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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3298304..3300901- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002687-T1 ID=KJC3_002687-T1|Name=KJC3_002687-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2598bp|location=Sequence derived from alignment at ch2:3298304..3300901- (Aspergillus niger KJC3)
CGTGTCACTCTCCAAAATGTCTGCTCCTTCAATTGATCAACCTCTTCATC
CAGGCTCGCAGTAATGAGCCATGTTCGGCCTTTGTAAACTTCAAATAGCA
GTCTATGATTTCCCATTTGACCGGCCACTCGCACAAAGTTGGCCCATATA
ATAATGAATCATCCCGATCAGACAGCAGACGAAGCAGGCAACGTTCCGTC
CGCGCACTCCACTAACAAGCCCAAAGTGCGTCTGAGCTGTGAAACCTGTC
GGCAGCGCAAAGTCAAATGCGACAAGCTCAACCCATGCACGAACTGCCAG
CGTCTCGGAACGAGATGCGTTCCCGTTGAACGGGCACGTCTGCCACGCGG
CAGATCCGGCAGACCAGCAACGGAGCGACCAGGCGACCAGGATGCGAACC
TGAAGGACCGTGTTTCAAAGCTGGAAAGCATCATCCGTGAACTTGCTCGC
GGGGGCAGTCAGGCCTCCGCTCGGGCTATTCTAGCTGCTGCTGTCGATGA
AGGCTCACAGGCTGGCTCGTCGGATGGAGAGCATGGCGATGACGATGACT
CGCAGCCCGGTCGTGTTCGGACTCCTGATACGTATTTGGGGTCTTCGTTC
TGGGCTAGTCTCCTGAATGAGGTGAGCCCATGGCTAAACTTGACTACACG
TACCCAGTAATCTGATTTACTTAGTTAACTCCTGGACAGGTGCCGGATGT
ACATCCCAGTGAGCAAAGTGGTTCAAAGGAAGACCACCGTAATGCTGAGA
ACAGCAACCTAATCAACTACCGTCGACTTTTCTCCATGGCAAGTGGTAAT
GACTCTACAAACAGCAATTCTCCGGGCCCCTCGCCTGCCCATCAGCAGCT
ATGTTGTATATTCATGCACAGGGTAGACCCGCTCTGCAAGATCCTCCACA
GGCCCTCGGTGAAGGAATTCCTCGTGGATGGAAAGCCCTACCTGGACTAT
GAGCCAGGACATCTGGCCCCGACTGCTCTGGCATACGCCGTATACTTCGC
CGCCTCATGCAGTCTCCACGACGAAGAGAGCATGCGCTGCTTCGGCATCC
CCAAGTCATCCATGGTAGCAAAGTACCAAAAAGAAGCCGAAGCAGCACTC
GCCCGAGCAGACTTCATCACCACCAACGACCTCACCGTCCTACAAGCCTA
CGTCCTCTTCCTCGTACGTTGTTTCTCCCGCGCCATTCACACCCATACCA
CTAACCCTTCCATTCCAGCTCGCCCTCCGCTCCCAAGACCAAAGCCGCCG
CATGTGGACAATGCTCAGCATGGCCCTACGCATCGCGCAAGCTCTCTCCC
TCCACATCCCCGACCCTCCATTTCACGTAACCCCCTTCGAGCGCGAACTA
CGGCGCCGTGTCTGGCTTGCCATCGGCTTCCTCGACGTCCAAGCATCAAT
GGACCGCGCCTCCGAGCCAATGATGCAAGCCGCCTGGCTAGAATCCCACC
CGCCAGCAAACGTAAACGACATTGACATAAGCCCAACCATGACCTCAAAT
CCACCCGACTCCCCGGGCTTCACAGACATGACCTTCACAATGATGGTTCG
TAAAGCTCAATACGTAACCCGATCGCTCAACTTCTCCGACTTCATGGAAC
CCTCCATCAACACGCTCGCCATCCGCCAACAACTCGTCCTCGAATTCCAA
CACTCCGTCTCCAAACTCCTCGCCCACGCCTCCCCCACTACAAATTCCCT
GCATTGGCTCACAACAGCCGTAGCAGAATGCACTCACGCCTCAATGCAAC
TCATCACCCTGCGACCCCTCCAACGCGCCCCAAACTTCACTCCGCCCCTC
GTCCGTGGCGACCGTCTCCTCGAATTCGCCGTCAACGTGCTCACCACCTC
GCATCGTCTCCGCTCAGATCCCCGTTTCACTACCTACAAATGGATCGAAT
TCGCCTTCCCACCATGGCATAGTCTGGCTGTTGCGCTGGCGGAACTCTGC
GTCTGCGACGACAAAGCCGTCATGGAACGCTTCTGGGATCCGGTCGAGTA
TACCTTCCAACATCTGGGAAGAATAATTGCTGATTCGCAACGGGGGATGC
TGTGGAAACCTATGGTGAAGCTGATGGATAGGGCGAAGGATAGGCGGAGG
GAGCTGCTTTCCACATCTACTACTATTTCTTCCGGCACTGGCTCTGGTCC
TTCTTCATCCAACCTCAATCCTGGTTCGGCTATCAGCTCAGAGCAGTTTT
CTCCACTGGATTTATCTATCCAGCAACAGCAGAAGGAGCAGGAGCAGCAA
CCGTCTATGGCTATGCAGATAGACACGCAAAACTTCATGCACACACCTGA
GAACAGTAGTCTTGATGGTGCGGCAGCGGCAGCGGCAGTCGCTGCGTCTG
CGTGGCCGAATGTCTGGGACGCGGTGGATTTCAGCTACACGGGTCCAGGA
CTAGGAAGTATGCAGATGGCGTGGGCGAATTACGAGAACTTTGTTGCGGA
TTTCTATGTGAATGTTGATGATCCGGAGATTAACCGGTGAATGTTGATCT
GAATCACCCACCCTATCTTCCTTTCTATCGATCTATCTAAGCCGGAGGAT
AGATATACGAAGGGAGTACAACTACGTGGGAACATATAATGATGAGGG back to topCoding sequence (CDS) from alignment at ch2:3298304..3300901- >KJC3_002687-T1 ID=KJC3_002687-T1|Name=KJC3_002687-T1|organism=Aspergillus niger KJC3|type=CDS|length=6687bp|location=Sequence derived from alignment at ch2:3298304..3300901- (Aspergillus niger KJC3)
CTCGCCCTCCGCTCCCAAGACCAAAGCCGCCGCATGTGGACAATGCTCAG
CATGGCCCTACGCATCGCGCAAGCTCTCTCCCTCCACATCCCCGACCCTC
CATTTCACGTAACCCCCTTCGAGCGCGAACTACGGCGCCGTGTCTGGCTT
GCCATCGGCTTCCTCGACGTCCAAGCATCAATGGACCGCGCCTCCGAGCC
AATGATGCAAGCCGCCTGGCTAGAATCCCACCCGCCAGCAAACGTAAACG
ACATTGACATAAGCCCAACCATGACCTCAAATCCACCCGACTCCCCGGGC
TTCACAGACATGACCTTCACAATGATGGTTCGTAAAGCTCAATACGTAAC
CCGATCGCTCAACTTCTCCGACTTCATGGAACCCTCCATCAACACGCTCG
CCATCCGCCAACAACTCGTCCTCGAATTCCAACACTCCGTCTCCAAACTC
CTCGCCCACGCCTCCCCCACTACAAATTCCCTGCATTGGCTCACAACAGC
CGTAGCAGAATGCACTCACGCCTCAATGCAACTCATCACCCTGCGACCCC
TCCAACGCGCCCCAAACTTCACTCCGCCCCTCGTCCGTGGCGACCGTCTC
CTCGAATTCGCCGTCAACGTGCTCACCACCTCGCATCGTCTCCGCTCAGA
TCCCCGTTTCACTACCTACAAATGGATCGAATTCGCCTTCCCACCATGGC
ATAGTCTGGCTGTTGCGCTGGCGGAACTCTGCGTCTGCGACGACAAAGCC
GTCATGGAACGCTTCTGGGATCCGGTCGAGTATACCTTCCAACATCTGGG
AAGAATAATTGCTGATTCGCAACGGGGGATGCTGTGGAAACCTATGGTGA
AGCTGATGGATAGGGCGAAGGATAGGCGGAGGGAGCTGCTTTCCACATCT
ACTACTATTTCTTCCGGCACTGGCTCTGGTCCTTCTTCATCCAACCTCAA
TCCTGGTTCGGCTATCAGCTCAGAGCAGTTTTCTCCACTGGATTTATCTA
TCCAGCAACAGCAGAAGGAGCAGGAGCAGCAACCGTCTATGGCTATGCAG
ATAGACACGCAAAACTTCATGCACACACCTGAGAACAGTAGTCTTGATGG
TGCGGCAGCGGCAGCGGCAGTCGCTGCGTCTGCGTGGCCGAATGTCTGGG
ACGCGGTGGATTTCAGCTACACGGGTCCAGGACTAGGAAGTATGCAGATG
GCGTGGGCGAATTACGAGAACTTTGTTGCGGATTTCTATGTGAATGTTGA
TGATCCGGAGATTAACCGGTGATTAACTCCTGGACAGGTGCCGGATGTAC
ATCCCAGTGAGCAAAGTGGTTCAAAGGAAGACCACCGTAATGCTGAGAAC
AGCAACCTAATCAACTACCGTCGACTTTTCTCCATGGCAAGTGGTAATGA
CTCTACAAACAGCAATTCTCCGGGCCCCTCGCCTGCCCATCAGCAGCTAT
GTTGTATATTCATGCACAGGGTAGACCCGCTCTGCAAGATCCTCCACAGG
CCCTCGGTGAAGGAATTCCTCGTGGATGGAAAGCCCTACCTGGACTATGA
GCCAGGACATCTGGCCCCGACTGCTCTGGCATACGCCGTATACTTCGCCG
CCTCATGCAGTCTCCACGACGAAGAGAGCATGCGCTGCTTCGGCATCCCC
AAGTCATCCATGGTAGCAAAGTACCAAAAAGAAGCCGAAGCAGCACTCGC
CCGAGCAGACTTCATCACCACCAACGACCTCACCGTCCTACAAGCCTACG
TCCTCTTCCTCATGAATCATCCCGATCAGACAGCAGACGAAGCAGGCAAC
GTTCCGTCCGCGCACTCCACTAACAAGCCCAAAGTGCGTCTGAGCTGTGA
AACCTGTCGGCAGCGCAAAGTCAAATGCGACAAGCTCAACCCATGCACGA
ACTGCCAGCGTCTCGGAACGAGATGCGTTCCCGTTGAACGGGCACGTCTG
CCACGCGGCAGATCCGGCAGACCAGCAACGGAGCGACCAGGCGACCAGGA
TGCGAACCTGAAGGACCGTGTTTCAAAGCTGGAAAGCATCATCCGTGAAC
TTGCTCGCGGGGGCAGTCAGGCCTCCGCTCGGGCTATTCTAGCTGCTGCT
GTCGATGAAGGCTCACAGGCTGGCTCGTCGGATGGAGAGCATGGCGATGA
CGATGACTCGCAGCCCGGTCGTGTTCGGACTCCTGATACGTATTTGGGGT
CTTCGTTCTGGGCTAGTCTCCTGAATGAGCTCGCCCTCCGCTCCCAAGAC
CAAAGCCGCCGCATGTGGACAATGCTCAGCATGGCCCTACGCATCGCGCA
AGCTCTCTCCCTCCACATCCCCGACCCTCCATTTCACGTAACCCCCTTCG
AGCGCGAACTACGGCGCCGTGTCTGGCTTGCCATCGGCTTCCTCGACGTC
CAAGCATCAATGGACCGCGCCTCCGAGCCAATGATGCAAGCCGCCTGGCT
AGAATCCCACCCGCCAGCAAACGTAAACGACATTGACATAAGCCCAACCA
TGACCTCAAATCCACCCGACTCCCCGGGCTTCACAGACATGACCTTCACA
ATGATGGTTCGTAAAGCTCAATACGTAACCCGATCGCTCAACTTCTCCGA
CTTCATGGAACCCTCCATCAACACGCTCGCCATCCGCCAACAACTCGTCC
TCGAATTCCAACACTCCGTCTCCAAACTCCTCGCCCACGCCTCCCCCACT
ACAAATTCCCTGCATTGGCTCACAACAGCCGTAGCAGAATGCACTCACGC
CTCAATGCAACTCATCACCCTGCGACCCCTCCAACGCGCCCCAAACTTCA
CTCCGCCCCTCGTCCGTGGCGACCGTCTCCTCGAATTCGCCGTCAACGTG
CTCACCACCTCGCATCGTCTCCGCTCAGATCCCCGTTTCACTACCTACAA
ATGGATCGAATTCGCCTTCCCACCATGGCATAGTCTGGCTGTTGCGCTGG
CGGAACTCTGCGTCTGCGACGACAAAGCCGTCATGGAACGCTTCTGGGAT
CCGGTCGAGTATACCTTCCAACATCTGGGAAGAATAATTGCTGATTCGCA
ACGGGGGATGCTGTGGAAACCTATGGTGAAGCTGATGGATAGGGCGAAGG
ATAGGCGGAGGGAGCTGCTTTCCACATCTACTACTATTTCTTCCGGCACT
GGCTCTGGTCCTTCTTCATCCAACCTCAATCCTGGTTCGGCTATCAGCTC
AGAGCAGTTTTCTCCACTGGATTTATCTATCCAGCAACAGCAGAAGGAGC
AGGAGCAGCAACCGTCTATGGCTATGCAGATAGACACGCAAAACTTCATG
CACACACCTGAGAACAGTAGTCTTGATGGTGCGGCAGCGGCAGCGGCAGT
CGCTGCGTCTGCGTGGCCGAATGTCTGGGACGCGGTGGATTTCAGCTACA
CGGGTCCAGGACTAGGAAGTATGCAGATGGCGTGGGCGAATTACGAGAAC
TTTGTTGCGGATTTCTATGTGAATGTTGATGATCCGGAGATTAACCGGTG
ATTAACTCCTGGACAGGTGCCGGATGTACATCCCAGTGAGCAAAGTGGTT
CAAAGGAAGACCACCGTAATGCTGAGAACAGCAACCTAATCAACTACCGT
CGACTTTTCTCCATGGCAAGTGGTAATGACTCTACAAACAGCAATTCTCC
GGGCCCCTCGCCTGCCCATCAGCAGCTATGTTGTATATTCATGCACAGGG
TAGACCCGCTCTGCAAGATCCTCCACAGGCCCTCGGTGAAGGAATTCCTC
GTGGATGGAAAGCCCTACCTGGACTATGAGCCAGGACATCTGGCCCCGAC
TGCTCTGGCATACGCCGTATACTTCGCCGCCTCATGCAGTCTCCACGACG
AAGAGAGCATGCGCTGCTTCGGCATCCCCAAGTCATCCATGGTAGCAAAG
TACCAAAAAGAAGCCGAAGCAGCACTCGCCCGAGCAGACTTCATCACCAC
CAACGACCTCACCGTCCTACAAGCCTACGTCCTCTTCCTCATGAATCATC
CCGATCAGACAGCAGACGAAGCAGGCAACGTTCCGTCCGCGCACTCCACT
AACAAGCCCAAAGTGCGTCTGAGCTGTGAAACCTGTCGGCAGCGCAAAGT
CAAATGCGACAAGCTCAACCCATGCACGAACTGCCAGCGTCTCGGAACGA
GATGCGTTCCCGTTGAACGGGCACGTCTGCCACGCGGCAGATCCGGCAGA
CCAGCAACGGAGCGACCAGGCGACCAGGATGCGAACCTGAAGGACCGTGT
TTCAAAGCTGGAAAGCATCATCCGTGAACTTGCTCGCGGGGGCAGTCAGG
CCTCCGCTCGGGCTATTCTAGCTGCTGCTGTCGATGAAGGCTCACAGGCT
GGCTCGTCGGATGGAGAGCATGGCGATGACGATGACTCGCAGCCCGGTCG
TGTTCGGACTCCTGATACGTATTTGGGGTCTTCGTTCTGGGCTAGTCTCC
TGAATGAGCTCGCCCTCCGCTCCCAAGACCAAAGCCGCCGCATGTGGACA
ATGCTCAGCATGGCCCTACGCATCGCGCAAGCTCTCTCCCTCCACATCCC
CGACCCTCCATTTCACGTAACCCCCTTCGAGCGCGAACTACGGCGCCGTG
TCTGGCTTGCCATCGGCTTCCTCGACGTCCAAGCATCAATGGACCGCGCC
TCCGAGCCAATGATGCAAGCCGCCTGGCTAGAATCCCACCCGCCAGCAAA
CGTAAACGACATTGACATAAGCCCAACCATGACCTCAAATCCACCCGACT
CCCCGGGCTTCACAGACATGACCTTCACAATGATGGTTCGTAAAGCTCAA
TACGTAACCCGATCGCTCAACTTCTCCGACTTCATGGAACCCTCCATCAA
CACGCTCGCCATCCGCCAACAACTCGTCCTCGAATTCCAACACTCCGTCT
CCAAACTCCTCGCCCACGCCTCCCCCACTACAAATTCCCTGCATTGGCTC
ACAACAGCCGTAGCAGAATGCACTCACGCCTCAATGCAACTCATCACCCT
GCGACCCCTCCAACGCGCCCCAAACTTCACTCCGCCCCTCGTCCGTGGCG
ACCGTCTCCTCGAATTCGCCGTCAACGTGCTCACCACCTCGCATCGTCTC
CGCTCAGATCCCCGTTTCACTACCTACAAATGGATCGAATTCGCCTTCCC
ACCATGGCATAGTCTGGCTGTTGCGCTGGCGGAACTCTGCGTCTGCGACG
ACAAAGCCGTCATGGAACGCTTCTGGGATCCGGTCGAGTATACCTTCCAA
CATCTGGGAAGAATAATTGCTGATTCGCAACGGGGGATGCTGTGGAAACC
TATGGTGAAGCTGATGGATAGGGCGAAGGATAGGCGGAGGGAGCTGCTTT
CCACATCTACTACTATTTCTTCCGGCACTGGCTCTGGTCCTTCTTCATCC
AACCTCAATCCTGGTTCGGCTATCAGCTCAGAGCAGTTTTCTCCACTGGA
TTTATCTATCCAGCAACAGCAGAAGGAGCAGGAGCAGCAACCGTCTATGG
CTATGCAGATAGACACGCAAAACTTCATGCACACACCTGAGAACAGTAGT
CTTGATGGTGCGGCAGCGGCAGCGGCAGTCGCTGCGTCTGCGTGGCCGAA
TGTCTGGGACGCGGTGGATTTCAGCTACACGGGTCCAGGACTAGGAAGTA
TGCAGATGGCGTGGGCGAATTACGAGAACTTTGTTGCGGATTTCTATGTG
AATGTTGATGATCCGGAGATTAACCGGTGATTAACTCCTGGACAGGTGCC
GGATGTACATCCCAGTGAGCAAAGTGGTTCAAAGGAAGACCACCGTAATG
CTGAGAACAGCAACCTAATCAACTACCGTCGACTTTTCTCCATGGCAAGT
GGTAATGACTCTACAAACAGCAATTCTCCGGGCCCCTCGCCTGCCCATCA
GCAGCTATGTTGTATATTCATGCACAGGGTAGACCCGCTCTGCAAGATCC
TCCACAGGCCCTCGGTGAAGGAATTCCTCGTGGATGGAAAGCCCTACCTG
GACTATGAGCCAGGACATCTGGCCCCGACTGCTCTGGCATACGCCGTATA
CTTCGCCGCCTCATGCAGTCTCCACGACGAAGAGAGCATGCGCTGCTTCG
GCATCCCCAAGTCATCCATGGTAGCAAAGTACCAAAAAGAAGCCGAAGCA
GCACTCGCCCGAGCAGACTTCATCACCACCAACGACCTCACCGTCCTACA
AGCCTACGTCCTCTTCCTCATGAATCATCCCGATCAGACAGCAGACGAAG
CAGGCAACGTTCCGTCCGCGCACTCCACTAACAAGCCCAAAGTGCGTCTG
AGCTGTGAAACCTGTCGGCAGCGCAAAGTCAAATGCGACAAGCTCAACCC
ATGCACGAACTGCCAGCGTCTCGGAACGAGATGCGTTCCCGTTGAACGGG
CACGTCTGCCACGCGGCAGATCCGGCAGACCAGCAACGGAGCGACCAGGC
GACCAGGATGCGAACCTGAAGGACCGTGTTTCAAAGCTGGAAAGCATCAT
CCGTGAACTTGCTCGCGGGGGCAGTCAGGCCTCCGCTCGGGCTATTCTAG
CTGCTGCTGTCGATGAAGGCTCACAGGCTGGCTCGTCGGATGGAGAGCAT
GGCGATGACGATGACTCGCAGCCCGGTCGTGTTCGGACTCCTGATACGTA
TTTGGGGTCTTCGTTCTGGGCTAGTCTCCTGAATGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002687-T1.utr3p1 | KJC3_002687-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002687-T1.utr5p1 | KJC3_002687-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3298304..3300901 - |
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