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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3609393..3610109+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002792-T1 ID=KJC3_002792-T1|Name=KJC3_002792-T1|organism=Aspergillus niger KJC3|type=mRNA|length=717bp|location=Sequence derived from alignment at ch2:3609393..3610109+ (Aspergillus niger KJC3)
ATGGCCCAACAAGGGTCTGGGAAACCTTTTCGTCCCATTGCCCCTAGGAG
GATACCAGAGCCTCCAACCCCGGCCGCTGCGCCCGAGGAGGGGAAAATAA
AGCGAGCTTCCACGGCTTGCGGGGAATGTAAACGACGTCGAACGAAGGTG
AAACCCCCCCCCCCCCCCCCCCCCCAGCTTGGCTCTTCTAGTACACTTCA
GCGGTTGCCTTTCCTTTATAATGCATCACAATGATTCATCCAGCCAACCC
CCCCTCCCCTTTCCCCCCCTCCCCTTTCCCCCCCTCCTCCCCCACCCGTT
AAGTTCCTTTATCCTCCCCCTCTTTCTGTTCTGACCCGGGTGGTGGTATC
ACAGTGTAGTGCAGATACAACAGGGACGCCGTGCGCTGAATGTGCTCTCC
ACGACCGGGAGTGCGTGATCGATGAATTCGCCGACAAACGACGCAAGGTA
GCGGCCAAGCGTGCCCAGGAGGATCTAAAATATTACCGTGGCTTTGTGGA
ACAACTTCTTGAGGCGCTGCGATCTAGTGATTGTGCCACCATCGATGGTA
TTCTCGACGTCATCCGGTCGGGCGCAACTCATGATGAAATCCGGGCGGTT
CTTGCTCGCTCCGCGCCGAAGGCTGAGATTAATATCCCCGACGGAGTAGA
TTCCGTGGTGACAGACGGCAACAACAGCCCGCCGGCGAGCTCCAAGCCGG
ATGGCCTACCCGAATGA back to topCoding sequence (CDS) from alignment at ch2:3609393..3610109+ >KJC3_002792-T1 ID=KJC3_002792-T1|Name=KJC3_002792-T1|organism=Aspergillus niger KJC3|type=CDS|length=1020bp|location=Sequence derived from alignment at ch2:3609393..3610109+ (Aspergillus niger KJC3)
ATGGCCCAACAAGGGTCTGGGAAACCTTTTCGTCCCATTGCCCCTAGGAG
GATACCAGAGCCTCCAACCCCGGCCGCTGCGCCCGAGGAGGGGAAAATAA
AGCGAGCTTCCACGGCTTGCGGGGAATGTAAACGACGTCGAACGAAGTGT
AGTGCAGATACAACAGGGACGCCGTGCGCTGAATGTGCTCTCCACGACCG
GGAGTGCGTGATCGATGAATTCGCCGACAAACGACGCAAGGTAGCGGCCA
AGCGTGCCCAGGAGGATCTAAAATATTACCGTGGCTTTGTGGAACAACTT
CTTGAGGCGCTGCGATCTAGTGATTGTGCCACCATCGATGGTATTCTCGA
CGTCATCCGGTCGGGCGCAACTCATGATGAAATCCGGGCGGTTCTTGCTC
GCTCCGCGCCGAAGGCTGAGATTAATATCCCCGACGGAGTAGATTCCGTG
GTGACAGACGGCAACAACAGCCCGCCGGCGAGCTCCAAGCCGGATGGCCT
ACCCGAATGAATGGCCCAACAAGGGTCTGGGAAACCTTTTCGTCCCATTG
CCCCTAGGAGGATACCAGAGCCTCCAACCCCGGCCGCTGCGCCCGAGGAG
GGGAAAATAAAGCGAGCTTCCACGGCTTGCGGGGAATGTAAACGACGTCG
AACGAAGTGTAGTGCAGATACAACAGGGACGCCGTGCGCTGAATGTGCTC
TCCACGACCGGGAGTGCGTGATCGATGAATTCGCCGACAAACGACGCAAG
GTAGCGGCCAAGCGTGCCCAGGAGGATCTAAAATATTACCGTGGCTTTGT
GGAACAACTTCTTGAGGCGCTGCGATCTAGTGATTGTGCCACCATCGATG
GTATTCTCGACGTCATCCGGTCGGGCGCAACTCATGATGAAATCCGGGCG
GTTCTTGCTCGCTCCGCGCCGAAGGCTGAGATTAATATCCCCGACGGAGT
AGATTCCGTGGTGACAGACGGCAACAACAGCCCGCCGGCGAGCTCCAAGC
CGGATGGCCTACCCGAATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3609393..3610109 + |
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