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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:2922743..2924719+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002561-T1 ID=KJC3_002561-T1|Name=KJC3_002561-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1977bp|location=Sequence derived from alignment at ch2:2922743..2924719+ (Aspergillus niger KJC3)
CTTGAAGTACAACCACAACCACATCGCGCGATCTGAGAAGACAGAGAAGC
ATCGAGCACAATCATGGTCTCGCATCCTCCAAGCCCAGTCCGTCCATCGG
AAGAATCTAACAGGTCTCTGGAGCGCTCCCTTCGTGGACCAGATTCCGAC
CGTGAATATCCCCGCTCCGACTCAAGAGAGTCATACACGAACCAGAGAAA
CCCTAGTCCCGACTATGGATCGTCTAAGAAATACTTACTTCGTGAAGTTG
AGGGACCCCCGGAGCTTCATGGACCAGCTACCAAGAAGAGCACGGCCCCC
AGTGGCTTATTATCCTGGGGATGGGAAATTGGCGCATCCGTTTTGAGTGT
TGCATGTGTGGTCATCCTGATCGTGCTGCTAAACCACCTAGATGGAATGT
CCTACGCCGACTGGGAATACAGAGTCTCTCCAAACGCAGTGGTCGCGGTG
GTAGCAACCGCTAACAGAGCTACACTGCTATTCCCGGTTGGGGTTTGTCT
CAGTCAACTCAAATGGAATCACTATCGCAGCCAAAGACGGCTATACGATA
TATACGCTCTGGATCAGGCCAGCCAAGGAATCTGGGGTTCTTTGCAGCTG
ATCACCACGAAGCGTCCCAGCCTGGCTACGCTCGGCGCAGTTACCTTGAT
TTTTTCGGCCGCACTCGATCCCTTGACCCAGCAGATTCTCACGTTTCCTT
CCCGTATCGTTCCCGCTTTGAATGAGACTGCTTCACTGCAAACTGCTCAG
GCCTACGTACCCGGCAACGCAAACAGCGACAATAATATGAGTCTCCTTAT
TCTCCAAAGTATCTATGGATCAGATAATACCCAGGAGCCGACCTGCAGTA
CAGGCTCGTGCAAGTATCCGACTTTCGACACGTTAGGGGCATGTAGCAAA
TGCCAGGATGTCACCACGGGATCCAAGCAGAGTTGCACTGCTCTCTCTAC
AAACAGTTCATATGCCAATTTTTTCGACGGCACCGCATATCAAGGGGCCA
AGCCAAATTGTACATACACCACGCCGGGAGACCTACAGATAACGCCGGAC
ATCTTCGAAGCAGCTACTGTAAACATTGGATCTGAAAACGCAGTTGAACT
CGAGAAGGATACCTGGACATTCGCAACTACTGACATGGATCGCCTAAACC
TCAGCAGTTCCCAAGGGCCTCGGGTAGCTGGGATCCTAAACCCAATAGTT
GGCCTAGCAGCGGCGATATACGATGACCCCTACATAATTTATACGGCCGA
AAACCATACTGTCTTGGAACCAAAGCCACAAATCACTGAATGCGCACTTT
ATTTCTGCGCCCAGAGATACACAAACAACAGCTATAGCTCTGACCATCGG
TCACTTGCAGCCTCTGAGACGGAGCAGCTCTATACGAAAAACAAATACTT
CCAAATGTTCTACCCCAATGAGCTGGCTCCACTGAATAGCTCCACCCCGA
GCTTCGCAACCAACGGCTCCTACACCATCTCAGGAAATACTGTGCTGCAA
ATCCTCAACTCTTTCACATCTACAGTATCACTCTCTGACCAAATTGAAGC
TGGATGGACGTATTCCGTGCAGGAGGGGAAAGGGACCAGCCCTGTTATGA
AGAACGTTGCTGTTGGAATTACAAAGGGAATTCGCGCTGGGCCGAATAGC
ACCACAATCACCGGGGAGGCATTTACCACGCAGACGTATATATCCGTGCG
CTGGTATTGGGCCGTGGCGCCAATTGTGATCACTATCCTGTCGATCTTGT
TCTTAGTTTTGATTGTTGCGCATACTGCGAGGGCTAAAGGAGTGGGATTG
TGGAAATCATCAGCGCTGGCGTTGCTAGCGTGCCGTGTGACACAGGGACC
TGAGCATCCGGACCTACAGACACTTGGGGAAGCTGAGATGGAGAAGGTTT
CAAAGTGTATGTATGTCTCGTGGGACAGGGAGGGCGAGCCGTTGGCTTTG
AGGGTTGATGCGGTCAAGAAGGGATGA back to topCoding sequence (CDS) from alignment at ch2:2922743..2924719+ >KJC3_002561-T1 ID=KJC3_002561-T1|Name=KJC3_002561-T1|organism=Aspergillus niger KJC3|type=CDS|length=1914bp|location=Sequence derived from alignment at ch2:2922743..2924719+ (Aspergillus niger KJC3)
ATGGTCTCGCATCCTCCAAGCCCAGTCCGTCCATCGGAAGAATCTAACAG
GTCTCTGGAGCGCTCCCTTCGTGGACCAGATTCCGACCGTGAATATCCCC
GCTCCGACTCAAGAGAGTCATACACGAACCAGAGAAACCCTAGTCCCGAC
TATGGATCGTCTAAGAAATACTTACTTCGTGAAGTTGAGGGACCCCCGGA
GCTTCATGGACCAGCTACCAAGAAGAGCACGGCCCCCAGTGGCTTATTAT
CCTGGGGATGGGAAATTGGCGCATCCGTTTTGAGTGTTGCATGTGTGGTC
ATCCTGATCGTGCTGCTAAACCACCTAGATGGAATGTCCTACGCCGACTG
GGAATACAGAGTCTCTCCAAACGCAGTGGTCGCGGTGGTAGCAACCGCTA
ACAGAGCTACACTGCTATTCCCGGTTGGGGTTTGTCTCAGTCAACTCAAA
TGGAATCACTATCGCAGCCAAAGACGGCTATACGATATATACGCTCTGGA
TCAGGCCAGCCAAGGAATCTGGGGTTCTTTGCAGCTGATCACCACGAAGC
GTCCCAGCCTGGCTACGCTCGGCGCAGTTACCTTGATTTTTTCGGCCGCA
CTCGATCCCTTGACCCAGCAGATTCTCACGTTTCCTTCCCGTATCGTTCC
CGCTTTGAATGAGACTGCTTCACTGCAAACTGCTCAGGCCTACGTACCCG
GCAACGCAAACAGCGACAATAATATGAGTCTCCTTATTCTCCAAAGTATC
TATGGATCAGATAATACCCAGGAGCCGACCTGCAGTACAGGCTCGTGCAA
GTATCCGACTTTCGACACGTTAGGGGCATGTAGCAAATGCCAGGATGTCA
CCACGGGATCCAAGCAGAGTTGCACTGCTCTCTCTACAAACAGTTCATAT
GCCAATTTTTTCGACGGCACCGCATATCAAGGGGCCAAGCCAAATTGTAC
ATACACCACGCCGGGAGACCTACAGATAACGCCGGACATCTTCGAAGCAG
CTACTGTAAACATTGGATCTGAAAACGCAGTTGAACTCGAGAAGGATACC
TGGACATTCGCAACTACTGACATGGATCGCCTAAACCTCAGCAGTTCCCA
AGGGCCTCGGGTAGCTGGGATCCTAAACCCAATAGTTGGCCTAGCAGCGG
CGATATACGATGACCCCTACATAATTTATACGGCCGAAAACCATACTGTC
TTGGAACCAAAGCCACAAATCACTGAATGCGCACTTTATTTCTGCGCCCA
GAGATACACAAACAACAGCTATAGCTCTGACCATCGGTCACTTGCAGCCT
CTGAGACGGAGCAGCTCTATACGAAAAACAAATACTTCCAAATGTTCTAC
CCCAATGAGCTGGCTCCACTGAATAGCTCCACCCCGAGCTTCGCAACCAA
CGGCTCCTACACCATCTCAGGAAATACTGTGCTGCAAATCCTCAACTCTT
TCACATCTACAGTATCACTCTCTGACCAAATTGAAGCTGGATGGACGTAT
TCCGTGCAGGAGGGGAAAGGGACCAGCCCTGTTATGAAGAACGTTGCTGT
TGGAATTACAAAGGGAATTCGCGCTGGGCCGAATAGCACCACAATCACCG
GGGAGGCATTTACCACGCAGACGTATATATCCGTGCGCTGGTATTGGGCC
GTGGCGCCAATTGTGATCACTATCCTGTCGATCTTGTTCTTAGTTTTGAT
TGTTGCGCATACTGCGAGGGCTAAAGGAGTGGGATTGTGGAAATCATCAG
CGCTGGCGTTGCTAGCGTGCCGTGTGACACAGGGACCTGAGCATCCGGAC
CTACAGACACTTGGGGAAGCTGAGATGGAGAAGGTTTCAAAGTGTATGTA
TGTCTCGTGGGACAGGGAGGGCGAGCCGTTGGCTTTGAGGGTTGATGCGG
TCAAGAAGGGATGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002561-T1.utr5p1 | KJC3_002561-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021514 |
| DBxref | PFAM:PF11374 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:2922743..2924719 + |
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