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KJC3_002642-T1, KJC3_002642-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002642-T1
Unique NameKJC3_002642-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:3150165..3152051-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002642-T1 ID=KJC3_002642-T1|Name=KJC3_002642-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1887bp|location=Sequence derived from alignment at ch2:3150165..3152051- (Aspergillus niger KJC3)
CGAAGACTCATCCCGACTCATCCACCTTTTCCTATCCCATTTGCCTTTAC
TCGCTCGTGTGGATTAGTCTTTTCAATCCATATATATATTTACAAGTGCC
AACCGGGATAGCCACTTGTTTTCGATACCCAGCGGTCACATCATTTGAGA
TTGTGCCCCGCTTCGTCCATCCCACAATCATTTAACGACCCCTACACGGC
TACTTTATTTCATCGTGATACCCCTGCGTTGTTCCGCCGATTTTCTCAAA
GATGGACGCCTCCGCCTCTTCTCTCCCCTACACCTGCAACACTTGCCTTG
TTGCTTTCCGCGGCAGCGATGCACAGCGGGGGCACATGCGCACCGACTGG
CAGTAAGTTTCTTCATATCACCGCTAGGTTAGCCTGCAGGAACTGATTCC
GTCTGCACTAGCTTGTATAACATGAAGCGTCGGATTGCCTCTCTTCCCCC
CGTGTCCCAGGAAACCTTCAACGAAAAGGTCCTCGTTGCCAAAGCCACCA
CCACTGCCGCGGCCGCCAAGGCATCGTTCGAGACGACCTGTGTCGCTTGC
CAGAAGACCTTCTACAGCGAGAACTCCTACCAGAACCATATCAAGAGCTC
CAAGCACAAGGCTCGCGAGGCCCGCATGAGCCGAGACAATGCCGACGAGT
CGTCCTCCGTCATGAGCTCCACTTTCTCCCTGGGAGAACCCATCAACAAG
CCCCGCGTCGGAGAGTCCGAGGTCAACAAGGTCGCCGAGACCCTCAAGGA
TGCTACCATCAAGGAGGAGAGCAATGAAGACGAGGAGATGTCTGATGATG
GATTCTTTGCGTCTCGTTGTCTTTTCTGTCTGCAGAAGTCAGCCAATGTT
GAAGAGAACACCGAGCACATGTTCAAGACTCACGGCATGTTCATCCCCGA
GAAGGACTACCTCGTTGACCTTGAGGGTCTTCTCCGCTACCTGTGGCGCA
AGATCAACGAAAACAGCGAATGTCTCTACTGCCATATGATCCGGAACACC
CCCGAAGGCATCCGCACCCACATGAAGGACAAGGGCCACTGCATGATCGC
ATTCGAGTCCGAGGCCGAGCAGATCGAGATCGGCCAGTACTACGACTTCC
GCAGCACCTACACAGATGACGAAGAGTGGGAGTCCACCGGCAGCGAGACA
CATGAGGAAGGAGGCGTCAAGGTTGACGGCGAAGACGAGGGATGGGAGAC
AGACGCCTCATCCATGGACGAGGATGAGGACGACCTCGACAACCGCAAGC
GCGCGCCTGTCGTCTACGCCACCGACTACGAGCTGCATCTTCCCTCCGGT
CGCAGCGTCGGCCACCGCTCCCTCGCCAAATACTACCGCCAGAACCTGCA
CAACTACCCCACCGCAGAGGAACGTGCCGAGCGCCAACTTGCCATCGAGA
ACGGCGAGATTGAGGAAGAGGAGCCGAAGCCTCGTGGCCGCAACCTCAAC
CGTGCGCTTATCACCCGTGCCAATGGCGGTACTGGTATGATTGGAGTGAC
GGACTCTCAGAAGAAGGAGGTGATGATCACCGAGCGCAAGGAGCGCCAGA
GAGCCATGCGGCAAGAGCAGCGCTTCACGGCACGGGTCAACCGGCAAGCC
AACCACCAGAAACACTTCAGAGTAAGTTTACCGCCCGAGGTTGTTCTAAA
TTTCATGATACTAATCAGATGGTATAGGATCCTCTCCTGCAATGATCTCA
TACATTTCGTCTTCTTGCATCGTATGTTGATGAGTCTATGAATCATTTCA
GGCTGTTTGTTTCTTTGGGTTATTCTCTCTGCATTGCCGTGCTGCTGGCA
TCGTCTGTTTATGGAGTTGTGGTTGGGTCCATGCACATACTTTATGATAA
AAGTAGGGTGAATAAATAGAGACGGTTCTTTTTGGAC
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Coding sequence (CDS) from alignment at ch2:3150165..3152051-

>KJC3_002642-T1 ID=KJC3_002642-T1|Name=KJC3_002642-T1|organism=Aspergillus niger KJC3|type=CDS|length=3987bp|location=Sequence derived from alignment at ch2:3150165..3152051- (Aspergillus niger KJC3)
GATCCTCTCCTGCAATGACTTGTATAACATGAAGCGTCGGATTGCCTCTC
TTCCCCCCGTGTCCCAGGAAACCTTCAACGAAAAGGTCCTCGTTGCCAAA
GCCACCACCACTGCCGCGGCCGCCAAGGCATCGTTCGAGACGACCTGTGT
CGCTTGCCAGAAGACCTTCTACAGCGAGAACTCCTACCAGAACCATATCA
AGAGCTCCAAGCACAAGGCTCGCGAGGCCCGCATGAGCCGAGACAATGCC
GACGAGTCGTCCTCCGTCATGAGCTCCACTTTCTCCCTGGGAGAACCCAT
CAACAAGCCCCGCGTCGGAGAGTCCGAGGTCAACAAGGTCGCCGAGACCC
TCAAGGATGCTACCATCAAGGAGGAGAGCAATGAAGACGAGGAGATGTCT
GATGATGGATTCTTTGCGTCTCGTTGTCTTTTCTGTCTGCAGAAGTCAGC
CAATGTTGAAGAGAACACCGAGCACATGTTCAAGACTCACGGCATGTTCA
TCCCCGAGAAGGACTACCTCGTTGACCTTGAGGGTCTTCTCCGCTACCTG
TGGCGCAAGATCAACGAAAACAGCGAATGTCTCTACTGCCATATGATCCG
GAACACCCCCGAAGGCATCCGCACCCACATGAAGGACAAGGGCCACTGCA
TGATCGCATTCGAGTCCGAGGCCGAGCAGATCGAGATCGGCCAGTACTAC
GACTTCCGCAGCACCTACACAGATGACGAAGAGTGGGAGTCCACCGGCAG
CGAGACACATGAGGAAGGAGGCGTCAAGGTTGACGGCGAAGACGAGGGAT
GGGAGACAGACGCCTCATCCATGGACGAGGATGAGGACGACCTCGACAAC
CGCAAGCGCGCGCCTGTCGTCTACGCCACCGACTACGAGCTGCATCTTCC
CTCCGGTCGCAGCGTCGGCCACCGCTCCCTCGCCAAATACTACCGCCAGA
ACCTGCACAACTACCCCACCGCAGAGGAACGTGCCGAGCGCCAACTTGCC
ATCGAGAACGGCGAGATTGAGGAAGAGGAGCCGAAGCCTCGTGGCCGCAA
CCTCAACCGTGCGCTTATCACCCGTGCCAATGGCGGTACTGGTATGATTG
GAGTGACGGACTCTCAGAAGAAGGAGGTGATGATCACCGAGCGCAAGGAG
CGCCAGAGAGCCATGCGGCAAGAGCAGCGCTTCACGGCACGGGTCAACCG
GCAAGCCAACCACCAGAAACACTTCAGAATGGACGCCTCCGCCTCTTCTC
TCCCCTACACCTGCAACACTTGCCTTGTTGCTTTCCGCGGCAGCGATGCA
CAGCGGGGGCACATGCGCACCGACTGGCAGATCCTCTCCTGCAATGACTT
GTATAACATGAAGCGTCGGATTGCCTCTCTTCCCCCCGTGTCCCAGGAAA
CCTTCAACGAAAAGGTCCTCGTTGCCAAAGCCACCACCACTGCCGCGGCC
GCCAAGGCATCGTTCGAGACGACCTGTGTCGCTTGCCAGAAGACCTTCTA
CAGCGAGAACTCCTACCAGAACCATATCAAGAGCTCCAAGCACAAGGCTC
GCGAGGCCCGCATGAGCCGAGACAATGCCGACGAGTCGTCCTCCGTCATG
AGCTCCACTTTCTCCCTGGGAGAACCCATCAACAAGCCCCGCGTCGGAGA
GTCCGAGGTCAACAAGGTCGCCGAGACCCTCAAGGATGCTACCATCAAGG
AGGAGAGCAATGAAGACGAGGAGATGTCTGATGATGGATTCTTTGCGTCT
CGTTGTCTTTTCTGTCTGCAGAAGTCAGCCAATGTTGAAGAGAACACCGA
GCACATGTTCAAGACTCACGGCATGTTCATCCCCGAGAAGGACTACCTCG
TTGACCTTGAGGGTCTTCTCCGCTACCTGTGGCGCAAGATCAACGAAAAC
AGCGAATGTCTCTACTGCCATATGATCCGGAACACCCCCGAAGGCATCCG
CACCCACATGAAGGACAAGGGCCACTGCATGATCGCATTCGAGTCCGAGG
CCGAGCAGATCGAGATCGGCCAGTACTACGACTTCCGCAGCACCTACACA
GATGACGAAGAGTGGGAGTCCACCGGCAGCGAGACACATGAGGAAGGAGG
CGTCAAGGTTGACGGCGAAGACGAGGGATGGGAGACAGACGCCTCATCCA
TGGACGAGGATGAGGACGACCTCGACAACCGCAAGCGCGCGCCTGTCGTC
TACGCCACCGACTACGAGCTGCATCTTCCCTCCGGTCGCAGCGTCGGCCA
CCGCTCCCTCGCCAAATACTACCGCCAGAACCTGCACAACTACCCCACCG
CAGAGGAACGTGCCGAGCGCCAACTTGCCATCGAGAACGGCGAGATTGAG
GAAGAGGAGCCGAAGCCTCGTGGCCGCAACCTCAACCGTGCGCTTATCAC
CCGTGCCAATGGCGGTACTGGTATGATTGGAGTGACGGACTCTCAGAAGA
AGGAGGTGATGATCACCGAGCGCAAGGAGCGCCAGAGAGCCATGCGGCAA
GAGCAGCGCTTCACGGCACGGGTCAACCGGCAAGCCAACCACCAGAAACA
CTTCAGAATGGACGCCTCCGCCTCTTCTCTCCCCTACACCTGCAACACTT
GCCTTGTTGCTTTCCGCGGCAGCGATGCACAGCGGGGGCACATGCGCACC
GACTGGCAGATCCTCTCCTGCAATGACTTGTATAACATGAAGCGTCGGAT
TGCCTCTCTTCCCCCCGTGTCCCAGGAAACCTTCAACGAAAAGGTCCTCG
TTGCCAAAGCCACCACCACTGCCGCGGCCGCCAAGGCATCGTTCGAGACG
ACCTGTGTCGCTTGCCAGAAGACCTTCTACAGCGAGAACTCCTACCAGAA
CCATATCAAGAGCTCCAAGCACAAGGCTCGCGAGGCCCGCATGAGCCGAG
ACAATGCCGACGAGTCGTCCTCCGTCATGAGCTCCACTTTCTCCCTGGGA
GAACCCATCAACAAGCCCCGCGTCGGAGAGTCCGAGGTCAACAAGGTCGC
CGAGACCCTCAAGGATGCTACCATCAAGGAGGAGAGCAATGAAGACGAGG
AGATGTCTGATGATGGATTCTTTGCGTCTCGTTGTCTTTTCTGTCTGCAG
AAGTCAGCCAATGTTGAAGAGAACACCGAGCACATGTTCAAGACTCACGG
CATGTTCATCCCCGAGAAGGACTACCTCGTTGACCTTGAGGGTCTTCTCC
GCTACCTGTGGCGCAAGATCAACGAAAACAGCGAATGTCTCTACTGCCAT
ATGATCCGGAACACCCCCGAAGGCATCCGCACCCACATGAAGGACAAGGG
CCACTGCATGATCGCATTCGAGTCCGAGGCCGAGCAGATCGAGATCGGCC
AGTACTACGACTTCCGCAGCACCTACACAGATGACGAAGAGTGGGAGTCC
ACCGGCAGCGAGACACATGAGGAAGGAGGCGTCAAGGTTGACGGCGAAGA
CGAGGGATGGGAGACAGACGCCTCATCCATGGACGAGGATGAGGACGACC
TCGACAACCGCAAGCGCGCGCCTGTCGTCTACGCCACCGACTACGAGCTG
CATCTTCCCTCCGGTCGCAGCGTCGGCCACCGCTCCCTCGCCAAATACTA
CCGCCAGAACCTGCACAACTACCCCACCGCAGAGGAACGTGCCGAGCGCC
AACTTGCCATCGAGAACGGCGAGATTGAGGAAGAGGAGCCGAAGCCTCGT
GGCCGCAACCTCAACCGTGCGCTTATCACCCGTGCCAATGGCGGTACTGG
TATGATTGGAGTGACGGACTCTCAGAAGAAGGAGGTGATGATCACCGAGC
GCAAGGAGCGCCAGAGAGCCATGCGGCAAGAGCAGCGCTTCACGGCACGG
GTCAACCGGCAAGCCAACCACCAGAAACACTTCAGAATGGACGCCTCCGC
CTCTTCTCTCCCCTACACCTGCAACACTTGCCTTGTTGCTTTCCGCGGCA
GCGATGCACAGCGGGGGCACATGCGCACCGACTGGCA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002642KJC3_002642Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002642-T1KJC3_002642-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002642-T1.cdsKJC3_002642-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002642-T1.utr3p1KJC3_002642-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002642-T1.exon3KJC3_002642-T1.exon3Aspergillus niger KJC3exon
KJC3_002642-T1.exon2KJC3_002642-T1.exon2Aspergillus niger KJC3exon
KJC3_002642-T1.exon1KJC3_002642-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002642-T1.utr5p1KJC3_002642-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR022755
DBxrefInterPro:IPR041661
DBxrefInterPro:IPR013087
DBxrefInterPro:IPR003604
DBxrefPFAM:PF12874
DBxrefPFAM:PF12171
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:3150165..3152051 -
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