|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch2:3841143..3842584- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002886-T1 ID=KJC3_002886-T1|Name=KJC3_002886-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1442bp|location=Sequence derived from alignment at ch2:3841143..3842584- (Aspergillus niger KJC3)
GTCCCCTCTTAAATCAAGACATCTTCGCACTCACATCCCACTACTTCTCC
TTCCAAAAACATCTTTTGTCATCCACCAAGATGGCTGAAAGCACTGGCTC
CTTGAGCTCGGACAGTGTGTTGGCGATCGCCGCAACAGCTCTTCGCGGAG
ATGGGGCCGCGCCGCCTAGTCTCAAGACGCCATACGAGGCGATCGCTCTA
GTTGGCCATGCGTCTATGACAGCAGTCGGCTTTCGCTTAGTCGGGCTTGG
GGAAGATCATACGCTAGGTATGTGCGATGCGACCATTGCAAGGTAATCAA
GTACGCCTTACTGATGATTCTCAACCTTGCAGAGAACCAATCCGAGAGCC
CCTCACTCCCCGCAGAATGGAACGCCAACACGGCCTTTGCCTTCCGTTAC
GCCCACTCACAGTCGTCGATGCAGTATCTGCTCAAGATTAGCCGACTTGG
AAATAACGCTGTCATTTTCGCCTTGGCTCTGGGCGATGACAGAACTACAT
CCTTCGATCTCCCCGTGAAAGACTACGTCTCCGAATCAGCCCTTCCCTTG
ACCACTACCGGCGATGATCTCCCAGCAGCACTGCGCGAAGCATTTATATC
TCCCTCTCGTGTCCAGGACCTGATCGGATTATTCAAGATCAACGTCATGC
AGAAGCTGGCGCCTGGATTGTACAAAGAAGGCTACGAAGATTCGTCCGAT
CAGCCACAGGAGACGTTGCGCGAGAGAACTCTGGAAAGACCTCCACGCCA
TGATCCCTTACGAGACGATCCGATGCCCCAACCCGCTCGCCCGTATCCAT
TTGACGACCCCCTAGCGGTGCCTCCCCGACGACCCATTCCCGCGGGGGAC
TTTCCTCCACCAGGATTCGAGGATGAGTTCGAGATCCAGAGACCACCCCG
AGGATACCCGGGAGGTATGGGGGGAAGAAATCCGTTGAGTATTGGAGACC
GCGATTTGTACCCTGCCGGATTAGGCCCAAATGATCCTTTGCGAGGAGGC
GTAGGCCCTGGGCTGGGAGGTGGCGGCGGCGGTGGTGGTGGTATGCACCC
CACGTTCGATGATCCTCTGTTTGGTGGACCTCGTGGACAAGGTTACGATC
CCCAAGCACCACCAGGATCGCGGTATGATCCGGTAGGACCCGGACAAGGG
GCACCGTTTGGACGAGGACAGGGGCCGTATGGGGGACGCGGGTTTGGCGG
AGGGTTCGGGGGATTTGGTGGTGACATCATTTAAGCGCGGCGGCTGAGGC
TGAGGGAGAGCAAAGTTTGAACTACACGGTACATAATTCGTTAGTGTGCA
CGACGTGATGACACAGAATGAGTGATGATATGATTTGTATGTATATGAAT
GTTAGGATTAGTGTTATTCTGTTTTGAATTAAGTCGATATGTTTACTATT
TCGTGTAATCAATACATTCAATGGATGCTCTGGTTTTTGCTG back to topCoding sequence (CDS) from alignment at ch2:3841143..3842584- >KJC3_002886-T1 ID=KJC3_002886-T1|Name=KJC3_002886-T1|organism=Aspergillus niger KJC3|type=CDS|length=2178bp|location=Sequence derived from alignment at ch2:3841143..3842584- (Aspergillus niger KJC3)
AGAACCAATCCGAGAGCCCCTCACTCCCCGCAGAATGGAACGCCAACACG
GCCTTTGCCTTCCGTTACGCCCACTCACAGTCGTCGATGCAGTATCTGCT
CAAGATTAGCCGACTTGGAAATAACGCTGTCATTTTCGCCTTGGCTCTGG
GCGATGACAGAACTACATCCTTCGATCTCCCCGTGAAAGACTACGTCTCC
GAATCAGCCCTTCCCTTGACCACTACCGGCGATGATCTCCCAGCAGCACT
GCGCGAAGCATTTATATCTCCCTCTCGTGTCCAGGACCTGATCGGATTAT
TCAAGATCAACGTCATGCAGAAGCTGGCGCCTGGATTGTACAAAGAAGGC
TACGAAGATTCGTCCGATCAGCCACAGGAGACGTTGCGCGAGAGAACTCT
GGAAAGACCTCCACGCCATGATCCCTTACGAGACGATCCGATGCCCCAAC
CCGCTCGCCCGTATCCATTTGACGACCCCCTAGCGGTGCCTCCCCGACGA
CCCATTCCCGCGGGGGACTTTCCTCCACCAGGATTCGAGGATGAGTTCGA
GATCCAGAGACCACCCCGAGGATACCCGGGAGGTATGGGGGGAAGAAATC
CGTTGAGTATTGGAGACCGCGATTTGTACCCTGCCGGATTAGGCCCAAAT
GATCCTTTGCGAGGAGGCGTAGGCCCTGGGCTGGGAGGTGGCGGCGGCGG
TGGTGGTGGTATGCACCCCACGTTCGATGATCCTCTGTTTGGTGGACCTC
GTGGACAAGGTTACGATCCCCAAGCACCACCAGGATCGCGGTATGATCCG
GTAGGACCCGGACAAGGGGCACCGTTTGGACGAGGACAGGGGCCGTATGG
GGGACGCGGGTTTGGCGGAGGGTTCGGGGGATTTGGTGGTGACATCATTT
AAATGGCTGAAAGCACTGGCTCCTTGAGCTCGGACAGTGTGTTGGCGATC
GCCGCAACAGCTCTTCGCGGAGATGGGGCCGCGCCGCCTAGTCTCAAGAC
GCCATACGAGGCGATCGCTCTAGTTGGCCATGCGTCTATGACAGCAGTCG
GCTTTCGCTTAGTCGGGCTTGGGGAAGATCATACGCTAGAGAACCAATCC
GAGAGCCCCTCACTCCCCGCAGAATGGAACGCCAACACGGCCTTTGCCTT
CCGTTACGCCCACTCACAGTCGTCGATGCAGTATCTGCTCAAGATTAGCC
GACTTGGAAATAACGCTGTCATTTTCGCCTTGGCTCTGGGCGATGACAGA
ACTACATCCTTCGATCTCCCCGTGAAAGACTACGTCTCCGAATCAGCCCT
TCCCTTGACCACTACCGGCGATGATCTCCCAGCAGCACTGCGCGAAGCAT
TTATATCTCCCTCTCGTGTCCAGGACCTGATCGGATTATTCAAGATCAAC
GTCATGCAGAAGCTGGCGCCTGGATTGTACAAAGAAGGCTACGAAGATTC
GTCCGATCAGCCACAGGAGACGTTGCGCGAGAGAACTCTGGAAAGACCTC
CACGCCATGATCCCTTACGAGACGATCCGATGCCCCAACCCGCTCGCCCG
TATCCATTTGACGACCCCCTAGCGGTGCCTCCCCGACGACCCATTCCCGC
GGGGGACTTTCCTCCACCAGGATTCGAGGATGAGTTCGAGATCCAGAGAC
CACCCCGAGGATACCCGGGAGGTATGGGGGGAAGAAATCCGTTGAGTATT
GGAGACCGCGATTTGTACCCTGCCGGATTAGGCCCAAATGATCCTTTGCG
AGGAGGCGTAGGCCCTGGGCTGGGAGGTGGCGGCGGCGGTGGTGGTGGTA
TGCACCCCACGTTCGATGATCCTCTGTTTGGTGGACCTCGTGGACAAGGT
TACGATCCCCAAGCACCACCAGGATCGCGGTATGATCCGGTAGGACCCGG
ACAAGGGGCACCGTTTGGACGAGGACAGGGGCCGTATGGGGGACGCGGGT
TTGGCGGAGGGTTCGGGGGATTTGGTGGTGACATCATTTAAATGGCTGAA
AGCACTGGCTCCTTGAGCTCGGACAGTGTGTTGGCGATCGCCGCAACAGC
TCTTCGCGGAGATGGGGCCGCGCCGCCTAGTCTCAAGACGCCATACGAGG
CGATCGCTCTAGTTGGCCATGCGTCTATGACAGCAGTCGGCTTTCGCTTA
GTCGGGCTTGGGGAAGATCATACGCTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002886-T1.utr3p1 | KJC3_002886-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002886-T1.utr5p1 | KJC3_002886-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013886 |
| DBxref | InterPro:IPR021625 |
| DBxref | PFAM:PF11566 |
| DBxref | PFAM:PF08577 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch2 | supercontig | ch2:3841143..3842584 - |
|
