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KJC3_002748-T1, KJC3_002748-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_002748-T1
Unique NameKJC3_002748-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch2:3456682..3458396-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_002748-T1 ID=KJC3_002748-T1|Name=KJC3_002748-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1715bp|location=Sequence derived from alignment at ch2:3456682..3458396- (Aspergillus niger KJC3)
CTGGGCCACCAGACTTGCCCAACCCGAACCTTCCAACAGCACACGGTTCG
CCATTACTTGATACACGACCCATCTGACCACCAGCACCGCTGTCGCTTCT
TCACACTCTACAGCAAGGAATTGTTAGATATTCCACCACCGCTTCCCCTC
CTCTCTACTCACCTGTCTCTGTACTAGTACAAGGAAAGATCTAGAAAGGC
TCGTCACTAGGCCTTTTTTCATCAAGATTCGGAACCTTTTTCAGGCGTGA
CGTCTGGCGTATGACTGCTGCGTCAGTCAAACCCTGAAGGTACGTGTCTG
CTGCTAGTTTGCACACGGCGCATCACATCATCCACCACCTCTCTCTATAC
TATATATCGGACTCTCCGTTCATCATGTCCTTTCCGCCACCTCCAGGTCT
CAGACAAGCCCCGTCGTCTCTTCCTCCCCGGCCACCGGCAACAGCAAGCG
GTGCCTCACCATCTACCTTTCAACCTGCATATTCGGCGGCACCGTCTGGT
GCAAGCAGCAGCTATGGCGGAAACGGGTCTCGGCCGGGCTACAGCGCCAT
CACAGCATTCCAGCCTCGCTCGGTAGCTTCTAGCCAACCTTACCGTACCA
GCAGCCCCGTCGTGTCCGCTCCGCCAACTACATCTAGTGGATATTCGACA
CCGACCACGGGCAGTTACGGTGGCTACTACCCTCAGGCGCAAGCGTCATA
CCAAAGCGGTCCTTCTTACTACGGAGCCGCCCAATACAATGAAAACACAT
ACGGTCCGTCTGTACCTCGGATTCAAAACCCCTTCACGCCCGCAGGGGGG
GATCAGTCAGGCGCCTATGGCATGCGGGGGAGGAACTTTGGCCGGAATGA
ATCGGGGCTGGACCCTGAAACGGAAGCCCAGATTGCACAGTGGCAGAGTG
CCTACGTAAACAAGGAAGAGATGCCCGTAGCCGGCAAGGTTCCTGGTCGC
CCGGGTGTTAACCCGGGTGTTACTGGTCCCACTTCTGGTGCAAATACCCC
ATCCGGTTCCAATACAGCGGCTAACACGCCAGCACCCACCGTGGGTAACC
CGGAGCCTGCGCCGAAGACTGTGGTTCGTGCCGGAGGTGGTCAGACCTGG
TCCGATTCGACCCTACTCGAGTGGGATCCCGCACATTTTCGCTTGTTTGT
AGGCAATCTGGCTGGTGAGGTCACGGACGATTCGCTACTCAAGGCATTCT
CCAAGTACACCTCCGTTCAAAAGGCTCGAGTAATCCGTGACAAACGTACC
CAGAAGAGTAAAGGCTACGGATTCGTCAGTTTCAGCGACGGCGACGATTA
TTTCAAGGCTGCGAGAGAAATGCAGGGCAAGTACATTGGCTCGCATCCGG
TTCTGCTCCGACGAGCCACCACAGAGGTCCGTCCCGTGTCCAATACGAAG
AATGGAAAGAAGCATGGTGGTGGAGGCGGTTCGGGTGGTGGTTCCGGCAG
TGGTAAAGTCAAGCACGATGGAGTCAAAAAGCACGGAAAGACCAAGGGAG
GACTCAAGATTATTGGATGAAGGGAGGCATGCTGTATGTCCTCGAAGATA
AATATTTTGACAATCGGATAAATATAATGCATAAAGTTACGTCTACAGTG
ATAGAATTAACGGGGAGCAGCGGGATACCGACGCCTTGAGTTATCATTCG
CATCCTTCCAAGGTCGTCATACAGCAGTCACATATCGGTTACAGAAGTTA
CTGCGCAATTAAACA
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Coding sequence (CDS) from alignment at ch2:3456682..3458396-

>KJC3_002748-T1 ID=KJC3_002748-T1|Name=KJC3_002748-T1|organism=Aspergillus niger KJC3|type=CDS|length=1146bp|location=Sequence derived from alignment at ch2:3456682..3458396- (Aspergillus niger KJC3)
ATGTCCTTTCCGCCACCTCCAGGTCTCAGACAAGCCCCGTCGTCTCTTCC
TCCCCGGCCACCGGCAACAGCAAGCGGTGCCTCACCATCTACCTTTCAAC
CTGCATATTCGGCGGCACCGTCTGGTGCAAGCAGCAGCTATGGCGGAAAC
GGGTCTCGGCCGGGCTACAGCGCCATCACAGCATTCCAGCCTCGCTCGGT
AGCTTCTAGCCAACCTTACCGTACCAGCAGCCCCGTCGTGTCCGCTCCGC
CAACTACATCTAGTGGATATTCGACACCGACCACGGGCAGTTACGGTGGC
TACTACCCTCAGGCGCAAGCGTCATACCAAAGCGGTCCTTCTTACTACGG
AGCCGCCCAATACAATGAAAACACATACGGTCCGTCTGTACCTCGGATTC
AAAACCCCTTCACGCCCGCAGGGGGGGATCAGTCAGGCGCCTATGGCATG
CGGGGGAGGAACTTTGGCCGGAATGAATCGGGGCTGGACCCTGAAACGGA
AGCCCAGATTGCACAGTGGCAGAGTGCCTACGTAAACAAGGAAGAGATGC
CCGTAGCCGGCAAGGTTCCTGGTCGCCCGGGTGTTAACCCGGGTGTTACT
GGTCCCACTTCTGGTGCAAATACCCCATCCGGTTCCAATACAGCGGCTAA
CACGCCAGCACCCACCGTGGGTAACCCGGAGCCTGCGCCGAAGACTGTGG
TTCGTGCCGGAGGTGGTCAGACCTGGTCCGATTCGACCCTACTCGAGTGG
GATCCCGCACATTTTCGCTTGTTTGTAGGCAATCTGGCTGGTGAGGTCAC
GGACGATTCGCTACTCAAGGCATTCTCCAAGTACACCTCCGTTCAAAAGG
CTCGAGTAATCCGTGACAAACGTACCCAGAAGAGTAAAGGCTACGGATTC
GTCAGTTTCAGCGACGGCGACGATTATTTCAAGGCTGCGAGAGAAATGCA
GGGCAAGTACATTGGCTCGCATCCGGTTCTGCTCCGACGAGCCACCACAG
AGGTCCGTCCCGTGTCCAATACGAAGAATGGAAAGAAGCATGGTGGTGGA
GGCGGTTCGGGTGGTGGTTCCGGCAGTGGTAAAGTCAAGCACGATGGAGT
CAAAAAGCACGGAAAGACCAAGGGAGGACTCAAGATTATTGGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_002748KJC3_002748Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002748-T1KJC3_002748-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002748-T1.cdsKJC3_002748-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002748-T1.utr3p1KJC3_002748-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002748-T1.exon2KJC3_002748-T1.exon2Aspergillus niger KJC3exon
KJC3_002748-T1.exon1KJC3_002748-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_002748-T1.utr5p2KJC3_002748-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_002748-T1.utr5p1KJC3_002748-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034215
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch2supercontigch2:3456682..3458396 -
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