTGCATTCCCGAAGCGTCCCTCCTTC
GTGAGATACGGACCATACACCTACGATGACTACGGAGTCACCGTAGCCAA
CATCCCCAGAGCATCATCCCAGACGCTGGCAACACTCTTCCCCACGAATC
CGGTCACTGCACCCAGCAGAAGGCCCGTGAAGCGGTGGATAGCGGCCCAG
CTCCAACACTTCGGCATTCCCTATCAGCCATCTAATACTATAGCTCAGCT
GCTGGCTCTCCTTGAAAGAGAGTACAAAGACGGAAAGTGCAGCTACGAGT
CGCCTTCAGTCCGCCTCCTCGACAAAACCATGTACGAAATGTACAATGCC
GTGCAGGAGGCCTATCAGCAGCAAAAGGCTGAGTGGCGGAAGAAGAAGTT
CGCTCGTCAGGTCTCTCCTTCCGACGAAGCTCTGTTCGATCCTTTTCTTT
TTATGGCCAAGTACTTCCTCGACAAGGAGAACGGAGTGCCGGATAAAACC
AAGCAGACAGAGGCCATTGTCTTGCACAATGTTTATAACCAGCAGTTCGT
GAGCACGGCTCTCTCCATCCCCGGTCTGAGCTTCCACATCAGCCACCCGG
CCACCGTCATCGGATGGGCAGACACCTTCGAAGAAGGCTTGGATGCAGGC
TTCGCCAGTCTGTCACAGAACCACGTCAAGGAATATGTGCCGACCTTTGA
GGCGAACTTTGATCACTGCCGCTTCCTGACCAAGTATTTCCTGTCGCTTG
ACTATCCCTATGAAATGGGTGTCCCTGCCCGTGACAGAACCGTGGAGCCC
GTGCAGCTTATGCCCCAGCTGTATTTCGACGTGCGCGAGAAACTCAGAAA
GGAAGTGGCCAATATCAACGGTCTTTTGATCGCTACTACCCCCGGTCGAG
GCGGTACCTGGACACTTATTACCTGGAGCGAGTACGCAGACAAGCTCACC
GGTGTAGTCTCGAAGATCCACGCCGCCAGTATGAATGAGAAGATGTACGA
CGATACTCTCATCTCTCTGGTGTGGCAGTCCAAGCTCAGTCGCCATACCC
TGTTCAAGCAGTGCGTGAAGCCCAACAACAACACTTCGGCGTTGAGATTG
AGCCAGCTGCAGGGCCAATATGTCATCCGCTGCAACGCCATCGATCCCTG
GGGCTACGAGGACTTCTCTCTTGACATCAACGCGCCCCGTCGCAACGATC
CCGCCGCGCGCGCCACCTTCTCTCTCGGAAAACTGCAGGGGGCTATGATC
CTCGCTCTAGACTGCGACAAAGTAGACCAGATGCGCAAGATCCTGGAAAA
GAAAAGCACCGCCACTCAACATAGCAATCCCGAGTCCGATGATGATAATG
AGATGGACGAACACTTGACCGTCCACCGATTCAGAGACGACGACGCTAAG
TGGCGAGTCTACCTCCAGTACGCAGGTACCTGCAACGGTCTTAACCAGGT
CGATGAGCACAATGAGCAGGTCGGGTTCATTGATTTCAACGTTGACCCTG
AGCGAAGTGACGATGATGAGAAAGCTCTGGGCTATGGTCTTGCGTACGGA
CGCGGTCTTATCGTCGGTCCTAAGTATATGACTTCGCGCAAGAGCGACAA
GGGCGAGATTCTGGAGATTGAGGTCTTCAAGTGGACTAGTGATACCGTCC
GAGTCGCGGCTGAGTGGAATGCGTTTAACTTCTGGGGTGGATTTGAAGCC
CGATTCAGAGTTGGTGAGAGAGCTATGACTATGACCAAGGGGTATGAGCT
TTAGATGGATAGTGCATTCCCGAAGCGTCCCTCCTTCGTGAGATACGGAC
CATACACCTACGATGACTACGGAGTCACCGTAGCCAACATCCCCAGAGCA
TCATCCCAGACGCTGGCAACACTCTTCCCCACGAATCCGGTCACTGCACC
CAGCAGAAGGCCCGTGAAGCGGTGGATAGCGGCCCAGCTCCAACACTTCG
GCATTCCCTATCAGCCATCTAATACTATAGCTCAGCTGCTGGCTCTCCTT
GAAAGAGAGTACAAAGACGGAAAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002542-T1.utr5p1 | KJC3_002542-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_2.13 |
| Note | antiSMASH:Cluster_2.12 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2870405..2872293 - |
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