You are here

Home

KJC3_002565-T1, KJC3_002565-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002565-T1
Unique NameKJC3_002565-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:2931704..2933514+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002565-T1 ID=KJC3_002565-T1|Name=KJC3_002565-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1811bp|location=Sequence derived from alignment at ch2:2931704..2933514+ (Aspergillus niger KJC3)
ATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCGCTTTG
CGTGTCTAGCAAAACTCCTTCCCCGCCTACGATCTCTGCATATCCGAAAT
CTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAAGCAAT
GTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATTCTTGC
CGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACCGGGTG
ACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACATCGAT
TTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTGATCTCTGGAC
GACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTGTTCTGGCGAT
TTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGGTGTGATTGAT
GGTGAATGATTCCCTTTTTTTGATGCTGGATTAGTTAGGAAAAGATTATT
GACCTTGATGTTCTAATCTAGGAGCTGGTCAATACTGGTGGAGTGCGATG
GCTGAAGATTCCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACT
GCATCATGCCACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGT
TCAACCTCATTGCGAACTCCACGGACATCCTCATCAGTAATATGACAATG
TTGGTGAAAAGTGAGATATCGGATGCTCCAGCCAAGGTGCGACCTATAAA
TTCACCCCCGATTCCATCTGCTATGGCCTACTGCTACCTGAACCTGACTT
GTACTGTGCTTAGAACACAGATGGCTGGGACATCTATCGCAGCTCAAATA
TCGTGATCCAAGACTCAAGGATAGTCAACACGGACGGTAAGCCATGGCAA
TCCTTGATGGTATTCCCTAAAACGTCACTCATGGTATATTCGCTGCAGAC
TGTGTATCGTTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCGA
ATGCACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAG
GGGAAACGGACATCGTTGAAGATCTGTACATCTATAACATATCCATGACA
GATGCATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGA
TACGTCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTA
CCTATGAATACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTCG
CAGTGCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTGTACG
TACTTACAAGCTCCTGATAGGCAGAAGATTCAATAAAAGGAAAAAGCTGA
TCGGTCTTTCAAAGTCGAAACTCGTGATTGAGGATGTCCTTTTCAAGGAC
TTTAAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTTGAC
ATGTAGTAGTCCGGATGTAGGTTTCTTTGCTGCGACTTTGCATTACAGAT
TGTCATATGGCCATTAACAGGTGCTAGGTCTGCCATAATATCACTGTCCA
AGACATCAGTGTGACACCGCCCAGTGGCAACTCTCCCACTTTCACCTGCA
ACAATATGGGGAATTCGAATCTGGAGGACATTACGTGTGCCTGACTTCGG
GGTACTTCTGTCTTCACTGTAGCCAGGCACTATCCCTGACACTCTGCCCC
CTACGTGGTCTTACCTTTATCGGATTTAGATAGTAACCAATCTGATCCCA
CATCCTGATACCTGGATACTTTTCCCCATGGCATCGTGTAATCTATGATA
CTCAAAGGAAC
back to top

Coding sequence (CDS) from alignment at ch2:2931704..2933514+

>KJC3_002565-T1 ID=KJC3_002565-T1|Name=KJC3_002565-T1|organism=Aspergillus niger KJC3|type=CDS|length=7830bp|location=Sequence derived from alignment at ch2:2931704..2933514+ (Aspergillus niger KJC3)
ATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCGCTTTG
CGTGTCTAGCAAAACTCCTTCCCCGCCTACGATCTCTGCATATCCGAAAT
CTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAAGCAAT
GTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATTCTTGC
CGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACCGGGTG
ACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACATCGAT
TTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTGATCTCTGGAC
GACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTGTTCTGGCGAT
TTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGGTGTGATTGAT
GGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAGATTCCAGTGTCGT
GCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCACCATTTCTG
GGCTCAAGATGCTCAACTCCCCGAATTGGTTCAACCTCATTGCGAACTCC
ACGGACATCCTCATCAGTAATATGACAATGTTGGTGAAAAGTGAGATATC
GGATGCTCCAGCCAAGAACACAGATGGCTGGGACATCTATCGCAGCTCAA
ATATCGTGATCCAAGACTCAAGGATAGTCAACACGGACGACTGTGTATCG
TTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCGAATGCACTGG
GTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAGGGGAAACGG
ACATCGTTGAAGATCTGTACATCTATAACATATCCATGACAGATGCATCA
GATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGATACGTCAGG
CTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTATGAAT
ACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTCGCAGTGCTAT
GAGTCGAAGAACCAAACGATGTGCGATTCATATCCTTCGAAACTCGTGAT
TGAGGATGTCCTTTTCAAGGACTTTAAGGGAACGACATCTAAGAAGTACG
ATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATGTCTGCCATAAT
ATCACTGTCCAAGACATCAGTGTGACACCGCCCAGTGGCAACTCTCCCAC
TTTCACCTGCAACAATATGGGGAATTCGAATCTGGAGGACATTACGTGTG
CCTGAATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGCCCGCG
CTTTGCGTGTCTAGCAAAACTCCTTCCCCGCCTACGATCTCTGCATATCC
GAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAGCACAA
GCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTGGTATT
CTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTACCACC
GGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAACAACA
TCGATTTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTGATCTC
TGGACGACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTGTTCTG
GCGATTTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGGTGTGA
TTGATGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAGATTCCAGT
GTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCCACCAT
TTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGTTCAACCTCATTGCGA
ACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGAAAAGTGAG
ATATCGGATGCTCCAGCCAAGAACACAGATGGCTGGGACATCTATCGCAG
CTCAAATATCGTGATCCAAGACTCAAGGATAGTCAACACGGACGACTGTG
TATCGTTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCGAATGC
ACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAAGGGGA
AACGGACATCGTTGAAGATCTGTACATCTATAACATATCCATGACAGATG
CATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTGATACG
TCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTTACCTA
TGAATACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTCGCAGT
GCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTTCGAAACTC
GTGATTGAGGATGTCCTTTTCAAGGACTTTAAGGGAACGACATCTAAGAA
GTACGATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATGTCTGCC
ATAATATCACTGTCCAAGACATCAGTGTGACACCGCCCAGTGGCAACTCT
CCCACTTTCACCTGCAACAATATGGGGAATTCGAATCTGGAGGACATTAC
GTGTGCCTGAATGAAGCTCCCCATCCTAGTGACTCTATTTATTACTCTGC
CCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCCCGCCTACGATCTCTGCA
TATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAGAACAG
CACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGCCCCTG
GTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTTTCCTA
CCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTTCTAAA
CAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAGAGGACCTTG
ATCTCTGGACGACCCAGGCATTTCAATACACATTCCAGACTGCGAGTCTG
TTCTGGCGATTTGGAGGCAATAACGTGAACATCTATGGCGATGGGAAGGG
TGTGATTGATGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGAAGATT
CCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATCATGCC
ACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGTTCAACCTCAT
TGCGAACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGTGAAAA
GTGAGATATCGGATGCTCCAGCCAAGAACACAGATGGCTGGGACATCTAT
CGCAGCTCAAATATCGTGATCCAAGACTCAAGGATAGTCAACACGGACGA
CTGTGTATCGTTCAAACCCAACTCCACCCAGATTGTCATCCAAAATCTCG
AATGCACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAATACCAA
GGGGAAACGGACATCGTTGAAGATCTGTACATCTATAACATATCCATGAC
AGATGCATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCCTCCTG
ATACGTCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCAACGTT
ACCTATGAATACATGCAAAGCGAGAATAACGATCACGTCATTTCGGTCTC
GCAGTGCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCCTTCGA
AACTCGTGATTGAGGATGTCCTTTTCAAGGACTTTAAGGGAACGACATCT
AAGAAGTACGATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCGGATGT
CTGCCATAATATCACTGTCCAAGACATCAGTGTGACACCGCCCAGTGGCA
ACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAATCTGGAGGAC
ATTACGTGTGCCTGAATGAAGCTCCCCATCCTAGTGACTCTATTTATTAC
TCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCCCGCCTACGATCT
CTGCATATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGACGCCAG
AACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGATGCTGC
CCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCACCGTTT
TCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCACATTT
CTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAAGAGGA
CCTTGATCTCTGGACGACCCAGGCATTTCAATACACATTCCAGACTGCGA
GTCTGTTCTGGCGATTTGGAGGCAATAACGTGAACATCTATGGCGATGGG
AAGGGTGTGATTGATGGAGCTGGTCAATACTGGTGGAGTGCGATGGCTGA
AGATTCCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACTGCATC
ATGCCACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGTTCAAC
CTCATTGCGAACTCCACGGACATCCTCATCAGTAATATGACAATGTTGGT
GAAAAGTGAGATATCGGATGCTCCAGCCAAGAACACAGATGGCTGGGACA
TCTATCGCAGCTCAAATATCGTGATCCAAGACTCAAGGATAGTCAACACG
GACGACTGTGTATCGTTCAAACCCAACTCCACCCAGATTGTCATCCAAAA
TCTCGAATGCACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGGTCAAT
ACCAAGGGGAAACGGACATCGTTGAAGATCTGTACATCTATAACATATCC
ATGACAGATGCATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGTGTTCC
TCCTGATACGTCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGTCCGCA
ACGTTACCTATGAATACATGCAAAGCGAGAATAACGATCACGTCATTTCG
GTCTCGCAGTGCTATGAGTCGAAGAACCAAACGATGTGCGATTCATATCC
TTCGAAACTCGTGATTGAGGATGTCCTTTTCAAGGACTTTAAGGGAACGA
CATCTAAGAAGTACGATCCTGAGATTGGAGAGTTGACATGTAGTAGTCCG
GATGTCTGCCATAATATCACTGTCCAAGACATCAGTGTGACACCGCCCAG
TGGCAACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAATCTGG
AGGACATTACGTGTGCCTGAATGAAGCTCCCCATCCTAGTGACTCTATTT
ATTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCCCGCCTAC
GATCTCTGCATATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTCTGGAC
GCCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAACAGAT
GCTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGGGGCAC
CGTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGATCTCA
CATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTTTCAAA
GAGGACCTTGATCTCTGGACGACCCAGGCATTTCAATACACATTCCAGAC
TGCGAGTCTGTTCTGGCGATTTGGAGGCAATAACGTGAACATCTATGGCG
ATGGGAAGGGTGTGATTGATGGAGCTGGTCAATACTGGTGGAGTGCGATG
GCTGAAGATTCCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGACGGACT
GCATCATGCCACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAATTGGT
TCAACCTCATTGCGAACTCCACGGACATCCTCATCAGTAATATGACAATG
TTGGTGAAAAGTGAGATATCGGATGCTCCAGCCAAGAACACAGATGGCTG
GGACATCTATCGCAGCTCAAATATCGTGATCCAAGACTCAAGGATAGTCA
ACACGGACGACTGTGTATCGTTCAAACCCAACTCCACCCAGATTGTCATC
CAAAATCTCGAATGCACTGGGTCCCACGGTATTTCTGTCGGCAGCCTGGG
TCAATACCAAGGGGAAACGGACATCGTTGAAGATCTGTACATCTATAACA
TATCCATGACAGATGCATCAGATGTGGCCCGAATCAAGGTCTGGCCTGGT
GTTCCTCCTGATACGTCAGGCTCAACCAGCGGTGGAGGACTAGGCCGCGT
CCGCAACGTTACCTATGAATACATGCAAAGCGAGAATAACGATCACGTCA
TTTCGGTCTCGCAGTGCTATGAGTCGAAGAACCAAACGATGTGCGATTCA
TATCCTTCGAAACTCGTGATTGAGGATGTCCTTTTCAAGGACTTTAAGGG
AACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTTGACATGTAGTA
GTCCGGATGTCTGCCATAATATCACTGTCCAAGACATCAGTGTGACACCG
CCCAGTGGCAACTCTCCCACTTTCACCTGCAACAATATGGGGAATTCGAA
TCTGGAGGACATTACGTGTGCCTGAATGAAGCTCCCCATCCTAGTGACTC
TATTTATTACTCTGCCCGCGCTTTGCGTGTCTAGCAAAACTCCTTCCCCG
CCTACGATCTCTGCATATCCGAAATCTCTAGGGAACTTCAAGCCCGCCTC
TGGACGCCAGAACAGCACAAGCAATGTCTGTGAGGTCAAGCCGAACCAAA
CAGATGCTGCCCCTGGTATTCTTGCCGCAGCCCACACTTGCAACAATGGG
GGCACCGTTTTCCTACCACCGGGTGACTTTGTCGTCGCAACCGCACTGGA
TCTCACATTTCTAAACAACATCGATTTTGCCATCTGGGGCAACATCACTT
TCAAAGAGGACCTTGATCTCTGGACGACCCAGGCATTTCAATACACATTC
CAGACTGCGAGTCTGTTCTGGCGATTTGGAGGCAATAACGTGAACATCTA
TGGCGATGGGAAGGGTGTGATTGATGGAGCTGGTCAATACTGGTGGAGTG
CGATGGCTGAAGATTCCAGTGTCGTGCGTCCTTGCCTCCTGGGCACAGAC
GGACTGCATCATGCCACCATTTCTGGGCTCAAGATGCTCAACTCCCCGAA
TTGGTTCAACCTCATTGCGAACTCCACGGACATCCTCATCAGTAATATGA
CAATGTTGGTGAAAAGTGAGATATCGGATGCTCCAGCCAAGAACACAGAT
GGCTGGGACATCTATCGCAGCTCAAATATCGTGATCCAAGACTCAAGGAT
AGTCAACACGGACGACTGTGTATCGTTCAAACCCAACTCCACCCAGATTG
TCATCCAAAATCTCGAATGCACTGGGTCCCACGGTATTTCTGTCGGCAGC
CTGGGTCAATACCAAGGGGAAACGGACATCGTTGAAGATCTGTACATCTA
TAACATATCCATGACAGATGCATCAGATGTGGCCCGAATCAAGGTCTGGC
CTGGTGTTCCTCCTGATACGTCAGGCTCAACCAGCGGTGGAGGACTAGGC
CGCGTCCGCAACGTTACCTATGAATACATGCAAAGCGAGAATAACGATCA
CGTCATTTCGGTCTCGCAGTGCTATGAGTCGAAGAACCAAACGATGTGCG
ATTCATATCCTTCGAAACTCGTGATTGAGGATGTCCTTTTCAAGGACTTT
AAGGGAACGACATCTAAGAAGTACGATCCTGAGATTGGAGAGTTGACATG
TAGTAGTCCGGATGTCTGCCATAATATCACTGTCCAAGACATCAGTGTGA
CACCGCCCAGTGGCAACTCTCCCACTTTCACCTGCAACAATATGGGGAAT
TCGAATCTGGAGGACATTACGTGTGCCTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002565KJC3_002565Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002565-T1KJC3_002565-T1-proteinAspergillus niger KJC3polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002565-T1.exon1KJC3_002565-T1.exon1Aspergillus niger KJC3exon
KJC3_002565-T1.exon2KJC3_002565-T1.exon2Aspergillus niger KJC3exon
KJC3_002565-T1.exon3KJC3_002565-T1.exon3Aspergillus niger KJC3exon
KJC3_002565-T1.exon4KJC3_002565-T1.exon4Aspergillus niger KJC3exon
KJC3_002565-T1.exon5KJC3_002565-T1.exon5Aspergillus niger KJC3exon
KJC3_002565-T1.exon6KJC3_002565-T1.exon6Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002565-T1.cdsKJC3_002565-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002565-T1.utr3p1KJC3_002565-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteSECRETED:SignalP(1-19)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:2931704..2933514 +
Powered by Drupal