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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3403617..3407712+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002727-T1 ID=KJC3_002727-T1|Name=KJC3_002727-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4096bp|location=Sequence derived from alignment at ch2:3403617..3407712+ (Aspergillus niger KJC3)
CTTCCCCCCAATTCTCCACCGACCCGTCCGTTAACTATCTTGCCTTTTCC
TCTTTTCTTCGTCCGCTCCACCAGCCAGACTAAGGTTCTCCTCCCCCATA
TTCCCCTTCGATTTTTTCCCTTCCTTCTTTCCTCCTTCACTCATTCCTCT
CGCCCATCACCCTCAATCCTCACCCCCACGACCATCTCCGACCTCCCTGA
ACCGGACATATCTACATACTTCGCGCCAGGACGCCTGAACCTTCGTTCAA
ATTTCACCCACCCCGACCGTTTGTCGTTTTCGGTCGTGTCTCTCTTGGAT
AGGTAGTACTGGAAGTGTGAAGGATCCGCTTACGGAACCGGCTTCGATCA
ATCGACCTACCCCGGATCGATCTCTGTTGCGCCATACCACACTCCATCTC
GCACAGCAATTGTTGAACTCGACACTTGCTGCACTTGACGGGCAGCTTGG
GCGCCACTTTCAATTCAATCGACTTTCTGCAGCACGCTGCAGAACCCAAA
TTTGGAGGCGTTACTCTCAGTAACCTTGGAGGATCGAAGAGGTCTATCTC
GCAATTTCTCGCGCCGAACGACCACGCTTGGGGGAGACGGCGACCCCGAA
ACTACACTCCTACGGGGAAGAAAAGAATCGTTTGAGGAACTTCAGCATCT
TCGGAATTGTGGCGTCGTTAGAATGGCTTCGCGTTTTTCAACCCCCGTTC
TGACGGTGGATACGGCCAAGATCCATAAGGTCGATACAGCCAATGCGCAA
AGCCTGCATGGCATGTGGATGGGTAAGTGCATCGTGTACCGTTGCAGGTA
TCAGTCGCGTCTGGTGGCTGACAATTGATCTCGGAATTTAGTCTTCTCGA
AATGTGCCGACTATATGGAGGAAGGCCGGCGTCTGGAAAACCTGAGCTGG
CGACTCTGGACACGTGAGACCTTCTGTGTGGAGCCGGAGACCTCCAGCAC
TACCTCGGTTTTGCCACTCCTTCGTTCCGAAGCTGGAGATTTGCCAGAAC
TTTCTGCGAGTGTTGAATCGGCGGCATCCGAGCAGGCAGAGCGGATAGAA
CATCACATTAAACGCCCGAAGTGCTTGGACTACAAGCCGGCGGTGGTGCG
TGAGGATTCGATGGCCAGCCTTGCCCGCGGAAAGGAGAAGCATATTACAT
CTCTAGGTTTGGAGCGGATGGTGCTTAACATCAAAGAGAAGAAAAACCTT
GAACCCATCTCTACCGTCATGTCGACAGTCGAGCCCCCTGTCGTCGATAT
TACACCGCGCCCGTCGACACCTACTCCCGCCACCCCTCCTTCTGTCTCTA
CGGCGAGGCGGACGCCAACCCCGCCCCCGTACCCTCTGAGCCAACAACCA
AACCAGTCTACTGAGTCTTGCTCGACTACTGCGCCCGAAGGCAATGACAG
CGATAACAATGGCAATGCTGCCGGGTCTGACACTAGTGTTTCTTCGTCCG
GCATCCTTACCCGTTCCGAATTGATCAAGTCGCCAAGCATCGTCCGCGGA
TTCTCTCCCTCTGTCATCTCCTCGTCATACCGGTCGCAACCTAGATTGGC
TGCCGAACCTGGCCCGGCCAAGCCTCCAGCACAGCTTAAGCCCACTCCCT
TCAAGAAGAAGGGCGGCATGTTCACTCTTGGAGGCTCGTCGGGTGATGAC
GATGAAAGCAGCTTCGAGGATCGCATGGCACTGCAAGGGCCGCATCGCAG
TTCTCTTTCTGATGAACTGAGTAAGCCTTCGGCAAATGGCCAGGATCTCA
GGAAAAAGGTGGCTTCATTCAGGGACCAGAACGAAATTATCAAGCCTATC
CGGGAACGTGCTATGGATAATGAGGATGCCGTCGAGACTGACGACGAAGT
TTCTGAGAGTGCTATTGAGGACTCGGACTCTGACTGGGAAGACTCGATTA
CAGAGAGTGGCCGATCCAGTGTTGAGGAGAAGGAACTCTTCCAACGTGTG
GATTCCCGGCCCAACCTTGTTTCGCGTCGCTCCCTTCTCACCATGATGAT
GCATCAGCCTACTAAGATGGGCGCTCCGACCCGGTCTAGTCCAGCCCTAC
AACGCTCGCGTCTTACTTCACCTAATGGTCCTTCGATCCCTGCATCACCG
CCTGAGGACGATGACGAGAACTTGACGATGCGCGGTCCCGACGTCCCTCG
CTCAAAGCCGATCATCATGAAGCCCACCCCGCAGTCTGTTGCTCACTCCC
CACGGACAACTCGCCGCAACATGCTTGCTACCGAACTGACCGAGTCTCTC
CGCCGACACTTGCTGTGGGAACGTCAACAGAAGAGTGCGACTGCCAACGC
ATTCCTCAAGCGCAGACATACGGCGCATGATATGGCCAATCTACAAGAAT
ACCCTGGACCGAAGGGGTCTAAGGGACAGCCAGCCGGCCAGGCCGGTGGC
GCTGCAACCAAGGCTACCAGTCAGGGTAAGGACAAGACCGGATCCTTTAC
TCACTACACCGACTTTGGACCTTGGGAATACCATGTGAAGGGGTGGTGAA
GCCCTTGACAGATTCATCGACACGTCTTCGCCTTTCATTATCTGTGTCAA
AGCATATCCTTTCTTCTGGATCGGTAATGTTTGTTGACTATGATACCCGA
TACTCGAACGGCTACTTCCTTGTTTCCTCGATTCTTTTCTTTTCCAAAAC
ATGTAAAGACCGCCGACTGATTATCATCCTTGTGACACGTACCATCACGA
CTGCATTGCATATTGGCGCACCTAGGGATCATACGGCTGTTATATCCGAC
CTAATGCGTTTCGGGTCATTGTTTTGCTTTTTTTCCTTTTTTCTTTTCCT
TTCATCTTACCCCATCTTTCAACATTGCATTGTGAGGCTGTCTGCTGTCA
TTATATATGGGCCACCGGAGGGACAACGCCTTTTATTACATCCTTAATTT
CACATGTACAGATGAAACTTCCTCTTTGGCGATGCATGGTCGGATACGGT
CTTCATTGTCTCTTTTTTTTCTTTTCCTTTTTTTCACTTCTTACTATGGG
TGGACATACTGAAAAGAAAAGAGGGTTTTATTCTTTCTTATTATGGATGT
GATTGCGTCAGGGAGTGAGGCAGCCTGCGTTTGATTATTTTGAAGCGGCA
GAAAAACATTGCAAACATGCATCTTGGGAACAGCCAGTTTAGCTCTTCTT
GATACCAGATACCACTACTTGTTCGTGACTTTACTACCTCCCGCTGCCTG
TCTTTGCGCATGTTATCATCCATGTATGCTACTGTGAGATTGCTATTTGT
GTTTTAAATTCCTCCCAAACCAAAAGAAATCCAGCGAAATAGAAATCCAC
ATTGGATATGATATGAGCTACATCTTCCTTGATTTCAGCAGTAAAAGTCT
AAGAAAGAAACCTAAATAGAGAGAGAGAGAGAGAAAGTGGTGTGGTGTGG
TGTGGTGACGCGACTCTACACCGAAGCCCATCCATCCATGGGCCGCTGGC
CGCCGTGGGCCTGGGCTAAGGCGCACTGACACGTAGCAAGAGAAAATAAT
AATAACAACAACAATAATAATAATAGTAGTAGCAAAAATGAATAGGAGGG
TAGGGGAAGAGTGAGGGGAACTCCCCAACCTTCGAACCACAGGCCGTACC
TGTTGAGATCTAGAATCTCGCACTGATCCCCTGGTTCCCTCCCCTTCACA
TGCGCCCGATATTAAGATCCCTCCATTAGACAATTTCGATCGGGAGGGAA
GGAAAAACACAAAGAAAAAAGTAAAATAAAATAAGAACTTAATTCTAAAA
TTGGAAATGAGGGAGGCGAGAAAGTAACTGGAAAGAGAAGCTATGGGTGT
ACGTATGTATTTGTTCGGTATGTTTTGTGAACATCTACTAGTTATCGAGT
TACTACTAACCACTTAAGTTGAGTTCGATGTGATCACGAAACTCTTCTTC
CATGGAGCATGATGGAAGGCAAGGAAGGGCATCTCGGGGTTCCCGTCCCT
CCCCCCACCTACCTACATACATACTGAACCTAACCCCCCCCCCCCGCCGT
CCTTGTCATACCCAACCAACAACAATCGATGACAGTTTGCTCTTGGAGGG
GAACAGGGGGGTGGAGGGGGAAAGGTGGAGGGGGGAAGGTATGACG back to topCoding sequence (CDS) from alignment at ch2:3403617..3407712+ >KJC3_002727-T1 ID=KJC3_002727-T1|Name=KJC3_002727-T1|organism=Aspergillus niger KJC3|type=CDS|length=1635bp|location=Sequence derived from alignment at ch2:3403617..3407712+ (Aspergillus niger KJC3)
ATGGAGGAAGGCCGGCGTCTGGAAAACCTGAGCTGGCGACTCTGGACACG
TGAGACCTTCTGTGTGGAGCCGGAGACCTCCAGCACTACCTCGGTTTTGC
CACTCCTTCGTTCCGAAGCTGGAGATTTGCCAGAACTTTCTGCGAGTGTT
GAATCGGCGGCATCCGAGCAGGCAGAGCGGATAGAACATCACATTAAACG
CCCGAAGTGCTTGGACTACAAGCCGGCGGTGGTGCGTGAGGATTCGATGG
CCAGCCTTGCCCGCGGAAAGGAGAAGCATATTACATCTCTAGGTTTGGAG
CGGATGGTGCTTAACATCAAAGAGAAGAAAAACCTTGAACCCATCTCTAC
CGTCATGTCGACAGTCGAGCCCCCTGTCGTCGATATTACACCGCGCCCGT
CGACACCTACTCCCGCCACCCCTCCTTCTGTCTCTACGGCGAGGCGGACG
CCAACCCCGCCCCCGTACCCTCTGAGCCAACAACCAAACCAGTCTACTGA
GTCTTGCTCGACTACTGCGCCCGAAGGCAATGACAGCGATAACAATGGCA
ATGCTGCCGGGTCTGACACTAGTGTTTCTTCGTCCGGCATCCTTACCCGT
TCCGAATTGATCAAGTCGCCAAGCATCGTCCGCGGATTCTCTCCCTCTGT
CATCTCCTCGTCATACCGGTCGCAACCTAGATTGGCTGCCGAACCTGGCC
CGGCCAAGCCTCCAGCACAGCTTAAGCCCACTCCCTTCAAGAAGAAGGGC
GGCATGTTCACTCTTGGAGGCTCGTCGGGTGATGACGATGAAAGCAGCTT
CGAGGATCGCATGGCACTGCAAGGGCCGCATCGCAGTTCTCTTTCTGATG
AACTGAGTAAGCCTTCGGCAAATGGCCAGGATCTCAGGAAAAAGGTGGCT
TCATTCAGGGACCAGAACGAAATTATCAAGCCTATCCGGGAACGTGCTAT
GGATAATGAGGATGCCGTCGAGACTGACGACGAAGTTTCTGAGAGTGCTA
TTGAGGACTCGGACTCTGACTGGGAAGACTCGATTACAGAGAGTGGCCGA
TCCAGTGTTGAGGAGAAGGAACTCTTCCAACGTGTGGATTCCCGGCCCAA
CCTTGTTTCGCGTCGCTCCCTTCTCACCATGATGATGCATCAGCCTACTA
AGATGGGCGCTCCGACCCGGTCTAGTCCAGCCCTACAACGCTCGCGTCTT
ACTTCACCTAATGGTCCTTCGATCCCTGCATCACCGCCTGAGGACGATGA
CGAGAACTTGACGATGCGCGGTCCCGACGTCCCTCGCTCAAAGCCGATCA
TCATGAAGCCCACCCCGCAGTCTGTTGCTCACTCCCCACGGACAACTCGC
CGCAACATGCTTGCTACCGAACTGACCGAGTCTCTCCGCCGACACTTGCT
GTGGGAACGTCAACAGAAGAGTGCGACTGCCAACGCATTCCTCAAGCGCA
GACATACGGCGCATGATATGGCCAATCTACAAGAATACCCTGGACCGAAG
GGGTCTAAGGGACAGCCAGCCGGCCAGGCCGGTGGCGCTGCAACCAAGGC
TACCAGTCAGGGTAAGGACAAGACCGGATCCTTTACTCACTACACCGACT
TTGGACCTTGGGAATACCATGTGAAGGGGTGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002727-T1.utr5p1 | KJC3_002727-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021711 |
| DBxref | InterPro:IPR013860 |
| DBxref | PFAM:PF11702 |
| DBxref | PFAM:PF08550 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3403617..3407712 + |
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