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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3101439..3102741- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002623-T1 ID=KJC3_002623-T1|Name=KJC3_002623-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1303bp|location=Sequence derived from alignment at ch2:3101439..3102741- (Aspergillus niger KJC3)
CCCCCACTTATTTATTTTTCTCTTCTTCCCCTCCTCAGAATCTCGTCTGG
TTCTCTCAATTGCATTTTCTTCTTCTCCTCTTTCTATATACGACAGTTTA
CATACCCTATATATACAATGTCCAGCCAACCTCTTACCTGGGTCGTCACC
GGCTGCTCCTCTGGCATCGGCGAAGCCCTAGTCCGCGCCATCCTCGCCCA
GGTGAGAAACCCCCGCATTTGACCCATCCGGAGTTTCTGCTCACACAGGT
CAATAAACAAACAGGGTGACAAAGTCATCGCAACAGCTCGCGCCCGCAAC
AATGTCAGCGGAGCCGACCGTCTCTCAGCTCTGAAAGAAGCCGGAGCCGC
AGTGTTCGAGCTCGACGTGAGCCGGCCCCAGGAAGAATTAGACGCCAAGG
CACGCGAAATCTGGGAGATCTACGGAAAAGTCGACGTACTAGTCAACAAC
GCGGGCTACATCGACGCAGGGCTTGTCGAAGAAATTACGTCAGTCCTTCC
TCCGTCATATACCGCACTCACTGTACTAACAGACCACCCAGCGAACCCTT
TTTGATTGATGCCCTCCGCGCCAACGCCTTCGGTCCTCTCAACGTATCCC
GCGCCTTCCTGCCCCTCATGCGCGCCCAGAAATCTGGAACCGTGCTGTTC
GCCAGCAGCCTTGGAGTCTACTTCGGTGCGCCCGGCGCATCCTGCTACAC
CGGAGGCAAGGGTCTCCTGGAGGCGGTGGTGCCCAATCTGGCCCTGGAGC
TGGCGGCATTCGGAATCCGCACTTCGCTACTCACCTACGGCTACTACCGT
ACGGAGGTTATGAACCCTGGAAACTTCCACAGCCGGGCGCCTCGCCCACT
GCCGGAGTATGAGGAGCTCCGGGGTCTGGTGGAAGCTGGGTGTGCGGCTA
CGAACCACAACCAGCAGGGTGATCCGGCGAAGGCGGCGAAGGTGGTGGTG
GAGGCAGTCAAGGGAACGGGCAAGTTTGAGGGAAAGCAATTGCCTTTGAG
ATTGCCGATTGGAAAGGATGCTGTTGCTGCGATGCGGAAGGCTTGTGAGG
AGAGGTTGGCTATTTGTGATGAGTTTGAGGGGCTGGTGGATCAGACGGAT
ATCTAGATGTTCAGGGGTAGAGTATATACCATTCACAGCCGGGTTAGTGT
CGTTGAAACACGTTATTTACACAGTTCGAGTTCTGTGCGATGGGATGAAG
CGTTTGTTGATGTATATTTCACGTAGATACAAGTGCTTTAATGTTATCTC
TTTCTGTATAAACTGAGCCTTGTTATATATTGAGCGCAACTTGTACGACC
AAG back to topCoding sequence (CDS) from alignment at ch2:3101439..3102741- >KJC3_002623-T1 ID=KJC3_002623-T1|Name=KJC3_002623-T1|organism=Aspergillus niger KJC3|type=CDS|length=2619bp|location=Sequence derived from alignment at ch2:3101439..3102741- (Aspergillus niger KJC3)
CGAACCCTTTTTGATTGATGCCCTCCGCGCCAACGCCTTCGGTCCTCTCA
ACGTATCCCGCGCCTTCCTGCCCCTCATGCGCGCCCAGAAATCTGGAACC
GTGCTGTTCGCCAGCAGCCTTGGAGTCTACTTCGGTGCGCCCGGCGCATC
CTGCTACACCGGAGGCAAGGGTCTCCTGGAGGCGGTGGTGCCCAATCTGG
CCCTGGAGCTGGCGGCATTCGGAATCCGCACTTCGCTACTCACCTACGGC
TACTACCGTACGGAGGTTATGAACCCTGGAAACTTCCACAGCCGGGCGCC
TCGCCCACTGCCGGAGTATGAGGAGCTCCGGGGTCTGGTGGAAGCTGGGT
GTGCGGCTACGAACCACAACCAGCAGGGTGATCCGGCGAAGGCGGCGAAG
GTGGTGGTGGAGGCAGTCAAGGGAACGGGCAAGTTTGAGGGAAAGCAATT
GCCTTTGAGATTGCCGATTGGAAAGGATGCTGTTGCTGCGATGCGGAAGG
CTTGTGAGGAGAGGTTGGCTATTTGTGATGAGTTTGAGGGGCTGGTGGAT
CAGACGGATATCTAGGGTGACAAAGTCATCGCAACAGCTCGCGCCCGCAA
CAATGTCAGCGGAGCCGACCGTCTCTCAGCTCTGAAAGAAGCCGGAGCCG
CAGTGTTCGAGCTCGACGTGAGCCGGCCCCAGGAAGAATTAGACGCCAAG
GCACGCGAAATCTGGGAGATCTACGGAAAAGTCGACGTACTAGTCAACAA
CGCGGGCTACATCGACGCAGGGCTTGTCGAAGAAATTACATGTCCAGCCA
ACCTCTTACCTGGGTCGTCACCGGCTGCTCCTCTGGCATCGGCGAAGCCC
TAGTCCGCGCCATCCTCGCCCAGCGAACCCTTTTTGATTGATGCCCTCCG
CGCCAACGCCTTCGGTCCTCTCAACGTATCCCGCGCCTTCCTGCCCCTCA
TGCGCGCCCAGAAATCTGGAACCGTGCTGTTCGCCAGCAGCCTTGGAGTC
TACTTCGGTGCGCCCGGCGCATCCTGCTACACCGGAGGCAAGGGTCTCCT
GGAGGCGGTGGTGCCCAATCTGGCCCTGGAGCTGGCGGCATTCGGAATCC
GCACTTCGCTACTCACCTACGGCTACTACCGTACGGAGGTTATGAACCCT
GGAAACTTCCACAGCCGGGCGCCTCGCCCACTGCCGGAGTATGAGGAGCT
CCGGGGTCTGGTGGAAGCTGGGTGTGCGGCTACGAACCACAACCAGCAGG
GTGATCCGGCGAAGGCGGCGAAGGTGGTGGTGGAGGCAGTCAAGGGAACG
GGCAAGTTTGAGGGAAAGCAATTGCCTTTGAGATTGCCGATTGGAAAGGA
TGCTGTTGCTGCGATGCGGAAGGCTTGTGAGGAGAGGTTGGCTATTTGTG
ATGAGTTTGAGGGGCTGGTGGATCAGACGGATATCTAGGGTGACAAAGTC
ATCGCAACAGCTCGCGCCCGCAACAATGTCAGCGGAGCCGACCGTCTCTC
AGCTCTGAAAGAAGCCGGAGCCGCAGTGTTCGAGCTCGACGTGAGCCGGC
CCCAGGAAGAATTAGACGCCAAGGCACGCGAAATCTGGGAGATCTACGGA
AAAGTCGACGTACTAGTCAACAACGCGGGCTACATCGACGCAGGGCTTGT
CGAAGAAATTACATGTCCAGCCAACCTCTTACCTGGGTCGTCACCGGCTG
CTCCTCTGGCATCGGCGAAGCCCTAGTCCGCGCCATCCTCGCCCAGCGAA
CCCTTTTTGATTGATGCCCTCCGCGCCAACGCCTTCGGTCCTCTCAACGT
ATCCCGCGCCTTCCTGCCCCTCATGCGCGCCCAGAAATCTGGAACCGTGC
TGTTCGCCAGCAGCCTTGGAGTCTACTTCGGTGCGCCCGGCGCATCCTGC
TACACCGGAGGCAAGGGTCTCCTGGAGGCGGTGGTGCCCAATCTGGCCCT
GGAGCTGGCGGCATTCGGAATCCGCACTTCGCTACTCACCTACGGCTACT
ACCGTACGGAGGTTATGAACCCTGGAAACTTCCACAGCCGGGCGCCTCGC
CCACTGCCGGAGTATGAGGAGCTCCGGGGTCTGGTGGAAGCTGGGTGTGC
GGCTACGAACCACAACCAGCAGGGTGATCCGGCGAAGGCGGCGAAGGTGG
TGGTGGAGGCAGTCAAGGGAACGGGCAAGTTTGAGGGAAAGCAATTGCCT
TTGAGATTGCCGATTGGAAAGGATGCTGTTGCTGCGATGCGGAAGGCTTG
TGAGGAGAGGTTGGCTATTTGTGATGAGTTTGAGGGGCTGGTGGATCAGA
CGGATATCTAGGGTGACAAAGTCATCGCAACAGCTCGCGCCCGCAACAAT
GTCAGCGGAGCCGACCGTCTCTCAGCTCTGAAAGAAGCCGGAGCCGCAGT
GTTCGAGCTCGACGTGAGCCGGCCCCAGGAAGAATTAGACGCCAAGGCAC
GCGAAATCTGGGAGATCTACGGAAAAGTCGACGTACTAGTCAACAACGCG
GGCTACATCGACGCAGGGCTTGTCGAAGAAATTACATGTCCAGCCAACCT
CTTACCTGGGTCGTCACCGGCTGCTCCTCTGGCATCGGCGAAGCCCTAGT
CCGCGCCATCCTCGCCCAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002623-T1.utr3p1 | KJC3_002623-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002623-T1.utr5p1 | KJC3_002623-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3101439..3102741 - |
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