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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3023222..3025454- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002597-T1 ID=KJC3_002597-T1|Name=KJC3_002597-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2233bp|location=Sequence derived from alignment at ch2:3023222..3025454- (Aspergillus niger KJC3)
ATGGACAGGCCTTCCAAGCGGCCGCGGCTGTCGATGGCCTGCAACATCTG
TCGCCAGCGCAAGGTCAAATGCGACGCAGAGTATCCCAAGTGCCGCAATT
GCCGCCTGCGCAACCAACAGTGTATCACCACCGATCCTCAGCGACCAGGA
GTGACTGGCATTCGAGAATGGCTGGATATACCGGACAAACAGACCCCTCA
GAACGAAGACCAGCCTCAGCATCCGGCAGTAGGCGATCAGAACCACCAAG
AGGCGACCGACTCCCCACAGAAGCTGTCGCCAAACGAGGTCTCACCTGTG
CATCATCCGTTCGACGTCTCATTCAATGTGGAACATGGCACCGACAAGGT
TAAGATCATGGGTGGGAGTAGTTCACAATGTTTGGCGAAATCTCTTGATG
TCTATTTCAAGGCTGCCCGTCTCAAGCCGGTATCGGGCTGCTTCCGGTAC
GGGATGAGACATGCGGAGGAACTCGATCTGCCTTTATCTCTGTCTTTGCC
GGAGTTACCGGACCGTGACCGACGAGAACGCTATCTATCCGCCTATATCT
CTCGCATACACCCTCTGTATCCTATCTTCAATACAACCCGACTCCGCGCG
GGTACTGACCTCTTTGCCACGGCGGGTGGCTTCACCAATCTTCCGCGCGA
GCAAATCCCACGAATCGTGTCAGCGTACTTGATCATGAGCCTAGGAGCAG
ACGAGATAGGCCAGGGCGCAACCGTGGACGGTGATCGCTACTTGCAAGCA
GCGGCGTGTCTACTGTCCCATGTTATTATCATCCCGTATCTCCCGACGGT
GCAGACATTGCTCCTTTTCACCATGGTATATCGCGGACGGAACCAGGAAG
GTCTGGCCTGGCAAACACTAGGCATGGCCATTCGTACTGCTTATACACTG
GGCATCAACCGGACATCTACATCCAATTCCGAAGGAAAGAACATCGAACG
ACGCGTGTGGGCAGTCTGTTGGTGCCTGGAAAAGATGATGCATCTGGAAT
CGGGACGACCAACCGTCATCGGATATCAGCATCCTAGGCCAGAGGATGCT
CTAGGAGAGAGTAAATTTCTGCAGTGGCACGTCGAGCTTGGGGAATACCA
AGGCAACATCAGTGACCATCTTTACAGCCATCAATCAGGGACAAGGGATG
TGCGACAGATACTCTTGGATACAGCGCGACTTGACCGCGAACTGTTGTCC
TGGGCCAATCGGGTCCCTAGTGACCTGCGTCCGGGGAGCGATATCTTCTG
CGCGGACGAAGAGTTTCATGCAGCCGCATTTCTGTCCATCCAGTACCACA
GCACGCTGATCTCGCTGCATCGCGCGGCCCTCATTGCCCCGACATTGAGC
TTTGAGGAAGAAGTGGCAAGGTATTGCTCCGATGAGCCATCACAGTTTCG
AATGCGTCTTGGAGAGTCAATCTGCGTGAGCAGTGCTCGAGCGATTGCTA
AACTTAGTGTCCAGCTGTCGGAACGCAAGGCAGACTCGCAGATCATTACG
GCTGGACCGTCCCTTTTGGCTTGCATTGTGCTGGCCATCTTCCTGATTAA
GCATCCAGGTTCTCGGTTGCAGGCCATGGATTTGCAGGTAAGATACGCTT
TACCTTGCTGAGAATGAAGTACTGACGAAGGCAGCTGCTCAAAGCGTGTC
TAGAGTATAGTAGTCAGCACCTATCAAGATACGACCCCGACCCACGTTTT
ATAGAAGGTATGATAGCACGAAGCATAACACAGATCCAACCAAACTAAGC
GAGATAGGTATCGCGGCTATCTACGAACAATGCAACGCCCATCTCCGGTC
CTGGTCGGCCGCAGAAGCCAAAAGACGGCCTCAAAGTCGTGACAGTCTCG
CAAAACTTAATCCGCTTCCCACACCAGCAGTTGACGACTCGCTGCCACCT
TGGAGACTTACCGGAGTGATGCAGCCAAGCGATCTGCACAAACAGAGCAG
CGGTGGATATCAGTCTCAGCGTGTGATACAATCAGCTGTCTCTACACCTG
CTATCGACCATGAAGGACATGACCATCTAGACTCATTAGGATTCTCCAGC
ACATCAATGTTAGATGGGTTCGTCGCGGAGGGTGTCAACGTGGATCAAGT
ATTTCCCTTTGAGGGATACAATGTGGAGGAACTGTGGAACTGGATGGGAT
GCCTGGATAGTCCTGGATCAATGCCTGATATACGGTAGTTCTATAGGGAA
GATACGTAACAACTGTAACTAGTAAGAACCAAG back to topCoding sequence (CDS) from alignment at ch2:3023222..3025454- >KJC3_002597-T1 ID=KJC3_002597-T1|Name=KJC3_002597-T1|organism=Aspergillus niger KJC3|type=CDS|length=6273bp|location=Sequence derived from alignment at ch2:3023222..3025454- (Aspergillus niger KJC3)
GTATCGCGGCTATCTACGAACAATGCAACGCCCATCTCCGGTCCTGGTCG
GCCGCAGAAGCCAAAAGACGGCCTCAAAGTCGTGACAGTCTCGCAAAACT
TAATCCGCTTCCCACACCAGCAGTTGACGACTCGCTGCCACCTTGGAGAC
TTACCGGAGTGATGCAGCCAAGCGATCTGCACAAACAGAGCAGCGGTGGA
TATCAGTCTCAGCGTGTGATACAATCAGCTGTCTCTACACCTGCTATCGA
CCATGAAGGACATGACCATCTAGACTCATTAGGATTCTCCAGCACATCAA
TGTTAGATGGGTTCGTCGCGGAGGGTGTCAACGTGGATCAAGTATTTCCC
TTTGAGGGATACAATGTGGAGGAACTGTGGAACTGGATGGGATGCCTGGA
TAGTCCTGGATCAATGCCTGATATACGGTAGCTGCTCAAAGCGTGTCTAG
AGTATAGTAGTCAGCACCTATCAAGATACGACCCCGACCCACGTTTTATA
GAAGATGGACAGGCCTTCCAAGCGGCCGCGGCTGTCGATGGCCTGCAACA
TCTGTCGCCAGCGCAAGGTCAAATGCGACGCAGAGTATCCCAAGTGCCGC
AATTGCCGCCTGCGCAACCAACAGTGTATCACCACCGATCCTCAGCGACC
AGGAGTGACTGGCATTCGAGAATGGCTGGATATACCGGACAAACAGACCC
CTCAGAACGAAGACCAGCCTCAGCATCCGGCAGTAGGCGATCAGAACCAC
CAAGAGGCGACCGACTCCCCACAGAAGCTGTCGCCAAACGAGGTCTCACC
TGTGCATCATCCGTTCGACGTCTCATTCAATGTGGAACATGGCACCGACA
AGGTTAAGATCATGGGTGGGAGTAGTTCACAATGTTTGGCGAAATCTCTT
GATGTCTATTTCAAGGCTGCCCGTCTCAAGCCGGTATCGGGCTGCTTCCG
GTACGGGATGAGACATGCGGAGGAACTCGATCTGCCTTTATCTCTGTCTT
TGCCGGAGTTACCGGACCGTGACCGACGAGAACGCTATCTATCCGCCTAT
ATCTCTCGCATACACCCTCTGTATCCTATCTTCAATACAACCCGACTCCG
CGCGGGTACTGACCTCTTTGCCACGGCGGGTGGCTTCACCAATCTTCCGC
GCGAGCAAATCCCACGAATCGTGTCAGCGTACTTGATCATGAGCCTAGGA
GCAGACGAGATAGGCCAGGGCGCAACCGTGGACGGTGATCGCTACTTGCA
AGCAGCGGCGTGTCTACTGTCCCATGTTATTATCATCCCGTATCTCCCGA
CGGTGCAGACATTGCTCCTTTTCACCATGGTATATCGCGGACGGAACCAG
GAAGGTCTGGCCTGGCAAACACTAGGCATGGCCATTCGTACTGCTTATAC
ACTGGGCATCAACCGGACATCTACATCCAATTCCGAAGGAAAGAACATCG
AACGACGCGTGTGGGCAGTCTGTTGGTGCCTGGAAAAGATGATGCATCTG
GAATCGGGACGACCAACCGTCATCGGATATCAGCATCCTAGGCCAGAGGA
TGCTCTAGGAGAGAGTAAATTTCTGCAGTGGCACGTCGAGCTTGGGGAAT
ACCAAGGCAACATCAGTGACCATCTTTACAGCCATCAATCAGGGACAAGG
GATGTGCGACAGATACTCTTGGATACAGCGCGACTTGACCGCGAACTGTT
GTCCTGGGCCAATCGGGTCCCTAGTGACCTGCGTCCGGGGAGCGATATCT
TCTGCGCGGACGAAGAGTTTCATGCAGCCGCATTTCTGTCCATCCAGTAC
CACAGCACGCTGATCTCGCTGCATCGCGCGGCCCTCATTGCCCCGACATT
GAGCTTTGAGGAAGAAGTGGCAAGGTATTGCTCCGATGAGCCATCACAGT
TTCGAATGCGTCTTGGAGAGTCAATCTGCGTGAGCAGTGCTCGAGCGATT
GCTAAACTTAGTGTCCAGCTGTCGGAACGCAAGGCAGACTCGCAGATCAT
TACGGCTGGACCGTCCCTTTTGGCTTGCATTGTGCTGGCCATCTTCCTGA
TTAAGCATCCAGGTTCTCGGTTGCAGGCCATGGATTTGCAGGTATCGCGG
CTATCTACGAACAATGCAACGCCCATCTCCGGTCCTGGTCGGCCGCAGAA
GCCAAAAGACGGCCTCAAAGTCGTGACAGTCTCGCAAAACTTAATCCGCT
TCCCACACCAGCAGTTGACGACTCGCTGCCACCTTGGAGACTTACCGGAG
TGATGCAGCCAAGCGATCTGCACAAACAGAGCAGCGGTGGATATCAGTCT
CAGCGTGTGATACAATCAGCTGTCTCTACACCTGCTATCGACCATGAAGG
ACATGACCATCTAGACTCATTAGGATTCTCCAGCACATCAATGTTAGATG
GGTTCGTCGCGGAGGGTGTCAACGTGGATCAAGTATTTCCCTTTGAGGGA
TACAATGTGGAGGAACTGTGGAACTGGATGGGATGCCTGGATAGTCCTGG
ATCAATGCCTGATATACGGTAGCTGCTCAAAGCGTGTCTAGAGTATAGTA
GTCAGCACCTATCAAGATACGACCCCGACCCACGTTTTATAGAAGATGGA
CAGGCCTTCCAAGCGGCCGCGGCTGTCGATGGCCTGCAACATCTGTCGCC
AGCGCAAGGTCAAATGCGACGCAGAGTATCCCAAGTGCCGCAATTGCCGC
CTGCGCAACCAACAGTGTATCACCACCGATCCTCAGCGACCAGGAGTGAC
TGGCATTCGAGAATGGCTGGATATACCGGACAAACAGACCCCTCAGAACG
AAGACCAGCCTCAGCATCCGGCAGTAGGCGATCAGAACCACCAAGAGGCG
ACCGACTCCCCACAGAAGCTGTCGCCAAACGAGGTCTCACCTGTGCATCA
TCCGTTCGACGTCTCATTCAATGTGGAACATGGCACCGACAAGGTTAAGA
TCATGGGTGGGAGTAGTTCACAATGTTTGGCGAAATCTCTTGATGTCTAT
TTCAAGGCTGCCCGTCTCAAGCCGGTATCGGGCTGCTTCCGGTACGGGAT
GAGACATGCGGAGGAACTCGATCTGCCTTTATCTCTGTCTTTGCCGGAGT
TACCGGACCGTGACCGACGAGAACGCTATCTATCCGCCTATATCTCTCGC
ATACACCCTCTGTATCCTATCTTCAATACAACCCGACTCCGCGCGGGTAC
TGACCTCTTTGCCACGGCGGGTGGCTTCACCAATCTTCCGCGCGAGCAAA
TCCCACGAATCGTGTCAGCGTACTTGATCATGAGCCTAGGAGCAGACGAG
ATAGGCCAGGGCGCAACCGTGGACGGTGATCGCTACTTGCAAGCAGCGGC
GTGTCTACTGTCCCATGTTATTATCATCCCGTATCTCCCGACGGTGCAGA
CATTGCTCCTTTTCACCATGGTATATCGCGGACGGAACCAGGAAGGTCTG
GCCTGGCAAACACTAGGCATGGCCATTCGTACTGCTTATACACTGGGCAT
CAACCGGACATCTACATCCAATTCCGAAGGAAAGAACATCGAACGACGCG
TGTGGGCAGTCTGTTGGTGCCTGGAAAAGATGATGCATCTGGAATCGGGA
CGACCAACCGTCATCGGATATCAGCATCCTAGGCCAGAGGATGCTCTAGG
AGAGAGTAAATTTCTGCAGTGGCACGTCGAGCTTGGGGAATACCAAGGCA
ACATCAGTGACCATCTTTACAGCCATCAATCAGGGACAAGGGATGTGCGA
CAGATACTCTTGGATACAGCGCGACTTGACCGCGAACTGTTGTCCTGGGC
CAATCGGGTCCCTAGTGACCTGCGTCCGGGGAGCGATATCTTCTGCGCGG
ACGAAGAGTTTCATGCAGCCGCATTTCTGTCCATCCAGTACCACAGCACG
CTGATCTCGCTGCATCGCGCGGCCCTCATTGCCCCGACATTGAGCTTTGA
GGAAGAAGTGGCAAGGTATTGCTCCGATGAGCCATCACAGTTTCGAATGC
GTCTTGGAGAGTCAATCTGCGTGAGCAGTGCTCGAGCGATTGCTAAACTT
AGTGTCCAGCTGTCGGAACGCAAGGCAGACTCGCAGATCATTACGGCTGG
ACCGTCCCTTTTGGCTTGCATTGTGCTGGCCATCTTCCTGATTAAGCATC
CAGGTTCTCGGTTGCAGGCCATGGATTTGCAGGTATCGCGGCTATCTACG
AACAATGCAACGCCCATCTCCGGTCCTGGTCGGCCGCAGAAGCCAAAAGA
CGGCCTCAAAGTCGTGACAGTCTCGCAAAACTTAATCCGCTTCCCACACC
AGCAGTTGACGACTCGCTGCCACCTTGGAGACTTACCGGAGTGATGCAGC
CAAGCGATCTGCACAAACAGAGCAGCGGTGGATATCAGTCTCAGCGTGTG
ATACAATCAGCTGTCTCTACACCTGCTATCGACCATGAAGGACATGACCA
TCTAGACTCATTAGGATTCTCCAGCACATCAATGTTAGATGGGTTCGTCG
CGGAGGGTGTCAACGTGGATCAAGTATTTCCCTTTGAGGGATACAATGTG
GAGGAACTGTGGAACTGGATGGGATGCCTGGATAGTCCTGGATCAATGCC
TGATATACGGTAGCTGCTCAAAGCGTGTCTAGAGTATAGTAGTCAGCACC
TATCAAGATACGACCCCGACCCACGTTTTATAGAAGATGGACAGGCCTTC
CAAGCGGCCGCGGCTGTCGATGGCCTGCAACATCTGTCGCCAGCGCAAGG
TCAAATGCGACGCAGAGTATCCCAAGTGCCGCAATTGCCGCCTGCGCAAC
CAACAGTGTATCACCACCGATCCTCAGCGACCAGGAGTGACTGGCATTCG
AGAATGGCTGGATATACCGGACAAACAGACCCCTCAGAACGAAGACCAGC
CTCAGCATCCGGCAGTAGGCGATCAGAACCACCAAGAGGCGACCGACTCC
CCACAGAAGCTGTCGCCAAACGAGGTCTCACCTGTGCATCATCCGTTCGA
CGTCTCATTCAATGTGGAACATGGCACCGACAAGGTTAAGATCATGGGTG
GGAGTAGTTCACAATGTTTGGCGAAATCTCTTGATGTCTATTTCAAGGCT
GCCCGTCTCAAGCCGGTATCGGGCTGCTTCCGGTACGGGATGAGACATGC
GGAGGAACTCGATCTGCCTTTATCTCTGTCTTTGCCGGAGTTACCGGACC
GTGACCGACGAGAACGCTATCTATCCGCCTATATCTCTCGCATACACCCT
CTGTATCCTATCTTCAATACAACCCGACTCCGCGCGGGTACTGACCTCTT
TGCCACGGCGGGTGGCTTCACCAATCTTCCGCGCGAGCAAATCCCACGAA
TCGTGTCAGCGTACTTGATCATGAGCCTAGGAGCAGACGAGATAGGCCAG
GGCGCAACCGTGGACGGTGATCGCTACTTGCAAGCAGCGGCGTGTCTACT
GTCCCATGTTATTATCATCCCGTATCTCCCGACGGTGCAGACATTGCTCC
TTTTCACCATGGTATATCGCGGACGGAACCAGGAAGGTCTGGCCTGGCAA
ACACTAGGCATGGCCATTCGTACTGCTTATACACTGGGCATCAACCGGAC
ATCTACATCCAATTCCGAAGGAAAGAACATCGAACGACGCGTGTGGGCAG
TCTGTTGGTGCCTGGAAAAGATGATGCATCTGGAATCGGGACGACCAACC
GTCATCGGATATCAGCATCCTAGGCCAGAGGATGCTCTAGGAGAGAGTAA
ATTTCTGCAGTGGCACGTCGAGCTTGGGGAATACCAAGGCAACATCAGTG
ACCATCTTTACAGCCATCAATCAGGGACAAGGGATGTGCGACAGATACTC
TTGGATACAGCGCGACTTGACCGCGAACTGTTGTCCTGGGCCAATCGGGT
CCCTAGTGACCTGCGTCCGGGGAGCGATATCTTCTGCGCGGACGAAGAGT
TTCATGCAGCCGCATTTCTGTCCATCCAGTACCACAGCACGCTGATCTCG
CTGCATCGCGCGGCCCTCATTGCCCCGACATTGAGCTTTGAGGAAGAAGT
GGCAAGGTATTGCTCCGATGAGCCATCACAGTTTCGAATGCGTCTTGGAG
AGTCAATCTGCGTGAGCAGTGCTCGAGCGATTGCTAAACTTAGTGTCCAG
CTGTCGGAACGCAAGGCAGACTCGCAGATCATTACGGCTGGACCGTCCCT
TTTGGCTTGCATTGTGCTGGCCATCTTCCTGATTAAGCATCCAGGTTCTC
GGTTGCAGGCCATGGATTTGCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002597-T1.utr3p1 | KJC3_002597-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3023222..3025454 - |
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